Clone Sequence Records
BS14666.complete Sequence
1784 bp assembled on 2009-12-07
GenBank Submission: KX801076
> BS14666.complete
GAAGTTATCAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAA
ATTGGGCGATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGG
CACAGGCACCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAG
CCTGGTGCCCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGA
CCACGCAATGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAA
GTCCTTGGATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCC
AGTGGCCTTGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCC
GACTGTGCCATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAG
GACGATTCCGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAA
ACTTTCGCACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCT
TCCTCTGCGTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCC
AAAACTCACCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTC
CAACTGGGAGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCA
ACGACGCACTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTG
CAGCCAAAACACTTTTGGCAACGAAGGCAACTGGACGACAATAGCATGCA
CAACAAATTCGAACCCTTTCTCGACGTGGACTTCACGAAAGGCTTCACAC
TCAACCCGTCCGGCAGCGGAGTAACTCGTTCAAAGGGCTCCACCCAATCC
AAAAGCAATAAATGGGTGCCCAAGAAGCAACCGTACCGGCAAATAGCTAC
CCGAACCAAAGACTTCTACGATAACTGCCTGCTGCAGGCGCCCGATGGCG
AACTCCTGTGTACAATTGACAGGCGCAAGGCGTCCTGGTATCTCAATCAA
AATCTGGGCACGCATATAAGCGAAGAGCCCTTCACTGTCCGCCTTAACTT
CGAGCCAGCGGGTCGAGCGGTCGGAGATGTGGGGCGCTTCTATCAAACAA
TCAAGAAAAACCAGTGCGTGGTGTGTGGTGACCGGGATGCGTACATTCGG
AAGAACGTGGTACCGCGGGAATACAGAAAGCATTTCCCATTGGTCATGAA
ATCTCACACCTCCGACGATGTGCTGCTCCTGTGCCCAACCTGCCACCAGC
TAAGCAACATCTCGGATCTAAGGGTTCGCAGCAAACTGGCCGTGCAGTGC
GAAGCTCCTTTCAAGCAGGAAGACGGATCTGTCAAGTACCATGATGATCC
GCAGCTCAAACGAGTCCAATCCGCTGGCAAGGCACTACTTCATCATGGCG
CGAAAATACCCGCTGCAAAGAAGGCCGAAATGGAAAAGACTCTCCTCGAT
TACTACTCCGATCAAACGGACATCACAGAAGATCTCCTGCGGCAAGCAGC
CAGCGTGGAATATCGCGTAGAAAACTCCGACTACTGTCAGCATGGCGAGC
GGGTGGTGCAGCAATATCGCGATCATTTCGGCGGCCTGGTGGAGCTGGAG
CGCTTATGGCGGCAGCACTTTCTGCACACAATGCAGCCCCGCTTTTTGCC
CGAACTCTGGAATGTCAACCACAATGCCGATCGACTGGAAGTTCGCGCCA
GCGAGGGTCGCATCGATAAAGCCGATCTTATGGTGGCCGGATTGGATGCG
AAGATTAAAGAAACGTGAAAGCTTTCTAGACCAT
BS14666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1752 | CG6744-PB | 1..1752 | 17..1768 | 8760 | 100 | Plus |
| CG6744-RA | 1752 | CG6744-PA | 1..1752 | 17..1768 | 8760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..1783 | 17..1768 | 8760 | 100 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..1879 | 17..1768 | 8760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434172..11435299 | 1359..232 | 5640 | 100 | Minus |
| 3R | 32079331 | 3R | 11433556..11433964 | 1768..1360 | 2045 | 100 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 231..17 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:24 has no hits.
