Clone Sequence Records
BS14656.5prime Sequence
624 bp (624 high quality bases) assembled on 2006-10-13
> BS14656.5prime
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGTAAAAGCTTTCTAGACC
BS14656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PA | 594 | CG10326-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..759 | 16..611 | 2980 | 100 | Plus |
CG10326-RA | 1294 | CG10326-RA | 280..875 | 16..611 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 37..406 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 16644547..16644752 | 406..611 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:15 has no hits.
BS14656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:56 Download gff for
BS14656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:13 Download gff for
BS14656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 10..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:50 Download gff for
BS14656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 10..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:50 Download gff for
BS14656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16644018..16644383 | 41..406 | 100 | -> | Plus |
3R | 16644548..16644752 | 407..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:13 Download gff for
BS14656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12469740..12470105 | 41..406 | 100 | -> | Plus |
arm_3R | 12470270..12470474 | 407..611 | 100 | | Plus |
BS14656.3prime Sequence
624 bp (624 high quality bases) assembled on 2006-10-13
> BS14656.3prime
ATGGTCTAGAAAGCTTTTACTGCAGCTTCCTTTTGCCGCACTGGATCTTC
TCGTTAATAATCTTCGAGGCCCTTTGGGTGATGGCCTTAAAAATGTCCTT
GTTCTGTAGTCCTGGCCACATGAGGATGAGTAGGGTGGCCAAGTACATAA
GCAGTAGATTGTTAATGATGGCTCCAATCCAGGCCATAGCCAAAAGACCC
AAACTCATGACGATTACAAACACTGTGGACTTCCGCTCGTTGAAGAGGTA
CTCGTACCAGACCACCAGGCTGCCCTTGACGGCGCACACCTGGCCGCACA
CGTCCTCGAACTTGGCCTCCTGGTCGCCATCCCAGTTGACTCCGCCAAAG
ATCAGGCGCGACACCATGGGGAATGCGTAGTTCAGCAAAATGCTAATGAC
ACCGAGCAGCGACAGCAGGGTAATCAGCGACAAGTCCAGGTACCACAGCA
CCAGGTACAGGCAGCTGATGACGCCAAACACCACTCCGGCGTAGTACTGC
TTCTCCCAGGTTAGCACGCCGTACGCTCCCACGATGGCTGTCCGGAAAGG
CTCCAAGTCGTGCTTTAATTTGTTAAGTGCTCGTTTCTGGTCAACCTGCG
ATGCTGCCATGTCGACTGATAACT
BS14656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PA | 594 | CG10326-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..759 | 611..16 | 2980 | 100 | Minus |
CG10326-RA | 1294 | CG10326-RA | 280..875 | 611..16 | 2980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 590..221 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 16644547..16644752 | 221..16 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:22 has no hits.
BS14656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:56 Download gff for
BS14656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:08 Download gff for
BS14656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 16..617 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:42 Download gff for
BS14656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 16..617 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:42 Download gff for
BS14656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16644018..16644383 | 221..586 | 100 | -> | Minus |
3R | 16644548..16644752 | 16..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:08 Download gff for
BS14656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12470270..12470474 | 16..220 | 100 | | Minus |
arm_3R | 12469740..12470105 | 221..586 | 100 | -> | Minus |
BS14656.complete Sequence
626 bp assembled on 2006-11-01
GenBank Submission: FJ637745
> BS14656.complete
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGTAAAAGCTTTCTAGACCAT
BS14656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 594 | CG10326-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG10326-RA | 594 | CG10326-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..759 | 16..611 | 2980 | 100 | Plus |
CG10326-RA | 1294 | CG10326-RA | 280..875 | 16..611 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 37..406 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 16644547..16644752 | 406..611 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:34:21 has no hits.
BS14656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:58 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:57 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 10..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:21 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 281..872 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:58 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..875 | 10..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:27 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 281..872 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:27 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16644548..16644749 | 407..608 | 100 | | Plus |
3R | 16643885..16643908 | 17..40 | 100 | -> | Plus |
3R | 16644018..16644383 | 41..406 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:21 Download gff for
BS14656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12469607..12469630 | 17..40 | 100 | -> | Plus |
arm_3R | 12469740..12470105 | 41..406 | 100 | -> | Plus |
arm_3R | 12470270..12470471 | 407..608 | 100 | | Plus |
BS14656.pep Sequence
Translation from 16 to 609
> BS14656.pep
MAASQVDQKRALNKLKHDLEPFRTAIVGAYGVLTWEKQYYAGVVFGVISC
LYLVLWYLDLSLITLLSLLGVISILLNYAFPMVSRLIFGGVNWDGDQEAK
FEDVCGQVCAVKGSLVVWYEYLFNERKSTVFVIVMSLGLLAMAWIGAIIN
NLLLMYLATLLILMWPGLQNKDIFKAITQRASKIINEKIQCGKRKLQ*
BS14656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PB | 197 | CG10326-PB | 1..197 | 1..197 | 1011 | 100 | Plus |
CG10326-PA | 197 | CG10326-PB | 1..197 | 1..197 | 1011 | 100 | Plus |