Clone BS14672 Report

Search the DGRC for BS14672

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS14672.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS14672.3prime Sequence

858 bp (675 high quality bases) assembled on 2006-10-13

> BS14672.3prime
ATGGTCTAGAAAGCTTTCAGAGCACCATGGTGCGGAACAAGATGGTGAAT
CCAGCGATTGTGCAGAACATGAAAAGCGTCAGGATACTTCCGCCCAGCAG
AAATTGAAAAGGTCTGACATTGCCCCAGCCGGCGACAATTGTGTTGGCCG
GGCTGCTCACGGGCAGCAAAAACTGATTGTGCAACGCGGTGGCAAATGGC
AGTGAAAAGGAATTACCCGCGGTTACCATGGTGGGCAATGCCAACTTGGC
CACGGTGGTGGCCGGCGACAGCGTGGTCCAAAGTGTTCCAAGCAAGGCGC
CGCAGATGAAGCTCTTCATATTGAATCCCTTGTTATCGGAGTTCATCGAA
TCCGCCAAGTAGGTGTTCAATCCACAAACAGCGGAACTATAGCTAAAGCT
GAAGGCGGCGCCCAGCATAAAGATTTCCGCCCAGGGAGTATTGTTGTTGA
CCGCCTTCCAGCCCAGAAGTGAATTGGCAGGACCCTCTTTCTCCGGCTGG
CGGCAAACATAGTATCTGCAGAATATATAGTTGGCCGGAATTGCGAAGAA
GAGAATGGACATGCCAATGCCGGCCACTGAGAGACCAGATTCCGCCTTAT
AGTTTATACTATCCCAGCCCGTAAAGATGCGCGGCTTGCGAGTGGCCACC
AGCAGGAACATCAATAGAATCAAGCTCAAGGCCAAGATGGGATATATTCC
CCAGGGACCAAGAGCCTGTTTTCTTTCAGACGCGGTCTGTTTAAAGCCCG
CCTTAGCCCCAGCCATTTCCGCCAGATCGCGCTTCACACTGCCTCCAGGG
AGACCGAGGAAGAGGACTTGCAACCAGAAGATCATGACAACGAGACCCAT
TAGAGCTG

BS14672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-PA 1380 CG7309-RA 539..1380 858..17 4160 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-RC 2093 CG7309-RC 827..1669 858..16 4185 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10907080..10907721 217..858 3180 99.7 Plus
2L 23513712 2L 10906847..10906964 101..218 590 100 Plus
2L 23513712 2L 10906694..10906778 16..100 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:12:26 has no hits.

BS14672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:07 Download gff for BS14672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-PA 539..1380 17..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:38 Download gff for BS14672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 827..1669 16..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:56 Download gff for BS14672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 827..1669 16..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:56 Download gff for BS14672.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10906694..10906778 16..100 100 <- Plus
2L 10906847..10906963 101..217 100 <- Plus
2L 10907081..10907721 218..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:38 Download gff for BS14672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10906694..10906778 16..100 100 <- Plus
arm_2L 10906847..10906963 101..217 100 <- Plus
arm_2L 10907081..10907721 218..858 99   Plus

BS14672.5prime Sequence

873 bp (763 high quality bases) assembled on 2006-10-13

> BS14672.5prime
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGCCGGCATTGGC
ATGTCCATTCTCTTCTTCCCATT

BS14672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-PA 1380 CG7309-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-RC 2093 CG7309-RC 289..1140 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10907408..10907763 868..513 1780 100 Minus
2L 23513712 2L 10908282..10908490 225..17 1045 100 Minus
2L 23513712 2L 10907826..10907950 515..391 625 100 Minus
2L 23513712 2L 10908114..10908229 341..226 580 100 Minus
2L 23513712 2L 10908013..10908062 390..341 250 100 Minus
Blast to na_te.dros performed 2015-02-10 17:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 7412..7471 318..259 110 68.9 Minus

BS14672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:07 Download gff for BS14672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:46 Download gff for BS14672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 289..1145 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:57 Download gff for BS14672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 289..1145 17..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:57 Download gff for BS14672.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10907402..10907762 514..873 99 <- Minus
2L 10907828..10907950 391..513 100 <- Minus
2L 10908013..10908062 341..390 100 <- Minus
2L 10908115..10908229 226..340 100 <- Minus
2L 10908282..10908490 17..225 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:46 Download gff for BS14672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10907402..10907762 514..873 99 <- Minus
arm_2L 10907828..10907950 391..513 100 <- Minus
arm_2L 10908013..10908062 341..390 100 <- Minus
arm_2L 10908115..10908229 226..340 100 <- Minus
arm_2L 10908282..10908490 17..225 100   Minus

