Clone Sequence Records
BS14674.3prime Sequence
818 bp (756 high quality bases) assembled on 2006-10-13
> BS14674.3prime
ATGGTCTAGAAAGCTTCTATGGATTTTCCGGTTTATGCTGTTGTTGCTGC
AACAGCTGTCGCTGCTGCTGCAACAGCTGCATTTGCAGTTGCAGTTGCTG
AACATGATGTGGCTTCAAGTGCAGTTGCTGCAGCAACTGTTGTTGCTCCT
GCTCCTGCTGTTGTTGCAACTCCTGCTGTTGTTGTAACTCCTGCTGTTGT
TGCTGCTGCTGCGGTTGTTGCTGCAACATTAGCTTTTGCTTCTCTTGGTA
CTGTTTCTGCTGAGTCTGTATCTGTTGCCTCTGCTTCTCGAACTCCTCCA
GTTGCTCCTGCTGTTTGAGCACCAGCTCGTCCATGTTGAGCTCTAGATGC
TTGCGTGTTTCCTCGGCGGCGCGGCTAGGCGTAATATTCCACTCTTGCAT
TTGTTGCGGCAGAATCTGAAATAGGCGTTCGATGGCTAGATTAGAGCCAC
ACTCATCGCTGCAGTACTTGCTCTGCGGCCTCGCATGGGAGCAGCAATTG
GGTCCGTGGCACTGCTGGATGCCCTGTAGCTCCGGATTGAGGAATATCTC
CGGACTGACCGCCCGCGGGCTCACCTGGACATTGGAAGTCTTGGGTGCCG
CCTTATCCCGCTTCGTACCTGCTTGAGTCGGCTGCGACTCCTTTGGTTCT
TGGGCGCTGCTGTTTTTGCGCTTCGCTGCCGCAGTGGTCGGTGGCGGCGC
TTGCTGGCTGGTTGTTGCGGGCGCCACCGGTGCAGCAGCAGGCGCAGCTC
CCGATGGACCTACGCCCGGAGCATTGAGACTTGTAGAGGCGGCGTTCGAT
GCGGCTGCACGTTCGGTG
BS14674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-PA | 1101 | CG17440-RA | 300..1101 | 818..17 | 3985 | 99.8 | Minus |
| CG17446-PA | 1992 | CG17446-RA | 366..543 | 818..641 | 790 | 97.7 | Minus |
| CG17446-PA | 1992 | CG17446-RA | 744..883 | 584..445 | 500 | 94.2 | Minus |
| CG17446-PA | 1992 | CG17446-RA | 914..983 | 414..345 | 225 | 92.8 | Minus |
| CG17446-PA | 1992 | CG17446-RA | 1698..1782 | 278..191 | 195 | 88.6 | Minus |
| CG17446-PA | 1992 | CG17446-RA | 1624..1681 | 334..277 | 190 | 93.1 | Minus |
| CG2904-PA | 5139 | ec-RA | 4316..4350 | 225..191 | 150 | 97.1 | Minus |
| CG2904-PA | 5139 | ec-RA | 4350..4383 | 224..191 | 145 | 97 | Minus |
| CG33106-PA | 12006 | mask-RA | 3567..3600 | 224..191 | 145 | 97 | Minus |
| CG33106-PB | 12006 | mask-RB | 3567..3600 | 224..191 | 145 | 97 | Minus |
| CG7847-PA | 3561 | sr-RA | 564..590 | 224..198 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1300 | CG17440-RA | 431..1233 | 818..16 | 4000 | 99.9 | Minus |
| Cfp1-RB | 2344 | CG17446-RB | 689..994 | 644..345 | 965 | 87.9 | Minus |
| Cfp1-RA | 2404 | CG17446-RA | 749..1054 | 644..345 | 965 | 87.9 | Minus |
| Cfp1-RB | 2344 | CG17446-RB | 377..554 | 818..641 | 830 | 97.8 | Minus |
| Cfp1-RB | 2344 | CG17446-RB | 1635..1858 | 334..120 | 370 | 78.1 | Minus |
| Cfp1-RB | 2344 | CG17446-RB | 1790..1944 | 224..61 | 310 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9268505..9268908 | 16..419 | 2020 | 100 | Plus |
| X | 23542271 | X | 9268971..9269373 | 416..818 | 2000 | 99.8 | Plus |
| X | 23542271 | X | 9272285..9272462 | 641..818 | 830 | 97.8 | Plus |
| X | 23542271 | X | 9271933..9272118 | 433..618 | 690 | 91.4 | Plus |
| X | 23542271 | X | 9270967..9271143 | 173..334 | 305 | 80.6 | Plus |
| X | 23542271 | X | 9271784..9271858 | 345..419 | 285 | 92 | Plus |
| X | 23542271 | X | 9270850..9270988 | 83..224 | 270 | 81 | Plus |
Blast to na_te.dros performed 2015-01-31 10:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2986 | 351..156 | 258 | 63.1 | Minus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1711..1764 | 247..194 | 108 | 66.7 | Minus |
BS14674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:09 Download gff for
BS14674.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-PA | 300..1101 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:00 Download gff for
BS14674.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 431..1239 | 7..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:09 Download gff for
BS14674.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 431..1239 | 7..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:09 Download gff for
BS14674.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9268499..9268904 | 7..415 | 99 | <- | Plus |
