Clone Sequence Records
BS14672.3prime Sequence
858 bp (675 high quality bases) assembled on 2006-10-13
> BS14672.3prime
ATGGTCTAGAAAGCTTTCAGAGCACCATGGTGCGGAACAAGATGGTGAAT
CCAGCGATTGTGCAGAACATGAAAAGCGTCAGGATACTTCCGCCCAGCAG
AAATTGAAAAGGTCTGACATTGCCCCAGCCGGCGACAATTGTGTTGGCCG
GGCTGCTCACGGGCAGCAAAAACTGATTGTGCAACGCGGTGGCAAATGGC
AGTGAAAAGGAATTACCCGCGGTTACCATGGTGGGCAATGCCAACTTGGC
CACGGTGGTGGCCGGCGACAGCGTGGTCCAAAGTGTTCCAAGCAAGGCGC
CGCAGATGAAGCTCTTCATATTGAATCCCTTGTTATCGGAGTTCATCGAA
TCCGCCAAGTAGGTGTTCAATCCACAAACAGCGGAACTATAGCTAAAGCT
GAAGGCGGCGCCCAGCATAAAGATTTCCGCCCAGGGAGTATTGTTGTTGA
CCGCCTTCCAGCCCAGAAGTGAATTGGCAGGACCCTCTTTCTCCGGCTGG
CGGCAAACATAGTATCTGCAGAATATATAGTTGGCCGGAATTGCGAAGAA
GAGAATGGACATGCCAATGCCGGCCACTGAGAGACCAGATTCCGCCTTAT
AGTTTATACTATCCCAGCCCGTAAAGATGCGCGGCTTGCGAGTGGCCACC
AGCAGGAACATCAATAGAATCAAGCTCAAGGCCAAGATGGGATATATTCC
CCAGGGACCAAGAGCCTGTTTTCTTTCAGACGCGGTCTGTTTAAAGCCCG
CCTTAGCCCCAGCCATTTCCGCCAGATCGCGCTTCACACTGCCTCCAGGG
AGACCGAGGAAGAGGACTTGCAACCAGAAGATCATGACAACGAGACCCAT
TAGAGCTG
BS14672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PA | 1380 | CG7309-RA | 539..1380 | 858..17 | 4160 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 827..1669 | 858..16 | 4185 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907080..10907721 | 217..858 | 3180 | 99.7 | Plus |
2L | 23513712 | 2L | 10906847..10906964 | 101..218 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10906694..10906778 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:12:26 has no hits.
BS14672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:07 Download gff for
BS14672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 539..1380 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:38 Download gff for
BS14672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 827..1669 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:56 Download gff for
BS14672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 827..1669 | 16..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:56 Download gff for
BS14672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10906694..10906778 | 16..100 | 100 | <- | Plus |
2L | 10906847..10906963 | 101..217 | 100 | <- | Plus |
2L | 10907081..10907721 | 218..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:38 Download gff for
BS14672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10906694..10906778 | 16..100 | 100 | <- | Plus |
arm_2L | 10906847..10906963 | 101..217 | 100 | <- | Plus |
arm_2L | 10907081..10907721 | 218..858 | 99 | | Plus |
BS14672.5prime Sequence
873 bp (763 high quality bases) assembled on 2006-10-13
> BS14672.5prime
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGCCGGCATTGGC
ATGTCCATTCTCTTCTTCCCATT
BS14672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PA | 1380 | CG7309-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 289..1140 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907408..10907763 | 868..513 | 1780 | 100 | Minus |
2L | 23513712 | 2L | 10908282..10908490 | 225..17 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 10907826..10907950 | 515..391 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10908114..10908229 | 341..226 | 580 | 100 | Minus |
2L | 23513712 | 2L | 10908013..10908062 | 390..341 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7412..7471 | 318..259 | 110 | 68.9 | Minus |
BS14672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:07 Download gff for
BS14672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:46 Download gff for
BS14672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1145 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:57 Download gff for
BS14672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1145 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:57 Download gff for
BS14672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10907402..10907762 | 514..873 | 99 | <- | Minus |
2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
2L | 10908282..10908490 | 17..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:46 Download gff for
BS14672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10907402..10907762 | 514..873 | 99 | <- | Minus |
