Clone BS14661 Report

Search the DGRC for BS14661

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptelfless-RA
Protein status:BS14661.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14661.3prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14661.3prime
ATGGTCTAGAAAGCTTTTACAAGAAAATACGATGGAATTCGGGCTCATCC
ACTCCGCACAATGGGCATACCCTGCCAGTGTCGACAGCTCTCTTAATGCA
CGCTTTGCAGAAAACGTGGCCACAATTGGTGGACACTGGTAGCTTCTCGC
GGACATCTTCCAGGCACACAGGGCAGTTGTAGGGCAAGACAGATTTCTTG
GACTCCTCGTCATCTGATTTGATCCGTTTGTTGGGAGGAGAATCCTCGTT
TGAATCTGAGGATTCTGTATGTCCCATTGGTGTTGATGATTCGGTGGAGC
TCATACTGCTATCGAAGCTAATGCTGGTCGATGAGCTTTCACTATCACTG
GAACTAGACGACTCTGAGTCGCTGGAATACTCCAACAGGAATGGGGTTCT
GTCGATAGATCTGCTGCTGCTTGAGGAGTCCGAGTCTCCGTAATACTCAT
TTGGATTCCGCTCAGAGGAACCGCTGAGTAAGCGGGATCTTAATCCGGAG
GGCGCGAGTACGGGAGTGGGCCCGGTGTTATGGATTCGCTGTGATACTCC
AGAATTATTCGAGGTCCTGAAGTTTTCCATGTCGACTGATAACT

BS14661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15150-PA 564 elfless-RA 1..564 580..17 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
elfless-RC 1376 CG15150-RC 226..789 580..17 2820 100 Minus
elfless-RB 1643 CG15150-RB 226..789 580..17 2820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18010497..18010866 17..386 1850 100 Plus
2L 23513712 2L 18011077..18011194 463..580 590 100 Plus
2L 23513712 2L 18010934..18011011 386..463 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:16:42 has no hits.

BS14661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:00 Download gff for BS14661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15150-PA 1..564 17..580 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:48 Download gff for BS14661.3prime
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 222..789 17..585 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:47 Download gff for BS14661.3prime
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 222..789 17..585 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:47 Download gff for BS14661.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18010497..18010865 17..385 100 <- Plus
2L 18010934..18011011 386..463 100 <- Plus
2L 18011078..18011198 464..585 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:48 Download gff for BS14661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18010497..18010865 17..385 100 <- Plus
arm_2L 18010934..18011011 386..463 100 <- Plus
arm_2L 18011078..18011198 464..585 98   Plus

BS14661.5prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14661.5prime
GAAGTTATCAGTCGACATGGAAAACTTCAGGACCTCGAATAATTCTGGAG
TATCACAGCGAATCCATAACACCGGGCCCACTCCCGTACTCGCGCCCTCC
GGATTAAGATCCCGCTTACTCAGCGGTTCCTCTGAGCGGAATCCAAATGA
GTATTACGGAGACTCGGACTCCTCAAGCAGCAGCAGATCTATCGACAGAA
CCCCATTCCTGTTGGAGTATTCCAGCGACTCAGAGTCGTCTAGTTCCAGT
GATAGTGAAAGCTCATCGACCAGCATTAGCTTCGATAGCAGTATGAGCTC
CACCGAATCATCAACACCAATGGGACATACAGAATCCTCAGATTCAAACG
AGGATTCTCCTCCCAACAAACGGATCAAATCAGATGACGAGGAGTCCAAG
AAATCTGTCTTGCCCTACAACTGCCCTGTGTGCCTGGAAGATGTCCGCGA
GAAGCTACCAGTGTCCACCAATTGTGGCCACGTTTTCTGCAAAGCGTGCA
TTAAGAGAGCTGTCGACACTGGCAGGGTATGCCCATTGTGCGGAGTGGAT
GAGCCCGAATTCCATCGTATTTTCTTGTAAAAGCTTTCTAGACC

BS14661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15150-PA 564 elfless-RA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
elfless-RC 1376 CG15150-RC 226..789 17..580 2820 100 Plus
elfless-RB 1643 CG15150-RB 226..789 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18010497..18010866 580..211 1850 100 Minus
2L 23513712 2L 18011077..18011194 134..17 590 100 Minus
2L 23513712 2L 18010934..18011011 211..134 390 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:30:59 has no hits.

