Clone Sequence Records
BS14662.complete Sequence
1694 bp assembled on 2009-12-07
GenBank Submission: KX803974
> BS14662.complete
GAAGTTATCAGTCGACATGGTGTCAAGCACGGAATGTCCTGTTTGCGGAG
TTGCTGCCTCACAAGCGTGCACTAGGTGCAAAATGGTGCGATACTGCGAC
CGAGAGCACCAGAAGCAGCACTGGCCGCAGCACAAGCGCAGATGTAGGCC
ATTCAGCGAGGAGCAGGATGCCGAGCTGGGCAGATATTTGAAGGTTACCC
AGAACATAGCAGCCGGGCAAATAGTCTTCATTGAGGAGCCCCTAGTGGTG
GGTCCCAAGTGGTATCTCTCCGACGCAGACAAGGAGGCCTCTAACGTTCC
GTGTGTAGGCTGTTACACTCCGTGCCGTCTGGGGAAGCACCAGTGTCGAA
GATGCCGTTGGCCAGTCTGCAGCGCAGGCTGCAAGCACGAGTCAATGGAA
TGCAGCGTGCTTAGCCTCGGATCGGGTTCACCAACTCGGGCAGATGCCCG
CTCATTGAACGACTACTTCAGGGGCGATGCTCTTTTGGTGCTCAAATGCC
TTCTGTTGCAGCGACAGAGTCCCACGAAATGGTCCGCGTTGTTAGAGATG
CAGTCTCATGAGGAGGAGCGTAAGGGCACCGATCTGTACGAGGAAGCAGA
GAAGCGAGTAGTGACCTACCTTCAAAAGCGGTTTTTATGTAGACTTAAGC
AAACTAATCCAAACCTTCTGACCGATTGTGGACCAGAGATGCTGCATCGG
CTTTGCGGCATCATCGAAACAAACTTTATGGTTATCGAACTCCCGAGTGG
CGTGGAACTCAGCGGGTTGTTCCGGCAGGCCTGCATGATGGAGCATGCTT
GTCAGCCCAACTGCGACTTTCAGTTTGATAACAAGACTCAGCAAGTTGCT
GTGCGTGCTGGCTGTGACTTGCGAAAAGGCGACCACCTACGGATTACATA
CACAAATATCCTATGGGGCACGCAACTTCGCCAGCACCATCTTCGACTAA
CGAAGCATTTCAGCTGCCGCTGCAGCCGCTGTCTCGATCCAACGGAATAT
GGCACCTATATAAGTGCGCTGACTTGTCTGGGGGATGTAAATCAGACCTG
TGGAGGAACCCACTTGCCCGTGGATCCACTGGACGAGAACACACAGTGGA
AGTGCGACACTTGCCCAATGATAGTGGATGGAGCTTACGTGGCTGAACTG
CAGTCCCACATGACCGAGCAGGTGGAGGGCTTATTAGCCGGATGCCCCTC
CGCGAATCAGGTGGAACTTCTGTTGGCCCGCCTGACCCATATGTTGCATC
CAAATCATTTTCACACGTTCAACCTAAAGCACACATTAATCCAGCTGTAT
GGTAACGAAGCTGGCTTGGAGTTGGGCGTGCTGAGCAACACGCAGCTGGA
GCGCAAACTGAGGCTCTGCGGTGAGCTCTACAACGTATGCCGGCGACTGG
ATCCATATAGCATTAAGCTGGCTATCTATGTCACGGTCATCCTGATCGAG
GTCGCCCACACGCTGCAGGAGCAGGCACGAAGGGCACCAGCAGAAGGAAC
TTCCCTCTTGGGTCTTGCGCAAAGCCGTCTTAGGGAAGCGCATATGGTTT
TGGAGAAAGAGCAAGAATCAGTTGCCGGCAAAAAGCTAAACGAAAAATTG
CAGATGGAAATCTTCGAGTGCGAAAAACTAATTTTAGCTCTTGCCTATAA
TCAAGATCACGAAGCCAATACAAAATAAAAGCTTTCTAGACCAT
BS14662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1662 | CG14590-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 7..1668 | 17..1678 | 8310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6078850..6080178 | 1678..350 | 6645 | 100 | Minus |
| 2R | 25286936 | 2R | 6080232..6080566 | 351..17 | 1675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 2077..2167 | 1588..1679 | 133 | 62 | Plus |
BS14662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:28 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..1662 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:22 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1659 | 17..1669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:20 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1659 | 17..1669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:24 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1659 | 17..1669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:10 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1659 | 17..1669 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:10 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6078859..6080176 | 352..1669 | 100 | <- | Minus |
| 2R | 6080232..6080566 | 17..351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:20 Download gff for
BS14662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1966364..1967681 | 352..1669 | 100 | <- | Minus |
| arm_2R | 1967737..1968071 | 17..351 | 100 | | Minus |
BS14662.3prime Sequence
774 bp (772 high quality bases) assembled on 2006-10-13
> BS14662.3prime
ATGGTCTAGAAAGCTTTTATTTTGTATTGGCTTCGTGATCTTGATTATAG
GCAAGAGCTAAAATTAGTTTTTCGCACTCGAAGATTTCCATCTGCAATTT
TTCGTTTAGCTTTTTGCCGGCAACTGATTCTTGCTCTTTCTCCAAAACCA
TATGCGCTTCCCTAAGACGGCTTTGCGCAAGACCCAAGAGGGAAGTTCCT
TCTGCTGGTGCCCTTCGTGCCTGCTCCTGCAGCGTGTGGGCGACCTCGAT
CAGGATGACCGTGACATAGATAGCCAGCTTAATGCTATATGGATCCAGTC
GCCGGCATACGTTGTAGAGCTCACCGCAGAGCCTCAGTTTGCGCTCCAGC
TGCGTGTTGCTCAGCACGCCCAACTCCAAGCCAGCTTCGTTACCATACAG
CTGGATTAATGTGTGCTTTAGGTTGAACGTGTGAAAATGATTTGGATGCA
ACATATGGGTCAGGCGGGCCAACAGAAGTTCCACCTGATTCGCGGAGGGG
CATCCGGCTAATAAGCCCTCCACCTGCTCGGTCATGTGGGACTGCAGTTC
AGCCACGTAAGCTCCATCCACTATCATTGGGCAAGTGTCGCACTTCCACT
GTGTGTTCTCGTCCAGTGGATCCACGGGCAAGTGGGTTCCTCCACAGGTC
TGATTTACATCCCCCAGACAAGTCAGCGCACTTATATAGGTGCCATATTC
CGTTGGATCGAGACAGCGGCTGCAGCGGCAGCTGAAATGCTTCGTTAGTC
GAAGATGGTGCTGGCGAAGTTGCG
