Clone Sequence Records
BS14673.3prime Sequence
858 bp (731 high quality bases) assembled on 2006-10-13
> BS14673.3prime
ATGGTCTAGAAAGCTTCTACAGATTTCTTTTATTTGACTTATTAATTTTT
CGGCGTTTTAAAATCATATCATACAGAGCGTCCAAACCTTCTTGGAGACC
CTCACCAGTTATAGCACAGGTTGGCTGTATATACCACCCCCTAAATTGCA
CAGAATTTGATGAAGACCTGTTCATCTTTTTGTTATGAAAACCATTTTTA
ACATCTTGTGGGTTTTTTTGATCCAGTACAGCAGAATTGTTGTGAGATTG
CGGATATATAAAAGCTGTCAAGGCTCCTCCGCTTAACGTGGAATTGTGGT
CTTTACTTTCAAGTGCAGGTTTTATGTGAATCATAGACGAATGCAGATGA
CTCTCTTTTTTCTCTTCTAAAGATTTATCTGTAATACTTTGGTTTGAAAC
TCTACAGCCAATTAAATTAATTGTGGGAGAAGAGTCGGAACTAGAGGGCA
TTGATATATTAGGCACCGGGTTGTAAAGTTCGTTCAGTCCTAAAAGTTTT
TCCAGTTCCATTGCACCACAAGCGTTGGGCAGATCCTGTTTATTTGCTAG
TATCAGAACGGGAACACCCTGGTTATCAGGACATTTAGCGGTACGCATTA
ATTCCATCTTAGCTTCTTCCATTCTTTCTGTATCAACAGAATCAATAACA
AACAAAATGCCATCAGTGCAACGTGTATAACTTCTCCAAAGTGGTCTCAA
TTTTTCTTGTCCTCCGACATCCCAAACCAAAAAATGAACTCCTTTTGCTT
TGCCAAGGGTACATTGTACCTTTTCACAATTAAATCCAATAGTTGGCACT
GTGTTTAAGTATTGAATCAAACTTAAGTCTGTATAAAGCCCGTTGTTTTT
CCCCGCAA
BS14673.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2219-PA | 939 | CG2219-RA | 141..939 | 815..17 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RB | 1095 | CG2219-RB | 168..1002 | 853..17 | 4135 | 99.8 | Minus |
Arl4-RA | 1002 | CG2219-RA | 165..999 | 853..17 | 4135 | 99.8 | Minus |
Arl4-RC | 958 | CG2219-RC | 338..955 | 633..17 | 3065 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177441..177994 | 17..570 | 2770 | 100 | Plus |
4 | 1348131 | 4 | 178777..178881 | 568..672 | 525 | 100 | Plus |
4 | 1348131 | 4 | 178937..179036 | 672..771 | 500 | 100 | Plus |
4 | 1348131 | 4 | 179089..179173 | 767..853 | 335 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:00 has no hits.
BS14673.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:08 Download gff for
BS14673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 103..939 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:07 Download gff for
BS14673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 163..1002 | 14..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:33 Download gff for
BS14673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 163..1002 | 14..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:33 Download gff for
BS14673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 179092..179175 | 770..856 | 96 | | Plus |
4 | 177441..177992 | 17..568 | 100 | <- | Plus |
4 | 178778..178880 | 569..671 | 100 | <- | Plus |
4 | 178937..179034 | 672..769 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:07 Download gff for
BS14673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 198067..198618 | 17..568 | 100 | <- | Plus |
arm_4 | 199404..199506 | 569..671 | 100 | <- | Plus |
arm_4 | 199563..199660 | 672..769 | 100 | <- | Plus |
arm_4 | 199718..199801 | 770..856 | 96 | | Plus |
BS14673.5prime Sequence
794 bp (748 high quality bases) assembled on 2006-10-13
> BS14673.5prime
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAA
BS14673.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2219-PA | 939 | CG2219-RA | 1..778 | 17..794 | 3890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 1002 | CG2219-RA | 61..838 | 17..794 | 3890 | 100 | Plus |
Arl4-RB | 1095 | CG2219-RB | 61..841 | 17..794 | 3850 | 99.6 | Plus |
Arl4-RC | 958 | CG2219-RC | 338..794 | 339..794 | 2260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177602..177994 | 794..402 | 1965 | 100 | Minus |
4 | 1348131 | 4 | 179089..179213 | 205..81 | 625 | 100 | Minus |
4 | 1348131 | 4 | 178777..178881 | 404..300 | 525 | 100 | Minus |
4 | 1348131 | 4 | 178937..179036 | 300..201 | 500 | 100 | Minus |
4 | 1348131 | 4 | 179263..179329 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:20 has no hits.