BS14661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:00 Download gff for BS14661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15150-PA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:26 Download gff for BS14661.5prime
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 222..789 12..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:01 Download gff for BS14661.5prime
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 222..789 12..580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:01 Download gff for BS14661.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18011078..18011198 12..133 98   Minus
2L 18010497..18010865 212..580 100 <- Minus
2L 18010934..18011011 134..211 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:26 Download gff for BS14661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18010497..18010865 212..580 100 <- Minus
arm_2L 18010934..18011011 134..211 100 <- Minus
arm_2L 18011078..18011198 12..133 98   Minus

BS14661.complete Sequence

596 bp assembled on 2006-11-01

GenBank Submission: FJ637748

> BS14661.complete
GAAGTTATCAGTCGACATGGAAAACTTCAGGACCTCGAATAATTCTGGAG
TATCACAGCGAATCCATAACACCGGGCCCACTCCCGTACTCGCGCCCTCC
GGATTAAGATCCCGCTTACTCAGCGGTTCCTCTGAGCGGAATCCAAATGA
GTATTACGGAGACTCGGACTCCTCAAGCAGCAGCAGATCTATCGACAGAA
CCCCATTCCTGTTGGAGTATTCCAGCGACTCAGAGTCGTCTAGTTCCAGT
GATAGTGAAAGCTCATCGACCAGCATTAGCTTCGATAGCAGTATGAGCTC
CACCGAATCATCAACACCAATGGGACATACAGAATCCTCAGATTCAAACG
AGGATTCTCCTCCCAACAAACGGATCAAATCAGATGACGAGGAGTCCAAG
AAATCTGTCTTGCCCTACAACTGCCCTGTGTGCCTGGAAGATGTCCGCGA
GAAGCTACCAGTGTCCACCAATTGTGGCCACGTTTTCTGCAAAGCGTGCA
TTAAGAGAGCTGTCGACACTGGCAGGGTATGCCCATTGTGCGGAGTGGAT
GAGCCCGAATTCCATCGTATTTTCTTGTAAAAGCTTTCTAGACCAT

BS14661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
elfless-RC 690 CG15150-PC 127..690 17..580 2820 100 Plus
elfless-RB 690 CG15150-PB 127..690 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
elfless-RC 1376 CG15150-RC 226..789 17..580 2820 100 Plus
elfless-RB 1643 CG15150-RB 226..789 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18010497..18010866 580..211 1850 100 Minus
2L 23513712 2L 18011077..18011194 134..17 590 100 Minus
2L 23513712 2L 18010934..18011011 211..134 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:23 has no hits.

BS14661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:48 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
elfless-RA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:48 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
elfless-RA 12..579 12..580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:42 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 226..787 17..578 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:49 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
elfless-RA 12..579 12..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:41 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
elfless-RB 226..787 17..578 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:41 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18010499..18010865 212..578 100 <- Minus
2L 18010934..18011011 134..211 100 <- Minus
2L 18011078..18011194 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:42 Download gff for BS14661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18010499..18010865 212..578 100 <- Minus
arm_2L 18010934..18011011 134..211 100 <- Minus
arm_2L 18011078..18011194 17..133 100   Minus

BS14661.pep Sequence

Translation from 16 to 579

> BS14661.pep
MENFRTSNNSGVSQRIHNTGPTPVLAPSGLRSRLLSGSSERNPNEYYGDS
DSSSSSRSIDRTPFLLEYSSDSESSSSSDSESSSTSISFDSSMSSTESST
PMGHTESSDSNEDSPPNKRIKSDDEESKKSVLPYNCPVCLEDVREKLPVS
TNCGHVFCKACIKRAVDTGRVCPLCGVDEPEFHRIFL*

BS14661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
elfless-PC 229 CG15150-PC 43..229 1..187 974 100 Plus
elfless-PB 229 CG15150-PB 43..229 1..187 974 100 Plus
dgrn-PD 205 CG10981-PD 127..205 109..187 182 44.4 Plus
dgrn-PB 312 CG10981-PB 234..312 109..187 182 44.4 Plus
dgrn-PA 319 CG10981-PA 241..319 109..187 182 44.4 Plus