Clone Sequence Records
BS14664.5prime Sequence
483 bp (483 high quality bases) assembled on 2006-10-13
> BS14664.5prime
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACTAATAGCTTTCTAGACC
BS14664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-PA | 453 | CG32219-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 997 | CG32219-RA | 64..516 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19950504..19950715 | 469..258 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 19950766..19950936 | 257..87 | 855 | 100 | Minus |
3L | 28110227 | 3L | 19951003..19951072 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:39:55 has no hits.
BS14664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:02 Download gff for
BS14664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-PA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:22 Download gff for
BS14664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:07 Download gff for
BS14664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:07 Download gff for
BS14664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19950500..19950715 | 258..475 | 99 | <- | Minus |
3L | 19950766..19950936 | 87..257 | 100 | <- | Minus |
3L | 19951003..19951074 | 14..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:22 Download gff for
BS14664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19943600..19943815 | 258..475 | 99 | <- | Minus |
arm_3L | 19943866..19944036 | 87..257 | 100 | <- | Minus |
arm_3L | 19944103..19944174 | 14..86 | 98 | | Minus |
BS14664.3prime Sequence
483 bp (483 high quality bases) assembled on 2006-10-13
> BS14664.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGAAAGTAATTGCAACCGATCAGCAGT
AATGAGAGTAGCAAGATAAGTTTCTGTGGATAACTAGAGCTCCTCCCATC
TCCTGTAGTTCTTTGGCAAAAATACTTGCAGTTATTGCACAAGTCTTTAT
TGCTGAAATACTTTTCATTGACTAGTATCGTACAGCCCAGCTTCGGTGAC
CAGAAACAGCAGTATTCCTGAATGGGATATTTTATCTCAAAACAGTTTGG
CACACATTCAGCAAACGCACTTTCCTCATCCGATGCAAATCTTAAAATTG
AGTTTTGGTCATCTTTATGGCAATGGAACCCAACCACCTGGCCATTGTTG
TTACTTATGCCCGGACAACATCCACAATCGTAATGATCTTCGACAGCCGA
ATGATTATGATTACAATCTTCGTAAGTATTTCGATAAAGTAAAAAAAACA
CTAAAACCTGTATTAGCATGTCGACTGATAACT
BS14664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-PA | 453 | CG32219-RA | 1..453 | 469..17 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 997 | CG32219-RA | 64..517 | 469..16 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19950503..19950715 | 16..228 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 19950766..19950936 | 229..399 | 855 | 100 | Plus |
3L | 28110227 | 3L | 19951003..19951072 | 400..469 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:39:36 has no hits.
BS14664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:01 Download gff for
BS14664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-PA | 1..453 | 17..469 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:20 Download gff for
BS14664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 11..472 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:04 Download gff for
BS14664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 11..472 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:04 Download gff for
BS14664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19950500..19950715 | 11..228 | 99 | <- | Plus |
3L | 19950766..19950936 | 229..399 | 100 | <- | Plus |
3L | 19951003..19951074 | 400..472 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:20 Download gff for
BS14664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19943600..19943815 | 11..228 | 99 | <- | Plus |
arm_3L | 19943866..19944036 | 229..399 | 100 | <- | Plus |
arm_3L | 19944103..19944174 | 400..472 | 98 | | Plus |
BS14664.complete Sequence
485 bp assembled on 2006-11-01
GenBank Submission: FJ637749
> BS14664.complete
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACTAAAAGCTTTCTAGACCAT
BS14664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 453 | CG32219-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 997 | CG32219-RA | 64..517 | 17..470 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19950503..19950715 | 470..258 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 19950766..19950936 | 257..87 | 855 | 100 | Minus |
3L | 28110227 | 3L | 19951003..19951072 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:01 has no hits.
BS14664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:21 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:49 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:05 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 64..514 | 17..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:21 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:56 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 64..514 | 17..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:56 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19950506..19950715 | 258..467 | 100 | <- | Minus |
3L | 19950766..19950936 | 87..257 | 100 | <- | Minus |
3L | 19951003..19951072 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:05 Download gff for
BS14664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19943606..19943815 | 258..467 | 100 | <- | Minus |
arm_3L | 19943866..19944036 | 87..257 | 100 | <- | Minus |
arm_3L | 19944103..19944172 | 17..86 | 100 | | Minus |
BS14664.pep Sequence
Translation from 16 to 468
> BS14664.pep
MLIQVLVFFLLYRNTYEDCNHNHSAVEDHYDCGCCPGISNNNGQVVGFHC
HKDDQNSILRFASDEESAFAECVPNCFEIKYPIQEYCCFWSPKLGCTILV
NEKYFSNKDLCNNCKYFCQRTTGDGRSSSYPQKLILLLSLLLIGCNYFQN
*
BS14664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-PA | 150 | CG32219-PA | 1..150 | 1..150 | 850 | 100 | Plus |
CG34258-PA | 165 | CG34258-PA | 59..164 | 48..143 | 177 | 34.9 | Plus |
CG33710-PA | 162 | CG33710-PA | 45..131 | 32..118 | 168 | 35.2 | Plus |