Clone BS14660 Report

Search the DGRC for BS14660

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG11739-RA
Protein status:BS14660.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14660.3prime Sequence

744 bp (704 high quality bases) assembled on 2006-10-13

> BS14660.3prime
ATGGTCTAGAAAGCTTTCACAGTCCCTTGTTGAACCAGACAGTTTCCAAT
TCCGGACGCTTCTTCCTAATGCTGTCGCGGACCTCCGACTCCAGGCTATC
CACTTTGATGTCCGCTCGCTGCTTGAAGAAGGCGCAGCCAAGGGGCGTGG
CGAAAATCAGCACGAAGCCGCAGAAGAGCGTTTGGATGGGAGCGTTGGAT
CGCGGGTATTTAGCCAGGAATCCCCTCTTTTCGAGGACATTCATCAACAC
CGGTGTCAGTGTCATTCCCGGTATGGCCATGGCGATTCGACTTAGGATTA
CGGTTGAGATCCCAACAACGGCCGCCTTCTTTGAGATGCCCATTTCGTTG
CTGTGTTCATCGAAAAGCGTCACTCCGTTGCGCAGCTCTTGCATTCGCAT
GCAGGGGATGTTGATGCAGTTGGCAGCTCCAACTGCCACTAGGGGGACAA
GGCGACCCAAGAGCGGATTCATGTTCTTCACTGCGTGGTTCAGGGAAAGG
GCCGTGACCAGGGCTCCGCTAGTGGCCAAACAGTACGAGGTAACTAGTTG
CTGCTGGCTGATGGGCGAGGTTCCCGAACGGTTCGTGTAGTTAACAATGG
CGTTGAATGTCTGATTGAACCACTGCCAGAAGACGACGGCGGGAGTGCTT
TTGTAGAAGGCCATCATGCCGCCGGTGATGATTGTGTTCATGGGCATCTG
CGCAGCCATGCGCCCGATGACTATCTGCTTCTCCCCGGTCTCTG

BS14660.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PC 966 CG11739-RC 239..966 744..17 3640 100 Minus
CG11739-PA 966 CG11739-RA 239..966 744..17 3640 100 Minus
CG11739-PD 966 CG11739-RD 239..966 744..17 3640 100 Minus
CG11739-PB 966 CG11739-RB 239..966 744..17 3640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 388..1115 744..17 3640 100 Minus
CG11739-RD 1320 CG11739-RD 330..1057 744..17 3640 100 Minus
CG11739-RA 1645 CG11739-RA 655..1382 744..17 3640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4380703..4380947 261..17 1225 100 Minus
3R 32079331 3R 4380109..4380270 551..390 810 100 Minus
3R 32079331 3R 4380504..4380631 389..262 640 100 Minus
3R 32079331 3R 4379927..4380046 670..551 600 100 Minus
3R 32079331 3R 4379750..4379825 744..669 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:50:48 has no hits.

BS14660.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:59 Download gff for BS14660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PB 239..966 17..744 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:36 Download gff for BS14660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 655..1385 13..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:53 Download gff for BS14660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 655..1385 13..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:53 Download gff for BS14660.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4379750..4379824 670..744 100 -> Minus
3R 4379928..4380045 552..669 100 -> Minus
3R 4380109..4380270 390..551 100 -> Minus
3R 4380504..4380631 262..389 100 -> Minus
3R 4380703..4380948 13..261 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:36 Download gff for BS14660.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205472..205546 670..744 100 -> Minus
arm_3R 205650..205767 552..669 100 -> Minus
arm_3R 205831..205992 390..551 100 -> Minus
arm_3R 206226..206353 262..389 100 -> Minus
arm_3R 206425..206670 13..261 98 -> Minus

BS14660.5prime Sequence

788 bp (764 high quality bases) assembled on 2006-10-13

> BS14660.5prime
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTA

BS14660.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PC 966 CG11739-RC 1..772 17..788 3860 100 Plus
CG11739-PA 966 CG11739-RA 1..772 17..788 3860 100 Plus
CG11739-PD 966 CG11739-RD 1..772 17..788 3860 100 Plus
CG11739-PB 966 CG11739-RB 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 149..921 16..788 3865 100 Plus
CG11739-RD 1320 CG11739-RD 91..863 16..788 3865 100 Plus
CG11739-RA 1645 CG11739-RA 416..1188 16..788 3865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4379455..4379623 16..184 830 99.4 Plus
3R 32079331 3R 4380109..4380270 448..609 810 100 Plus
3R 32079331 3R 4379674..4379825 179..330 760 100 Plus
3R 32079331 3R 4380504..4380631 610..737 640 100 Plus
3R 32079331 3R 4379927..4380046 329..448 600 100 Plus
3R 32079331 3R 4380703..4380753 738..788 255 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:32 has no hits.

