Clone BS14673 Report

Search the DGRC for BS14673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptArl4-RA
Protein status:BS14673.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14673.3prime Sequence

858 bp (731 high quality bases) assembled on 2006-10-13

> BS14673.3prime
ATGGTCTAGAAAGCTTCTACAGATTTCTTTTATTTGACTTATTAATTTTT
CGGCGTTTTAAAATCATATCATACAGAGCGTCCAAACCTTCTTGGAGACC
CTCACCAGTTATAGCACAGGTTGGCTGTATATACCACCCCCTAAATTGCA
CAGAATTTGATGAAGACCTGTTCATCTTTTTGTTATGAAAACCATTTTTA
ACATCTTGTGGGTTTTTTTGATCCAGTACAGCAGAATTGTTGTGAGATTG
CGGATATATAAAAGCTGTCAAGGCTCCTCCGCTTAACGTGGAATTGTGGT
CTTTACTTTCAAGTGCAGGTTTTATGTGAATCATAGACGAATGCAGATGA
CTCTCTTTTTTCTCTTCTAAAGATTTATCTGTAATACTTTGGTTTGAAAC
TCTACAGCCAATTAAATTAATTGTGGGAGAAGAGTCGGAACTAGAGGGCA
TTGATATATTAGGCACCGGGTTGTAAAGTTCGTTCAGTCCTAAAAGTTTT
TCCAGTTCCATTGCACCACAAGCGTTGGGCAGATCCTGTTTATTTGCTAG
TATCAGAACGGGAACACCCTGGTTATCAGGACATTTAGCGGTACGCATTA
ATTCCATCTTAGCTTCTTCCATTCTTTCTGTATCAACAGAATCAATAACA
AACAAAATGCCATCAGTGCAACGTGTATAACTTCTCCAAAGTGGTCTCAA
TTTTTCTTGTCCTCCGACATCCCAAACCAAAAAATGAACTCCTTTTGCTT
TGCCAAGGGTACATTGTACCTTTTCACAATTAAATCCAATAGTTGGCACT
GTGTTTAAGTATTGAATCAAACTTAAGTCTGTATAAAGCCCGTTGTTTTT
CCCCGCAA

BS14673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2219-PA 939 CG2219-RA 141..939 815..17 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RB 1095 CG2219-RB 168..1002 853..17 4135 99.8 Minus
Arl4-RA 1002 CG2219-RA 165..999 853..17 4135 99.8 Minus
Arl4-RC 958 CG2219-RC 338..955 633..17 3065 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177441..177994 17..570 2770 100 Plus
4 1348131 4 178777..178881 568..672 525 100 Plus
4 1348131 4 178937..179036 672..771 500 100 Plus
4 1348131 4 179089..179173 767..853 335 97.7 Plus
Blast to na_te.dros performed on 2015-02-12 03:59:00 has no hits.

BS14673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:08 Download gff for BS14673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 103..939 17..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:07 Download gff for BS14673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 163..1002 14..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:33 Download gff for BS14673.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 163..1002 14..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:33 Download gff for BS14673.3prime
Subject Subject Range Query Range Percent Splice Strand
4 179092..179175 770..856 96   Plus
4 177441..177992 17..568 100 <- Plus
4 178778..178880 569..671 100 <- Plus
4 178937..179034 672..769 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:07 Download gff for BS14673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 198067..198618 17..568 100 <- Plus
arm_4 199404..199506 569..671 100 <- Plus
arm_4 199563..199660 672..769 100 <- Plus
arm_4 199718..199801 770..856 96   Plus

BS14673.5prime Sequence

794 bp (748 high quality bases) assembled on 2006-10-13

> BS14673.5prime
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAA

BS14673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2219-PA 939 CG2219-RA 1..778 17..794 3890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 1002 CG2219-RA 61..838 17..794 3890 100 Plus
Arl4-RB 1095 CG2219-RB 61..841 17..794 3850 99.6 Plus
Arl4-RC 958 CG2219-RC 338..794 339..794 2260 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177602..177994 794..402 1965 100 Minus
4 1348131 4 179089..179213 205..81 625 100 Minus
4 1348131 4 178777..178881 404..300 525 100 Minus
4 1348131 4 178937..179036 300..201 500 100 Minus
4 1348131 4 179263..179329 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:51:20 has no hits.

BS14673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:08 Download gff for BS14673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:49 Download gff for BS14673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 59..834 14..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:37 Download gff for BS14673.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 59..834 14..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:37 Download gff for BS14673.5prime
Subject Subject Range Query Range Percent Splice Strand
4 177606..177992 404..790 100 <- Minus
4 178778..178880 301..403 100 <- Minus
4 178937..179034 203..300 100 <- Minus
4 179092..179211 83..202 100 <- Minus
4 179264..179331 14..82 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:49 Download gff for BS14673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 198232..198618 404..790 100 <- Minus
arm_4 199404..199506 301..403 100 <- Minus
arm_4 199563..199660 203..300 100 <- Minus
arm_4 199718..199837 83..202 100 <- Minus
arm_4 199890..199957 14..82 98   Minus

BS14673.complete Sequence

971 bp assembled on 2006-11-01

GenBank Submission: FJ637752

> BS14673.complete
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGGTATATACAGCCA
ACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAGGTTTGGACGCTCTGTA
TGATATGATTTTAAAACGCCGAAAAATTAATAAGTCAAATAAAAGAAATC
TGTAGAAGCTTTCTAGACCAT

BS14673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 939 CG2219-PA 1..939 17..955 4695 100 Plus
Arl4-RB 942 CG2219-PB 1..942 17..955 4630 99.7 Plus
Arl4-RC 303 CG2219-PC 1..284 17..300 1420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 1002 CG2219-RA 61..999 17..955 4695 100 Plus
Arl4-RB 1095 CG2219-RB 61..1002 17..955 4630 99.7 Plus
Arl4-RC 958 CG2219-RC 344..955 344..955 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177441..177994 955..402 2770 100 Minus
4 1348131 4 179089..179213 205..81 625 100 Minus
4 1348131 4 178777..178881 404..300 525 100 Minus
4 1348131 4 178937..179036 300..201 500 100 Minus
4 1348131 4 179263..179329 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:34:30 has no hits.

BS14673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:49 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 17..955 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:38 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 24..964 14..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:32 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 61..999 17..955 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:50 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 24..964 14..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:58 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 61..999 17..955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:58 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
4 177441..177992 404..955 100 <- Minus
4 178778..178880 301..403 100 <- Minus
4 178937..179034 203..300 100 <- Minus
4 179092..179211 83..202 100 <- Minus
4 179264..179329 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:32 Download gff for BS14673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 198067..198618 404..955 100 <- Minus
arm_4 199404..199506 301..403 100 <- Minus
arm_4 199563..199660 203..300 100 <- Minus
arm_4 199718..199837 83..202 100 <- Minus
arm_4 199890..199955 17..82 100   Minus

BS14673.pep Sequence

Translation from 16 to 954

> BS14673.pep
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNL*

BS14673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-PA 312 CG2219-PA 1..312 1..312 1629 100 Plus
Arl4-PB 313 CG2219-PB 1..313 1..312 1617 99.7 Plus
Arl4-PC 100 CG2219-PC 1..95 1..95 502 100 Plus
Arf79F-PJ 182 CG8385-PJ 7..150 14..162 362 49 Plus
Arf79F-PI 182 CG8385-PI 7..150 14..162 362 49 Plus