arm_2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
arm_2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
arm_2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
arm_2L | 10908282..10908490 | 17..225 | 100 | | Minus |
BS14672.complete Sequence
1412 bp assembled on 2006-11-01
> BS14672.complete
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGCCGGCATTGGC
ATGTCCATTCTCTTCTTCGCAATTCCGGCCAACTATATATTCTGCAGATA
CTATGTTTGCCGCCAGCCGGAGAAAGAGGGTCCTGCCAATTCACTTCTGG
GCTGGAAGGCGGTCAACAACAATACTCCCTGGGCGGAAATCTTTATGCTG
GGCGCCGCCTTCAGCTTTAGCTATAGTTCCGCTGTTTGTGGATTGAACAC
CTACTTGGCGGATTCGATGAACTCCGATAACAAGGGATTCAATATGAAGA
GCTTCATCTGCGGCGCCTTGCTTGGAACACTTTGGACCACGCTGTCGCCG
GCCACCACCGTGGCCAAGTTGGCATTGCCCACCATGGTAACCGCGGGTAA
TTCCTTTTCACTGCCATTTGCCACCGCGTTGCACAATCAGTTTTTGCTGC
CCGTGAGCAGCCCGGCCAACACAATTGTCGCCGGCTGGGGCAATGTCAGA
CCTTTTCAATTTCTGCTGGGCGGAAGTATCCTGACGCTTTTCATGTTCTG
CACAATCGCTGGATTCACCATCTTGTTCCGCACCATGGTGCTCTGAAAGC
TTTCTAGACCAT
BS14672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 1587 | CG7309-PC | 208..1587 | 17..1396 | 6885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 289..1669 | 17..1397 | 6890 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907080..10907763 | 1196..513 | 3405 | 99.9 | Minus |
2L | 23513712 | 2L | 10908282..10908490 | 225..17 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 10907826..10907950 | 515..391 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10906847..10906964 | 1312..1195 | 590 | 100 | Minus |
2L | 23513712 | 2L | 10908114..10908229 | 341..226 | 580 | 100 | Minus |
2L | 23513712 | 2L | 10906694..10906778 | 1397..1313 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10908013..10908062 | 390..341 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:50 has no hits.
BS14672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:37 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 205..1584 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:34 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 206..1586 | 17..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:19 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1667 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:38 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 206..1586 | 17..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:25 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1667 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:25 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
2L | 10908282..10908490 | 17..225 | 100 | | Minus |
2L | 10906696..10906778 | 1313..1395 | 100 | <- | Minus |
2L | 10906847..10906963 | 1196..1312 | 100 | <- | Minus |
2L | 10907081..10907762 | 514..1195 | 99 | <- | Minus |
2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:19 Download gff for
BS14672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10906847..10906963 | 1196..1312 | 100 | <- | Minus |
arm_2L | 10906696..10906778 | 1313..1395 | 100 | <- | Minus |
arm_2L | 10907081..10907762 | 514..1195 | 99 | <- | Minus |
arm_2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
arm_2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
arm_2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
arm_2L | 10908282..10908490 | 17..225 | 100 | | Minus |
BS14672.pep Sequence
Translation from 16 to 1395
> BS14672.pep
MARGAAAFIYMVFIPVAGIASSKEISVSYYTDLIFFVYSAIFMGIMMDSS
KLSDRLAFIVISLVGGSLKFLQIFLTIAAAIVSILVNPTISAAFWMKVSQ
AVMVEYDNGGLIKLNSEEKPYEIGSKPYPTRPVIGIYLTCCYAASLAASL
SPIVNPNGVISDGFGGSLTVLEIGMLMAGPALMGLVVMIFWLQVLFLGLL
GGSVKRDLAEMAGAKAGFKQTASERKQALGPWGIYPILALSLILLMFLLV
ATRKPRIFTGWDSINYKAESGLSVAGIGMSILFFAIPANYIFCRYYVCRQ
PEKEGPANSLLGWKAVNNNTPWAEIFMLGAAFSFSYSSAVCGLNTYLADS
MNSDNKGFNMKSFICGALLGTLWTTLSPATTVAKLALPTMVTAGNSFSLP
FATALHNQFLLPVSSPANTIVAGWGNVRPFQFLLGGSILTLFMFCTIAGF
TILFRTMVL*
BS14672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PC | 528 | CG7309-PC | 70..528 | 1..459 | 2338 | 100 | Plus |
Indy-PD | 572 | CG3979-PD | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PA | 572 | CG3979-PA | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PC | 572 | CG3979-PC | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PB | 590 | CG3979-PB | 89..566 | 7..452 | 431 | 26.8 | Plus |