Clone Sequence Records
BS14653.3prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14653.3prime
ATGGTCTAGAAAGCTTTTAATCGTAGTACAGGTAAAAGGTGGTGCAGACT
GCAAAGTACGAGGGTCTCTCCACGCTGTAGGTCACAAATCCGTCTTTTTC
AGCATCCCACAGGAAGTTGACCATGGAGTAGAGGCCCTGCATCAGGAACT
CGCCCACAGTGACCAGCACTATGTAGCGATATCTGTCGTAGTTGTCGAGT
TTGATGCGGTTCTTGATTTCCTCGCTCACTTGCGCGGCCATGTGGAGGGA
ATGCTTGGGATGGAACATGTACTCATCGTTGTAGTGTCGGTTCATCACCG
CCTTTATGATGTTCTCCACGCGTTCCTTGTTGAGCGGATTCTTGGACTCC
AGGCGGTAGGTGGGCATGAACCGCATGGTGGGCTTGGCTGCCGGAGCACC
CATCGGCAAGGAAACGCCCATATGGGACTTGGTCAGCGATCCGCGCTGGC
TGCTTGCCGGCCTCGGCTTAGTGCCCTCGGCCGACTTTTCTTTCTTCTCC
TTTTTGCCCTTGCCAGTTTCCGCCTCCTTGGCGGCGGTCTCTGGCACGAC
ATCCTTGCTGCGCCGCTCTTCCGGTGAGTCGCCCATGTCGACTGATAACT
BS14653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PA | 570 | CG14763-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..586 | 587..17 | 2855 | 100 | Minus |
CG14763-RB | 690 | CG14763-RB | 16..586 | 587..17 | 2855 | 100 | Minus |
CG14763-RA | 647 | CG14763-RA | 16..586 | 587..17 | 2855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 183..388 | 1015 | 99.5 | Plus |
2R | 25286936 | 2R | 7966839..7967007 | 17..185 | 845 | 100 | Plus |
2R | 25286936 | 2R | 7967886..7968009 | 464..587 | 620 | 100 | Plus |
2R | 25286936 | 2R | 7967319..7967400 | 383..464 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:39 has no hits.
BS14653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:54 Download gff for
BS14653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:31 Download gff for
BS14653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 9..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:07 Download gff for
BS14653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 9..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:07 Download gff for
BS14653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7966828..7967004 | 9..182 | 97 | <- | Plus |
2R | 7967059..7967258 | 183..382 | 100 | <- | Plus |
2R | 7967319..7967399 | 383..463 | 100 | <- | Plus |
2R | 7967886..7968017 | 464..596 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:31 Download gff for
BS14653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854333..3854509 | 9..182 | 97 | <- | Plus |
arm_2R | 3854564..3854763 | 183..382 | 100 | <- | Plus |
arm_2R | 3854824..3854904 | 383..463 | 100 | <- | Plus |
arm_2R | 3855391..3855522 | 464..596 | 97 | | Plus |
BS14653.5prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14653.5prime
GAAGTTATCAGTCGACATGGGCGACTCACCGGAAGAGCGGCGCAGCAAGG
ATGTCGTGCCAGAGACCGCCGCCAAGGAGGCGGAAACTGGCAAGGGCAAA
AAGGAGAAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAG
CAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGA
TGGGTGCTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGC
CTGGAGTCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAA
GGCGGTGATGAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGC
ATTCCCTCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATC
AAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGG
CGAGTTCCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATG
CTGAAAAAGACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTT
GCAGTCTGCACCACCTTTTACCTGTACTACGATTAAAAGCTTTCTAGACC
BS14653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PA | 570 | CG14763-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..586 | 16..586 | 2855 | 100 | Plus |
CG14763-RB | 690 | CG14763-RB | 16..586 | 16..586 | 2855 | 100 | Plus |
CG14763-RA | 647 | CG14763-RA | 16..586 | 16..586 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 420..215 | 1015 | 99.5 | Minus |
2R | 25286936 | 2R | 7966839..7967007 | 586..418 | 845 | 100 | Minus |
2R | 25286936 | 2R | 7967886..7968009 | 139..16 | 620 | 100 | Minus |
2R | 25286936 | 2R | 7967319..7967400 | 220..139 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:47 has no hits.