BS14672.complete Sequence

1412 bp assembled on 2006-11-01

> BS14672.complete
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGCCGGCATTGGC
ATGTCCATTCTCTTCTTCGCAATTCCGGCCAACTATATATTCTGCAGATA
CTATGTTTGCCGCCAGCCGGAGAAAGAGGGTCCTGCCAATTCACTTCTGG
GCTGGAAGGCGGTCAACAACAATACTCCCTGGGCGGAAATCTTTATGCTG
GGCGCCGCCTTCAGCTTTAGCTATAGTTCCGCTGTTTGTGGATTGAACAC
CTACTTGGCGGATTCGATGAACTCCGATAACAAGGGATTCAATATGAAGA
GCTTCATCTGCGGCGCCTTGCTTGGAACACTTTGGACCACGCTGTCGCCG
GCCACCACCGTGGCCAAGTTGGCATTGCCCACCATGGTAACCGCGGGTAA
TTCCTTTTCACTGCCATTTGCCACCGCGTTGCACAATCAGTTTTTGCTGC
CCGTGAGCAGCCCGGCCAACACAATTGTCGCCGGCTGGGGCAATGTCAGA
CCTTTTCAATTTCTGCTGGGCGGAAGTATCCTGACGCTTTTCATGTTCTG
CACAATCGCTGGATTCACCATCTTGTTCCGCACCATGGTGCTCTGAAAGC
TTTCTAGACCAT

BS14672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-RC 1587 CG7309-PC 208..1587 17..1396 6885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-RC 2093 CG7309-RC 289..1669 17..1397 6890 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10907080..10907763 1196..513 3405 99.9 Minus
2L 23513712 2L 10908282..10908490 225..17 1045 100 Minus
2L 23513712 2L 10907826..10907950 515..391 625 100 Minus
2L 23513712 2L 10906847..10906964 1312..1195 590 100 Minus
2L 23513712 2L 10908114..10908229 341..226 580 100 Minus
2L 23513712 2L 10906694..10906778 1397..1313 425 100 Minus
2L 23513712 2L 10908013..10908062 390..341 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:05:50 has no hits.

BS14672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:37 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
CG7309-RB 205..1584 17..1396 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:34 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
CG7309-RB 206..1586 17..1397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:19 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 289..1667 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:38 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
CG7309-RB 206..1586 17..1397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:25 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
CG7309-RC 289..1667 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:25 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10908115..10908229 226..340 100 <- Minus
2L 10908282..10908490 17..225 100   Minus
2L 10906696..10906778 1313..1395 100 <- Minus
2L 10906847..10906963 1196..1312 100 <- Minus
2L 10907081..10907762 514..1195 99 <- Minus
2L 10907828..10907950 391..513 100 <- Minus
2L 10908013..10908062 341..390 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:19 Download gff for BS14672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10906847..10906963 1196..1312 100 <- Minus
arm_2L 10906696..10906778 1313..1395 100 <- Minus
arm_2L 10907081..10907762 514..1195 99 <- Minus
arm_2L 10907828..10907950 391..513 100 <- Minus
arm_2L 10908013..10908062 341..390 100 <- Minus
arm_2L 10908115..10908229 226..340 100 <- Minus
arm_2L 10908282..10908490 17..225 100   Minus

BS14672.pep Sequence

Translation from 16 to 1395

> BS14672.pep
MARGAAAFIYMVFIPVAGIASSKEISVSYYTDLIFFVYSAIFMGIMMDSS
KLSDRLAFIVISLVGGSLKFLQIFLTIAAAIVSILVNPTISAAFWMKVSQ
AVMVEYDNGGLIKLNSEEKPYEIGSKPYPTRPVIGIYLTCCYAASLAASL
SPIVNPNGVISDGFGGSLTVLEIGMLMAGPALMGLVVMIFWLQVLFLGLL
GGSVKRDLAEMAGAKAGFKQTASERKQALGPWGIYPILALSLILLMFLLV
ATRKPRIFTGWDSINYKAESGLSVAGIGMSILFFAIPANYIFCRYYVCRQ
PEKEGPANSLLGWKAVNNNTPWAEIFMLGAAFSFSYSSAVCGLNTYLADS
MNSDNKGFNMKSFICGALLGTLWTTLSPATTVAKLALPTMVTAGNSFSLP
FATALHNQFLLPVSSPANTIVAGWGNVRPFQFLLGGSILTLFMFCTIAGF
TILFRTMVL*

BS14672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7309-PC 528 CG7309-PC 70..528 1..459 2338 100 Plus
Indy-PD 572 CG3979-PD 71..548 7..452 431 26.8 Plus
Indy-PA 572 CG3979-PA 71..548 7..452 431 26.8 Plus
Indy-PC 572 CG3979-PC 71..548 7..452 431 26.8 Plus
Indy-PB 590 CG3979-PB 89..566 7..452 431 26.8 Plus