BS14666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:32 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1878 | 17..1767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:49 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1878 | 17..1767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:17 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1878 | 17..1767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:15 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1878 | 17..1767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:15 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11433557..11433964 | 1360..1767 | 100 | <- | Minus |
| 3R | 11434172..11435299 | 232..1359 | 100 | <- | Minus |
| 3R | 11435362..11435576 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:49 Download gff for
BS14666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7259279..7259686 | 1360..1767 | 100 | <- | Minus |
| arm_3R | 7259894..7261021 | 232..1359 | 100 | <- | Minus |
| arm_3R | 7261084..7261298 | 17..231 | 100 | | Minus |
BS14666.3prime Sequence
831 bp (726 high quality bases) assembled on 2006-10-13
> BS14666.3prime
ATGGTCTAGAAAGCTTTCACGTTTCTTTAATCTTCGCATCCAATCCGGCC
ACCATAAGATCGGCTTTATCGATGCGACCCTCGCTGGCGCGAACTTCCAG
TCGATCGGCATTGTGGTTGACATTCCAGAGTTCGGGCAAAAAGCGGGGCT
GCATTGTGTGCAGAAAGTGCTGCCGCCATAAGCGCTCCAGCTCCACCAGG
CCGCCGAAATGATCGCGATATTGCTGCACCACCCGCTCGCCATGCTGACA
GTAGTCGGAGTTTTCTACGCGATATTCCACGCTGGCTGCTTGCCGCAGGA
GATCTTCTGTGATGTCCGTTTGATCGGAGTAGTAATCGAGGAGAGTCTTT
TCCATTTCGGCCTTCTTTGCAGCGGGTATTTTCGCGCCATGATGAAGTAG
TGCCTTGCCAGCGGATTGGACTCGTTTGAGCTGCGGATCATCATGGTACT
TGACAGATCCGTCTTCCTGCTTGAAAGGAGCTTCGCACTGCACGGCCAGT
TTGCTGCGAACCCTTAGATCCGAGATGTTGCTTAGCTGGTGGCAGGTTGG
GCACAGGAGCAGCACATCGTCGGAGGTGTGAGATTTCATGACCAATGGGA
AATGCTTTCTGTATTCCCGCGGTACCACGTTCTTCCGAATGTACGCATCC
CGGTCACCACACACCACGCACTGGTTTTTCTTGATTGTTTGATAGAAGCG
CCCCACATCTCCGACCGCTCGACCCGCTGGCTCGAAGTTAAAGCGGACAG
TGAAGGGCTCTTCGCTTATATGCGTGCCCAGATTTTGATTGAGATACCAG
GACGCCCTTGCGCTGTCAATTGTACACAGGA
BS14666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PA | 1752 | CG6744-RA | 938..1752 | 831..17 | 3975 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 969..1783 | 831..17 | 4015 | 99.6 | Minus |
| CG6744-RA | 1947 | CG6744-RA | 1065..1879 | 831..17 | 4015 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11433556..11433964 | 17..425 | 2045 | 100 | Plus |
| 3R | 32079331 | 3R | 11434172..11434577 | 426..831 | 1940 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:04:53 has no hits.
BS14666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:03 Download gff for
BS14666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 939..1752 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:10:19 Download gff for
BS14666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 1066..1882 | 13..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:24 Download gff for
BS14666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 1066..1882 | 13..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:24 Download gff for
BS14666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11433553..11433964 | 13..425 | 99 | <- | Plus |
| 3R | 11434172..11434576 | 426..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:10:19 Download gff for
BS14666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7259275..7259686 | 13..425 | 99 | <- | Plus |
| arm_3R | 7259894..7260298 | 426..830 | 99 | | Plus |
BS14666.5prime Sequence
716 bp (714 high quality bases) assembled on 2006-10-13
> BS14666.5prime
GAAGTTATCAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAA
ATTGGGCGATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGG
CACAGGCACCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAG
CCTGGTGCCCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGA
CCACGCAATGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAA
GTCCTTGGATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCC
AGTGGCCTTGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCC
GACTGTGCCATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAG
GACGATTCCGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAA
ACTTTCGCACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCT
TCCTCTGCGTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCC
AAAACTCACCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTC
CAACTGGGAGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCA
ACGACGCACTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTG
CAGCCAAAACACTTTT
BS14666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PA | 1752 | CG6744-RA | 1..700 | 17..716 | 3500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..731 | 17..716 | 3500 | 100 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..827 | 17..716 | 3500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434815..11435299 | 716..232 | 2425 | 100 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 231..17 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:19 has no hits.
BS14666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:03 Download gff for
BS14666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 1..700 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:08 Download gff for
BS14666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..827 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:45 Download gff for
BS14666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..827 | 17..716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:45 Download gff for
BS14666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11434815..11435299 | 232..716 | 100 | <- | Minus |
| 3R | 11435362..11435576 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:08 Download gff for
BS14666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7260537..7261021 | 232..716 | 100 | <- | Minus |
| arm_3R | 7261084..7261298 | 17..231 | 100 | | Minus |
BS14666.pep Sequence
Translation from 16 to 1767
> BS14666.pep
MTRESAVATKRNWAILAAGVGLVYVLVRHRHRLLCPLRRVWSFGSLVPQR
RIEVINSVQDPTTQWVLNELKNHCQTFKVLGFDCEWITVGGSRRPVALLQ
LSSHRGLCALFRLCHMKQIPQDLRELLEDDSVIKVGVAPQEDAMKLSHDY
GVGVASTLDLRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAK
TLEPKQLDYAANDALMAVAIYQKLCRDLQPKHFWQRRQLDDNSMHNKFEP
FLDVDFTKGFTLNPSGSGVTRSKGSTQSKSNKWVPKKQPYRQIATRTKDF
YDNCLLQAPDGELLCTIDRRKASWYLNQNLGTHISEEPFTVRLNFEPAGR
AVGDVGRFYQTIKKNQCVVCGDRDAYIRKNVVPREYRKHFPLVMKSHTSD
DVLLLCPTCHQLSNISDLRVRSKLAVQCEAPFKQEDGSVKYHDDPQLKRV
QSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDLLRQAASVEYR
VENSDYCQHGERVVQQYRDHFGGLVELERLWRQHFLHTMQPRFLPELWNV
NHNADRLEVRASEGRIDKADLMVAGLDAKIKET*
BS14666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PB | 583 | CG6744-PB | 1..583 | 1..583 | 3109 | 100 | Plus |
| CG6744-PA | 583 | CG6744-PA | 1..583 | 1..583 | 3109 | 100 | Plus |