| X | 9268971..9269373 | 416..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:00 Download gff for
BS14674.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9162532..9162937 | 7..415 | 99 | <- | Plus |
| arm_X | 9163004..9163406 | 416..818 | 99 | | Plus |
BS14674.5prime Sequence
847 bp (794 high quality bases) assembled on 2006-10-13
> BS14674.5prime
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAAGAGCAACTGGAGGAGTTCGAG
BS14674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-PA | 1101 | CG17440-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
| CG17446-PA | 1992 | CG17446-RA | 183..543 | 133..493 | 1480 | 96.3 | Plus |
| CG17446-PA | 1992 | CG17446-RA | 744..883 | 550..689 | 500 | 94.2 | Plus |
| CG17446-PA | 1992 | CG17446-RA | 97..178 | 47..128 | 360 | 97.5 | Plus |
| CG17446-PA | 1992 | CG17446-RA | 914..983 | 720..789 | 225 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1300 | CG17440-RA | 128..962 | 13..847 | 4145 | 99.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 91..554 | 30..493 | 2020 | 95.7 | Plus |
| Cfp1-RA | 2404 | CG17446-RA | 163..614 | 42..493 | 1975 | 95.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 689..994 | 490..789 | 965 | 87.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9268971..9269514 | 718..175 | 2720 | 100 | Minus |
| X | 23542271 | X | 9272285..9272603 | 493..175 | 1400 | 95.9 | Minus |
| X | 23542271 | X | 9271933..9272118 | 701..516 | 690 | 91.4 | Minus |
| X | 23542271 | X | 9269577..9269710 | 174..41 | 670 | 100 | Minus |
| X | 23542271 | X | 9268776..9268908 | 847..715 | 650 | 99.2 | Minus |
| X | 23542271 | X | 9272666..9272798 | 174..42 | 575 | 95.5 | Minus |
| X | 23542271 | X | 9271784..9271858 | 789..715 | 285 | 92 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:32 has no hits.
BS14674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:09 Download gff for
BS14674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:55 Download gff for
BS14674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 121..962 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:41 Download gff for
BS14674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 121..962 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:41 Download gff for
BS14674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9268776..9268904 | 719..847 | 99 | <- | Minus |
| X | 9268971..9269514 | 175..718 | 100 | <- | Minus |
| X | 9269577..9269710 | 41..174 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:55 Download gff for
BS14674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9162809..9162937 | 719..847 | 99 | <- | Minus |
| arm_X | 9163004..9163547 | 175..718 | 100 | <- | Minus |
| arm_X | 9163610..9163743 | 41..174 | 100 | <- | Minus |
BS14674.complete Sequence
1133 bp assembled on 2006-11-01
GenBank Submission: FJ637753
> BS14674.complete
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTGGAGGAGTTCGAGAAG
CAGAGGCAACAGATACAGACTCAGCAGAAACAGTACCAAGAGAAGCAAAA
GCTAATGTTGCAGCAACAACCGCAGCAGCAGCAACAACAGCAGGAGTTAC
AACAACAGCAGGAGTTGCAACAACAGCAGGAGCAGGAGCAACAACAGTTG
CTGCAGCAACTGCACTTGAAGCCACATCATGTTCAGCAACTGCAACTGCA
AATGCAGCTGTTGCAGCAGCAGCGACAGCTGTTGCAGCAACAACAGCATA
AACCGGAAAATCCATAGAAGCTTTCTAGACCAT
BS14674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1101 | CG17440-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| Cfp1-RB | 1932 | CG17446-PB | 20..483 | 30..493 | 2020 | 95.7 | Plus |
| Cfp1-RA | 1992 | CG17446-PA | 92..543 | 42..493 | 1975 | 95.8 | Plus |
| Cfp1-RB | 1932 | CG17446-PB | 650..923 | 516..789 | 950 | 89.8 | Plus |
| Cfp1-RB | 1932 | CG17446-PB | 1564..1740 | 800..961 | 305 | 80.6 | Plus |