BS14660.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:59 Download gff for BS14660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PB 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:58 Download gff for BS14660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 416..1187 16..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:50 Download gff for BS14660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 416..1187 16..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:50 Download gff for BS14660.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4380109..4380270 448..609 100 -> Plus
3R 4380504..4380631 610..737 100 -> Plus
3R 4380703..4380752 738..787 100   Plus
3R 4379444..4379618 5..179 97 -> Plus
3R 4379675..4379824 180..329 100 -> Plus
3R 4379928..4380045 330..447 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:58 Download gff for BS14660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205166..205340 5..179 97 -> Plus
arm_3R 205397..205546 180..329 100 -> Plus
arm_3R 205650..205767 330..447 100 -> Plus
arm_3R 205831..205992 448..609 100 -> Plus
arm_3R 206226..206353 610..737 100 -> Plus
arm_3R 206425..206474 738..787 100   Plus

BS14660.complete Sequence

998 bp assembled on 2006-11-01

GenBank Submission: FJ637747

> BS14660.complete
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCTTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGAGTCGGAGGTCCGCGACAGCATTAGGAAGAAGCGTCCGGAAT
TGGAAACTGTCTGGTTCAACAAGGGACTGTGAAAGCTTTCTAGACCAT

BS14660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 966 CG11739-PB 1..966 17..982 4830 100 Plus
CG11739-RD 966 CG11739-PD 1..966 17..982 4830 100 Plus
CG11739-RA 966 CG11739-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 149..1115 16..982 4835 100 Plus
CG11739-RD 1320 CG11739-RD 91..1057 16..982 4835 100 Plus
CG11739-RA 1645 CG11739-RA 416..1382 16..982 4835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4380703..4380947 738..982 1225 100 Plus
3R 32079331 3R 4379455..4379623 16..184 830 99.4 Plus
3R 32079331 3R 4380109..4380270 448..609 810 100 Plus
3R 32079331 3R 4379674..4379825 179..330 760 100 Plus
3R 32079331 3R 4380504..4380631 610..737 640 100 Plus
3R 32079331 3R 4379927..4380046 329..448 600 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:13:06 has no hits.

BS14660.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:47 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:23 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 95..1059 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:16 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 417..1381 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:47 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 94..1063 16..986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:25 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 417..1381 17..981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:25 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4379928..4380045 330..447 100 -> Plus
3R 4379456..4379618 17..179 100 -> Plus
3R 4379675..4379824 180..329 100 -> Plus
3R 4380109..4380270 448..609 100 -> Plus
3R 4380504..4380631 610..737 100 -> Plus
3R 4380703..4380946 738..981 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:16 Download gff for BS14660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205650..205767 330..447 100 -> Plus
arm_3R 205831..205992 448..609 100 -> Plus
arm_3R 206226..206353 610..737 100 -> Plus
arm_3R 206425..206668 738..981 100   Plus
arm_3R 205178..205340 17..179 100 -> Plus
arm_3R 205397..205546 180..329 100 -> Plus

BS14660.pep Sequence

Translation from 16 to 981

> BS14660.pep
MSPLPRVNIDEPKYDQNSYLGRAKHFFLLTNPLNVLASASKLEEARQIVI
KYRAGKDVPECKTIDDVWRAKYLYDSAFHPETGEKQIVIGRMAAQMPMNT
IITGGMMAFYKSTPAVVFWQWFNQTFNAIVNYTNRSGTSPISQQQLVTSY
CLATSGALVTALSLNHAVKNMNPLLGRLVPLVAVGAANCINIPCMRMQEL
RNGVTLFDEHSNEMGISKKAAVVGISTVILSRIAMAIPGMTLTPVLMNVL
EKRGFLAKYPRSNAPIQTLFCGFVLIFATPLGCAFFKQRADIKVDSLESE
VRDSIRKKRPELETVWFNKGL*

BS14660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PB 321 CG11739-PB 1..321 1..321 1657 100 Plus
CG11739-PD 321 CG11739-PD 1..321 1..321 1657 100 Plus
CG11739-PA 321 CG11739-PA 1..321 1..321 1657 100 Plus
CG11739-PC 321 CG11739-PC 1..321 1..321 1657 100 Plus
CG6812-PA 327 CG6812-PA 8..327 7..321 641 43 Plus