BS14662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 1662 | CG14590-RA | 905..1662 | 774..17 | 3790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 911..1668 | 774..17 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6078850..6079607 | 17..774 | 3790 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 2077..2167 | 107..16 | 133 | 62 | Minus |
BS14662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:01 Download gff for
BS14662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 905..1662 | 17..774 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:53:56 Download gff for
BS14662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 911..1677 | 5..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:20:41 Download gff for
BS14662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 911..1677 | 5..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:20:41 Download gff for
BS14662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6078841..6079607 | 5..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:53:56 Download gff for
BS14662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1966346..1967112 | 5..774 | 99 | | Plus |
BS14662.5prime Sequence
806 bp (739 high quality bases) assembled on 2006-10-13
> BS14662.5prime
GAAGTTATCAGTCGACATGGTGTCAAGCACGGAATGTCCTGTTTGCGGAG
TTGCTGCCTCACAAGCGTGCACTAGGTGCAAAATGGTGCGATACTGCGAC
CGAGAGCACCAGAAGCAGCACTGGCCGCAGCACAAGCGCAGATGTAGGCC
ATTCAGCGAGGAGCAGGATGCCGAGCTGGGCAGATATTTGAAGGTTACCC
AGAACATAGCAGCCGGGCAAATAGTCTTCATTGAGGAGCCCCTAGTGGTG
GGTCCCAAGTGGTATCTCTCCGACGCAGACAAGGAGGCCTCTAACGTTCC
GTGTGTAGGCTGTTACACTCCGTGCCGTCTGGGGAAGCACCAGTGTCGAA
GATGCCGTTGGCCAGTCTGCAGCGCAGGCTGCAAGCACGAGTCAATGGAA
TGCAGCGTGCTTAGCCTCGGATCGGGTTCACCAACTCGGGCAGATGCCCG
CTCATTGAACGACTACTTCAGGGGCGATGCTCTTTTGGTGCTCAAATGCC
TTCTGTTGCAGCGACAGAGTCCCACGAAATGGTCCGCGTTGTTAGAGATG
CAGTCTCATGAGGAGGAGCGTAAGGGCACCGATCTGTACGAGGAAGCAGA
GAAGCGAGTAGTGACCTACCTTCAAAAGCGGTTTTTATGTAGACTTAAGC
AAACTAATCCAAACCTTCTGACCGATTGTGGACCAGAGATGCTGCATCGG
CTTTGCGGCATCATCGAAACAAACTTTATGGTTATCGAACTCCCGAGTGG
CGTGGAACTCAGCGGGTTGTTCCGGCAGGCCTGCATGATGGAGCATGCTT
GTCAGC
BS14662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 1662 | CG14590-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 7..796 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6079722..6080178 | 806..350 | 2285 | 100 | Minus |
| 2R | 25286936 | 2R | 6080232..6080566 | 351..17 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:51:05 has no hits.
BS14662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:01 Download gff for
BS14662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:54:01 Download gff for
BS14662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..796 | 14..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:26 Download gff for
BS14662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..796 | 14..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:26 Download gff for
BS14662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6080232..6080566 | 17..351 | 100 | | Minus |
| 2R | 6079722..6080176 | 352..806 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:54:01 Download gff for
BS14662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1967227..1967681 | 352..806 | 100 | <- | Minus |
| arm_2R | 1967737..1968071 | 17..351 | 100 | | Minus |
BS14662.pep Sequence
Translation from 16 to 1677
> BS14662.pep
MVSSTECPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQ
DAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCY
TPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDY
FRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVVT
YLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSG
LFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILW
GTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHL
PVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQVE
LLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRL
CGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGL
AQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECEKLILALAYNQDHEA
NTK*
BS14662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 553 | CG14590-PA | 1..553 | 1..553 | 2977 | 100 | Plus |
| CG18136-PA | 530 | CG18136-PA | 5..506 | 3..517 | 593 | 30.6 | Plus |
| CG8503-PA | 513 | CG8503-PA | 4..480 | 7..514 | 500 | 29.4 | Plus |
| CG43129-PC | 503 | CG43129-PC | 7..415 | 49..463 | 492 | 31 | Plus |
| CG43129-PE | 507 | CG43129-PE | 21..419 | 55..463 | 470 | 32 | Plus |
