Clone BS14664 Report

Search the DGRC for BS14664

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG32219-RA
Protein status:BS14664.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14664.5prime Sequence

483 bp (483 high quality bases) assembled on 2006-10-13

> BS14664.5prime
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACTAATAGCTTTCTAGACC

BS14664.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-PA 453 CG32219-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 997 CG32219-RA 64..516 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19950504..19950715 469..258 1060 100 Minus
3L 28110227 3L 19950766..19950936 257..87 855 100 Minus
3L 28110227 3L 19951003..19951072 86..17 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:39:55 has no hits.

BS14664.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:02 Download gff for BS14664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:22 Download gff for BS14664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:07 Download gff for BS14664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:07 Download gff for BS14664.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19950500..19950715 258..475 99 <- Minus
3L 19950766..19950936 87..257 100 <- Minus
3L 19951003..19951074 14..86 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:22 Download gff for BS14664.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19943600..19943815 258..475 99 <- Minus
arm_3L 19943866..19944036 87..257 100 <- Minus
arm_3L 19944103..19944174 14..86 98   Minus

BS14664.3prime Sequence

483 bp (483 high quality bases) assembled on 2006-10-13

> BS14664.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGAAAGTAATTGCAACCGATCAGCAGT
AATGAGAGTAGCAAGATAAGTTTCTGTGGATAACTAGAGCTCCTCCCATC
TCCTGTAGTTCTTTGGCAAAAATACTTGCAGTTATTGCACAAGTCTTTAT
TGCTGAAATACTTTTCATTGACTAGTATCGTACAGCCCAGCTTCGGTGAC
CAGAAACAGCAGTATTCCTGAATGGGATATTTTATCTCAAAACAGTTTGG
CACACATTCAGCAAACGCACTTTCCTCATCCGATGCAAATCTTAAAATTG
AGTTTTGGTCATCTTTATGGCAATGGAACCCAACCACCTGGCCATTGTTG
TTACTTATGCCCGGACAACATCCACAATCGTAATGATCTTCGACAGCCGA
ATGATTATGATTACAATCTTCGTAAGTATTTCGATAAAGTAAAAAAAACA
CTAAAACCTGTATTAGCATGTCGACTGATAACT

BS14664.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-PA 453 CG32219-RA 1..453 469..17 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 997 CG32219-RA 64..517 469..16 2270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19950503..19950715 16..228 1065 100 Plus
3L 28110227 3L 19950766..19950936 229..399 855 100 Plus
3L 28110227 3L 19951003..19951072 400..469 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:39:36 has no hits.

BS14664.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:01 Download gff for BS14664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-PA 1..453 17..469 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:20 Download gff for BS14664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 11..472 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:04 Download gff for BS14664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 11..472 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:04 Download gff for BS14664.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19950500..19950715 11..228 99 <- Plus
3L 19950766..19950936 229..399 100 <- Plus
3L 19951003..19951074 400..472 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:20 Download gff for BS14664.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19943600..19943815 11..228 99 <- Plus
arm_3L 19943866..19944036 229..399 100 <- Plus
arm_3L 19944103..19944174 400..472 98   Plus

BS14664.complete Sequence

485 bp assembled on 2006-11-01

GenBank Submission: FJ637749

> BS14664.complete
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACTAAAAGCTTTCTAGACCAT

BS14664.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 453 CG32219-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 997 CG32219-RA 64..517 17..470 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19950503..19950715 470..258 1065 100 Minus
3L 28110227 3L 19950766..19950936 257..87 855 100 Minus
3L 28110227 3L 19951003..19951072 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:56:01 has no hits.

BS14664.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:21 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:49 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:05 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 64..514 17..467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:21 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:56 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 64..514 17..467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:56 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19950506..19950715 258..467 100 <- Minus
3L 19950766..19950936 87..257 100 <- Minus
3L 19951003..19951072 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:05 Download gff for BS14664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19943606..19943815 258..467 100 <- Minus
arm_3L 19943866..19944036 87..257 100 <- Minus
arm_3L 19944103..19944172 17..86 100   Minus

BS14664.pep Sequence

Translation from 16 to 468

> BS14664.pep
MLIQVLVFFLLYRNTYEDCNHNHSAVEDHYDCGCCPGISNNNGQVVGFHC
HKDDQNSILRFASDEESAFAECVPNCFEIKYPIQEYCCFWSPKLGCTILV
NEKYFSNKDLCNNCKYFCQRTTGDGRSSSYPQKLILLLSLLLIGCNYFQN
*

BS14664.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-PA 150 CG32219-PA 1..150 1..150 850 100 Plus
CG34258-PA 165 CG34258-PA 59..164 48..143 177 34.9 Plus
CG33710-PA 162 CG33710-PA 45..131 32..118 168 35.2 Plus