Clone Sequence Records
BS14660.3prime Sequence
744 bp (704 high quality bases) assembled on 2006-10-13
> BS14660.3prime
ATGGTCTAGAAAGCTTTCACAGTCCCTTGTTGAACCAGACAGTTTCCAAT
TCCGGACGCTTCTTCCTAATGCTGTCGCGGACCTCCGACTCCAGGCTATC
CACTTTGATGTCCGCTCGCTGCTTGAAGAAGGCGCAGCCAAGGGGCGTGG
CGAAAATCAGCACGAAGCCGCAGAAGAGCGTTTGGATGGGAGCGTTGGAT
CGCGGGTATTTAGCCAGGAATCCCCTCTTTTCGAGGACATTCATCAACAC
CGGTGTCAGTGTCATTCCCGGTATGGCCATGGCGATTCGACTTAGGATTA
CGGTTGAGATCCCAACAACGGCCGCCTTCTTTGAGATGCCCATTTCGTTG
CTGTGTTCATCGAAAAGCGTCACTCCGTTGCGCAGCTCTTGCATTCGCAT
GCAGGGGATGTTGATGCAGTTGGCAGCTCCAACTGCCACTAGGGGGACAA
GGCGACCCAAGAGCGGATTCATGTTCTTCACTGCGTGGTTCAGGGAAAGG
GCCGTGACCAGGGCTCCGCTAGTGGCCAAACAGTACGAGGTAACTAGTTG
CTGCTGGCTGATGGGCGAGGTTCCCGAACGGTTCGTGTAGTTAACAATGG
CGTTGAATGTCTGATTGAACCACTGCCAGAAGACGACGGCGGGAGTGCTT
TTGTAGAAGGCCATCATGCCGCCGGTGATGATTGTGTTCATGGGCATCTG
CGCAGCCATGCGCCCGATGACTATCTGCTTCTCCCCGGTCTCTG
BS14660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PC | 966 | CG11739-RC | 239..966 | 744..17 | 3640 | 100 | Minus |
CG11739-PA | 966 | CG11739-RA | 239..966 | 744..17 | 3640 | 100 | Minus |
CG11739-PD | 966 | CG11739-RD | 239..966 | 744..17 | 3640 | 100 | Minus |
CG11739-PB | 966 | CG11739-RB | 239..966 | 744..17 | 3640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 388..1115 | 744..17 | 3640 | 100 | Minus |
CG11739-RD | 1320 | CG11739-RD | 330..1057 | 744..17 | 3640 | 100 | Minus |
CG11739-RA | 1645 | CG11739-RA | 655..1382 | 744..17 | 3640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4380703..4380947 | 261..17 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 4380109..4380270 | 551..390 | 810 | 100 | Minus |
3R | 32079331 | 3R | 4380504..4380631 | 389..262 | 640 | 100 | Minus |
3R | 32079331 | 3R | 4379927..4380046 | 670..551 | 600 | 100 | Minus |
3R | 32079331 | 3R | 4379750..4379825 | 744..669 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:48 has no hits.
BS14660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:59 Download gff for
BS14660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PB | 239..966 | 17..744 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:36 Download gff for
BS14660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 655..1385 | 13..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:53 Download gff for
BS14660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 655..1385 | 13..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:53 Download gff for
BS14660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4379750..4379824 | 670..744 | 100 | -> | Minus |
3R | 4379928..4380045 | 552..669 | 100 | -> | Minus |
3R | 4380109..4380270 | 390..551 | 100 | -> | Minus |
3R | 4380504..4380631 | 262..389 | 100 | -> | Minus |
3R | 4380703..4380948 | 13..261 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:36 Download gff for
BS14660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205472..205546 | 670..744 | 100 | -> | Minus |
arm_3R | 205650..205767 | 552..669 | 100 | -> | Minus |
arm_3R | 205831..205992 | 390..551 | 100 | -> | Minus |
arm_3R | 206226..206353 | 262..389 | 100 | -> | Minus |
arm_3R | 206425..206670 | 13..261 | 98 | -> | Minus |
BS14660.5prime Sequence
788 bp (764 high quality bases) assembled on 2006-10-13
> BS14660.5prime
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTA
BS14660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PC | 966 | CG11739-RC | 1..772 | 17..788 | 3860 | 100 | Plus |
CG11739-PA | 966 | CG11739-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
CG11739-PD | 966 | CG11739-RD | 1..772 | 17..788 | 3860 | 100 | Plus |
CG11739-PB | 966 | CG11739-RB | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 149..921 | 16..788 | 3865 | 100 | Plus |
CG11739-RD | 1320 | CG11739-RD | 91..863 | 16..788 | 3865 | 100 | Plus |
CG11739-RA | 1645 | CG11739-RA | 416..1188 | 16..788 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4379455..4379623 | 16..184 | 830 | 99.4 | Plus |
3R | 32079331 | 3R | 4380109..4380270 | 448..609 | 810 | 100 | Plus |
3R | 32079331 | 3R | 4379674..4379825 | 179..330 | 760 | 100 | Plus |
3R | 32079331 | 3R | 4380504..4380631 | 610..737 | 640 | 100 | Plus |
3R | 32079331 | 3R | 4379927..4380046 | 329..448 | 600 | 100 | Plus |
3R | 32079331 | 3R | 4380703..4380753 | 738..788 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:32 has no hits.