| Cfp1-RB | 1932 | CG17446-PB | 1719..1857 | 910..1051 | 270 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-RA | 1300 | CG17440-RA | 128..1233 | 13..1118 | 5515 | 99.9 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 91..554 | 30..493 | 2020 | 95.7 | Plus |
| Cfp1-RA | 2404 | CG17446-RA | 163..614 | 42..493 | 1975 | 95.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 721..994 | 516..789 | 950 | 89.8 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 1635..1811 | 800..961 | 305 | 80.6 | Plus |
| Cfp1-RB | 2344 | CG17446-RB | 1790..1928 | 910..1051 | 270 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9268971..9269514 | 718..175 | 2720 | 100 | Minus |
| X | 23542271 | X | 9268505..9268908 | 1118..715 | 2020 | 100 | Minus |
| X | 23542271 | X | 9272285..9272603 | 493..175 | 1400 | 95.9 | Minus |
| X | 23542271 | X | 9271933..9272118 | 701..516 | 690 | 91.4 | Minus |
| X | 23542271 | X | 9269577..9269710 | 174..41 | 670 | 100 | Minus |
| X | 23542271 | X | 9272666..9272798 | 174..42 | 575 | 95.5 | Minus |
| X | 23542271 | X | 9270967..9271143 | 961..800 | 305 | 80.6 | Minus |
| X | 23542271 | X | 9271784..9271858 | 789..715 | 285 | 92 | Minus |
| X | 23542271 | X | 9270850..9270988 | 1051..910 | 270 | 81 | Minus |
Blast to na_te.dros performed 2014-11-26 16:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2986 | 783..978 | 258 | 63.1 | Plus |
BS14674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:41 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:35 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 108..1226 | 7..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:38 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 132..1232 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:41 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 108..1226 | 7..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:07 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17440-RA | 132..1232 | 17..1117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:07 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9268506..9268904 | 719..1117 | 100 | <- | Minus |
| X | 9268971..9269514 | 175..718 | 100 | <- | Minus |
| X | 9269577..9269710 | 41..174 | 100 | <- | Minus |
| X | 9269771..9269794 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:38 Download gff for
BS14674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9162539..9162937 | 719..1117 | 100 | <- | Minus |
| arm_X | 9163004..9163547 | 175..718 | 100 | <- | Minus |
| arm_X | 9163610..9163743 | 41..174 | 100 | <- | Minus |
| arm_X | 9163804..9163827 | 17..40 | 100 | | Minus |
BS14674.pep Sequence
Translation from 16 to 1116
> BS14674.pep
MTDNDKKTEEEIRREIAREFDLPERKSKIATILKQKDREYCICRSSDCSR
FMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRCKKENPELQTIFRLVA
TERAAASNAASTSLNAPGVGPSGAAPAAAPVAPATTSQQAPPPTTAAAKR
KNSSAQEPKESQPTQAGTKRDKAAPKTSNVQVSPRAVSPEIFLNPELQGI
QQCHGPNCCSHARPQSKYCSDECGSNLAIERLFQILPQQMQEWNITPSRA
AEETRKHLELNMDELVLKQQEQLEEFEKQRQQIQTQQKQYQEKQKLMLQQ
QPQQQQQQQELQQQQELQQQQEQEQQQLLQQLHLKPHHVQQLQLQMQLLQ
QQRQLLQQQQHKPENP*
BS14674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17440-PA | 366 | CG17440-PA | 1..366 | 1..366 | 1918 | 100 | Plus |
| Cfp1-PB | 643 | CG17446-PB | 1..332 | 1..283 | 1155 | 70 | Plus |
| Cfp1-PA | 663 | CG17446-PA | 24..352 | 2..283 | 1144 | 69.4 | Plus |
| Cfp1-PB | 643 | CG17446-PB | 422..631 | 185..366 | 334 | 42.5 | Plus |
| Cfp1-PA | 663 | CG17446-PA | 442..651 | 185..366 | 334 | 42.5 | Plus |
| CG44085-PM | 864 | CG44085-PM | 146..393 | 105..363 | 230 | 31.7 | Plus |
| CG44085-PO | 2381 | CG44085-PO | 146..393 | 105..363 | 230 | 31.7 | Plus |
| CG44085-PM | 864 | CG44085-PM | 206..430 | 121..362 | 207 | 32.5 | Plus |