BS14653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:54 Download gff for
BS14653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:54 Download gff for
BS14653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 7..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:02 Download gff for
BS14653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 7..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:02 Download gff for
BS14653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7966828..7967004 | 421..594 | 97 | <- | Minus |
2R | 7967059..7967258 | 221..420 | 100 | <- | Minus |
2R | 7967319..7967399 | 140..220 | 100 | <- | Minus |
2R | 7967886..7968017 | 7..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:54 Download gff for
BS14653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854333..3854509 | 421..594 | 97 | <- | Minus |
arm_2R | 3854564..3854763 | 221..420 | 100 | <- | Minus |
arm_2R | 3854824..3854904 | 140..220 | 100 | <- | Minus |
arm_2R | 3855391..3855522 | 7..139 | 97 | | Minus |
BS14653.complete Sequence
602 bp assembled on 2006-11-01
GenBank Submission: FJ637744
> BS14653.complete
GAAGTTATCAGTCGACATGGGCGACTCACCGGAAGAGCGGCGCAGCAAGG
ATGTCGTGCCAGAGACCGCCGCCAAGGAGGCGGAAACTGGCAAGGGCAAA
AAGGAGAAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAG
CAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGA
TGGGTGCTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGC
CTGGAGTCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAA
GGCGGTGATGAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGC
ATTCCCTCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATC
AAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGG
CGAGTTCCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATG
CTGAAAAAGACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTT
GCAGTCTGCACCACCTTTTACCTGTACTACGATTAAAAGCTTTCTAGACC
AT
BS14653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 570 | CG14763-PC | 1..570 | 17..586 | 2850 | 100 | Plus |
CG14763-RB | 570 | CG14763-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
CG14763-RA | 570 | CG14763-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..586 | 16..586 | 2855 | 100 | Plus |
CG14763-RB | 690 | CG14763-RB | 16..586 | 16..586 | 2855 | 100 | Plus |
CG14763-RA | 647 | CG14763-RA | 16..586 | 16..586 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 420..215 | 1015 | 99.5 | Minus |
2R | 25286936 | 2R | 7966839..7967007 | 586..418 | 845 | 100 | Minus |
2R | 25286936 | 2R | 7967886..7968009 | 139..16 | 620 | 100 | Minus |
2R | 25286936 | 2R | 7967319..7967400 | 220..139 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:58 has no hits.
BS14653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:47 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:47 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 7..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:01 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 17..584 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:47 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..597 | 7..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:49 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 17..584 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:49 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7967886..7968008 | 17..139 | 100 | | Minus |
2R | 7966841..7967004 | 421..584 | 100 | <- | Minus |
2R | 7967059..7967258 | 221..420 | 100 | <- | Minus |
2R | 7967319..7967399 | 140..220 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:01 Download gff for
BS14653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854564..3854763 | 221..420 | 100 | <- | Minus |
arm_2R | 3854824..3854904 | 140..220 | 100 | <- | Minus |
arm_2R | 3855391..3855513 | 17..139 | 100 | | Minus |
arm_2R | 3854346..3854509 | 421..584 | 100 | <- | Minus |
BS14653.pep Sequence
Translation from 16 to 585
> BS14653.pep
MGDSPEERRSKDVVPETAAKEAETGKGKKEKKEKSAEGTKPRPASSQRGS
LTKSHMGVSLPMGAPAAKPTMRFMPTYRLESKNPLNKERVENIIKAVMNR
HYNDEYMFHPKHSLHMAAQVSEEIKNRIKLDNYDRYRYIVLVTVGEFLMQ
GLYSMVNFLWDAEKDGFVTYSVERPSYFAVCTTFYLYYD*
BS14653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PC | 189 | CG14763-PC | 1..189 | 1..189 | 993 | 100 | Plus |
CG14763-PB | 189 | CG14763-PB | 1..189 | 1..189 | 993 | 100 | Plus |
CG14763-PA | 189 | CG14763-PA | 1..189 | 1..189 | 993 | 100 | Plus |