BS14660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:59 Download gff for
BS14660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PB | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:58 Download gff for
BS14660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 416..1187 | 16..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:50 Download gff for
BS14660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 416..1187 | 16..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:50 Download gff for
BS14660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4380109..4380270 | 448..609 | 100 | -> | Plus |
3R | 4380504..4380631 | 610..737 | 100 | -> | Plus |
3R | 4380703..4380752 | 738..787 | 100 | | Plus |
3R | 4379444..4379618 | 5..179 | 97 | -> | Plus |
3R | 4379675..4379824 | 180..329 | 100 | -> | Plus |
3R | 4379928..4380045 | 330..447 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:58 Download gff for
BS14660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205166..205340 | 5..179 | 97 | -> | Plus |
arm_3R | 205397..205546 | 180..329 | 100 | -> | Plus |
arm_3R | 205650..205767 | 330..447 | 100 | -> | Plus |
arm_3R | 205831..205992 | 448..609 | 100 | -> | Plus |
arm_3R | 206226..206353 | 610..737 | 100 | -> | Plus |
arm_3R | 206425..206474 | 738..787 | 100 | | Plus |
BS14660.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ637747
> BS14660.complete
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCTTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGAGTCGGAGGTCCGCGACAGCATTAGGAAGAAGCGTCCGGAAT
TGGAAACTGTCTGGTTCAACAAGGGACTGTGAAAGCTTTCTAGACCAT
BS14660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 966 | CG11739-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
CG11739-RD | 966 | CG11739-PD | 1..966 | 17..982 | 4830 | 100 | Plus |
CG11739-RA | 966 | CG11739-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 149..1115 | 16..982 | 4835 | 100 | Plus |
CG11739-RD | 1320 | CG11739-RD | 91..1057 | 16..982 | 4835 | 100 | Plus |
CG11739-RA | 1645 | CG11739-RA | 416..1382 | 16..982 | 4835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4380703..4380947 | 738..982 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 4379455..4379623 | 16..184 | 830 | 99.4 | Plus |
3R | 32079331 | 3R | 4380109..4380270 | 448..609 | 810 | 100 | Plus |
3R | 32079331 | 3R | 4379674..4379825 | 179..330 | 760 | 100 | Plus |
3R | 32079331 | 3R | 4380504..4380631 | 610..737 | 640 | 100 | Plus |
3R | 32079331 | 3R | 4379927..4380046 | 329..448 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:13:06 has no hits.
BS14660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:47 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:23 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 95..1059 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:16 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 417..1381 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:47 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 94..1063 | 16..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:25 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 417..1381 | 17..981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:25 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4379928..4380045 | 330..447 | 100 | -> | Plus |
3R | 4379456..4379618 | 17..179 | 100 | -> | Plus |
3R | 4379675..4379824 | 180..329 | 100 | -> | Plus |
3R | 4380109..4380270 | 448..609 | 100 | -> | Plus |
3R | 4380504..4380631 | 610..737 | 100 | -> | Plus |
3R | 4380703..4380946 | 738..981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:16 Download gff for
BS14660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205650..205767 | 330..447 | 100 | -> | Plus |
arm_3R | 205831..205992 | 448..609 | 100 | -> | Plus |
arm_3R | 206226..206353 | 610..737 | 100 | -> | Plus |
arm_3R | 206425..206668 | 738..981 | 100 | | Plus |
arm_3R | 205178..205340 | 17..179 | 100 | -> | Plus |
arm_3R | 205397..205546 | 180..329 | 100 | -> | Plus |
BS14660.pep Sequence
Translation from 16 to 981
> BS14660.pep
MSPLPRVNIDEPKYDQNSYLGRAKHFFLLTNPLNVLASASKLEEARQIVI
KYRAGKDVPECKTIDDVWRAKYLYDSAFHPETGEKQIVIGRMAAQMPMNT
IITGGMMAFYKSTPAVVFWQWFNQTFNAIVNYTNRSGTSPISQQQLVTSY
CLATSGALVTALSLNHAVKNMNPLLGRLVPLVAVGAANCINIPCMRMQEL
RNGVTLFDEHSNEMGISKKAAVVGISTVILSRIAMAIPGMTLTPVLMNVL
EKRGFLAKYPRSNAPIQTLFCGFVLIFATPLGCAFFKQRADIKVDSLESE
VRDSIRKKRPELETVWFNKGL*
BS14660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PB | 321 | CG11739-PB | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PD | 321 | CG11739-PD | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PA | 321 | CG11739-PA | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PC | 321 | CG11739-PC | 1..321 | 1..321 | 1657 | 100 | Plus |
CG6812-PA | 327 | CG6812-PA | 8..327 | 7..321 | 641 | 43 | Plus |