BS14673.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:08 Download gff for
BS14673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:49 Download gff for
BS14673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 59..834 | 14..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:37 Download gff for
BS14673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 59..834 | 14..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:37 Download gff for
BS14673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 177606..177992 | 404..790 | 100 | <- | Minus |
4 | 178778..178880 | 301..403 | 100 | <- | Minus |
4 | 178937..179034 | 203..300 | 100 | <- | Minus |
4 | 179092..179211 | 83..202 | 100 | <- | Minus |
4 | 179264..179331 | 14..82 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:49 Download gff for
BS14673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 198232..198618 | 404..790 | 100 | <- | Minus |
arm_4 | 199404..199506 | 301..403 | 100 | <- | Minus |
arm_4 | 199563..199660 | 203..300 | 100 | <- | Minus |
arm_4 | 199718..199837 | 83..202 | 100 | <- | Minus |
arm_4 | 199890..199957 | 14..82 | 98 | | Minus |
BS14673.complete Sequence
971 bp assembled on 2006-11-01
GenBank Submission: FJ637752
> BS14673.complete
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGGTATATACAGCCA
ACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAGGTTTGGACGCTCTGTA
TGATATGATTTTAAAACGCCGAAAAATTAATAAGTCAAATAAAAGAAATC
TGTAGAAGCTTTCTAGACCAT
BS14673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 939 | CG2219-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Arl4-RB | 942 | CG2219-PB | 1..942 | 17..955 | 4630 | 99.7 | Plus |
Arl4-RC | 303 | CG2219-PC | 1..284 | 17..300 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 1002 | CG2219-RA | 61..999 | 17..955 | 4695 | 100 | Plus |
Arl4-RB | 1095 | CG2219-RB | 61..1002 | 17..955 | 4630 | 99.7 | Plus |
Arl4-RC | 958 | CG2219-RC | 344..955 | 344..955 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177441..177994 | 955..402 | 2770 | 100 | Minus |
4 | 1348131 | 4 | 179089..179213 | 205..81 | 625 | 100 | Minus |
4 | 1348131 | 4 | 178777..178881 | 404..300 | 525 | 100 | Minus |
4 | 1348131 | 4 | 178937..179036 | 300..201 | 500 | 100 | Minus |
4 | 1348131 | 4 | 179263..179329 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:34:30 has no hits.
BS14673.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:49 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:38 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 24..964 | 14..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:32 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 61..999 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:50 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 24..964 | 14..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:58 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 61..999 | 17..955 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:58 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 177441..177992 | 404..955 | 100 | <- | Minus |
4 | 178778..178880 | 301..403 | 100 | <- | Minus |
4 | 178937..179034 | 203..300 | 100 | <- | Minus |
4 | 179092..179211 | 83..202 | 100 | <- | Minus |
4 | 179264..179329 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:32 Download gff for
BS14673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 198067..198618 | 404..955 | 100 | <- | Minus |
arm_4 | 199404..199506 | 301..403 | 100 | <- | Minus |
arm_4 | 199563..199660 | 203..300 | 100 | <- | Minus |
arm_4 | 199718..199837 | 83..202 | 100 | <- | Minus |
arm_4 | 199890..199955 | 17..82 | 100 | | Minus |
BS14673.pep Sequence
Translation from 16 to 954
> BS14673.pep
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNL*
BS14673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-PA | 312 | CG2219-PA | 1..312 | 1..312 | 1629 | 100 | Plus |
Arl4-PB | 313 | CG2219-PB | 1..313 | 1..312 | 1617 | 99.7 | Plus |
Arl4-PC | 100 | CG2219-PC | 1..95 | 1..95 | 502 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 7..150 | 14..162 | 362 | 49 | Plus |
Arf79F-PI | 182 | CG8385-PI | 7..150 | 14..162 | 362 | 49 | Plus |