Clone BS14675 Report

Search the DGRC for BS14675

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG17030-RA
Protein status:BS14675.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14675.3prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14675.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCGTCATCGCTTTCTTTCGCTTGCGC
GCAAACTTTGCTAGCTCCTCTTCAGTGGGCCGGGGTTCACTGTACTTCTG
CACCCAGGCATCGGCCATTTTGAAGAATCGCACCGGATCATTGCGATACT
CGCCGGCCATTTCGATGTGCCAGGCGTTCTCCGGCTGTGGATCATTTATG
GTGGCCAGCAGTACCTGCAGCACCTGGTCAATCCGCGTGGTTGGGATCCA
GTGCTCGACCTCCAAAATAGGCACACACACCTGACCACGCTCATTGACAT
TCAGGTGGTACATCCTCGTGTTTATATGGATGCGAGGCGGCTTGAATGGG
TAATCCAGTGGAAAGTCGATCTCCATTTTGTAGGCACCCTTGTCATAAGG
CGGTGCCACCGGCATCAGCAGGCCTGTCCACTTGTAGATGTTGTTCGGCT
CCACCAAGAGGTTTCGGAACTGCAAATTCTGTTTATCCTCCAACATCAGG
GCCAATTCGCGGTTCATCCGCTTGGGTCCGTCCATAAGAGGCTCCTCCTT
TTTGGCCATGTCGACTGATAACT

BS14675.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-PA 543 CG17030-RA 1..543 559..17 2665 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-RA 767 CG17030-RA 132..676 560..16 2695 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4980094..4980638 16..560 2695 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:41:37 has no hits.

BS14675.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:09 Download gff for BS14675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-PA 1..543 17..559 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:31 Download gff for BS14675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for BS14675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for BS14675.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4980094..4980638 16..560 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:31 Download gff for BS14675.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4980094..4980638 16..560 99   Plus

BS14675.5prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14675.5prime
GAAGTTATCAGTCGACATGGCCAAAAAGGAGGAGCCTCTTATGGACGGAC
CCAAGCGGATGAACCGCGAATTGGCCCTGATGTTGGAGGATAAACAGAAT
TTGCAGTTCCGAAACCTCTTGGTGGAGCCGAACAACATCTACAAGTGGAC
AGGCCTGCTGATGCCGGTGGCACCGCCTTATGACAAGGGTGCCTACAAAA
TGGAGATCGACTTTCCACTGGATTACCCATTCAAGCCGCCTCGCATCCAT
ATAAACACGAGGATGTACCACCTGAATGTCAATGAGCGTGGTCAGGTGTG
TGTGCCTATTTTGGAGGTCGAGCACTGGATCCCAACCACGCGGATTGACC
AGGTGCTGCAGGTACTGCTGGCCACCATAAATGATCCACAGCCGGAGAAC
GCCTGGCACATCGAAATGGCCGGCGAGTATCGCAATGATCCGGTGCGATT
CTTCAAAATGGCCGATGCCTGGGTGCAGAAGTACAGTGAACCCCGGCCCA
CTGAAGAGGAGCTAGCAAAGTTTGCGCGCAAGCGAAAGAAAGCGATGACG
AAGAAGTAGAAGCTTTCTAGACC

BS14675.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-PA 543 CG17030-RA 1..543 17..559 2665 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-RA 767 CG17030-RA 132..676 16..560 2695 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4980094..4980638 560..16 2695 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 03:59:24 has no hits.

BS14675.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:10 Download gff for BS14675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-PA 1..543 17..559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:14 Download gff for BS14675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:21 Download gff for BS14675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:21 Download gff for BS14675.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4980094..4980638 16..560 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:14 Download gff for BS14675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4980094..4980638 16..560 99   Minus

BS14675.complete Sequence

575 bp assembled on 2006-11-01

GenBank Submission: FJ637754

> BS14675.complete
GAAGTTATCAGTCGACATGGCCAAAAAGGAGGAGCCTCTTATGGACGGAC
CCAAGCGGATGAACCGCGAATTGGCCCTGATGTTGGAGGATAAACAGAAT
TTGCAGTTCCGAAACCTCTTGGTGGAGCCGAACAACATCTACAAGTGGAC
AGGCCTGCTGATGCCGGTGGCACCGCCTTATGACAAGGGTGCCTACAAAA
TGGAGATCGACTTTCCACTGGATTACCCATTCAAGCCGCCTCGCATCCAT
ATAAACACGAGGATGTACCACCTGAATGTCAATGAGCGTGGTCAGGTGTG
TGTGCCTATTTTGGAGGTCGAGCACTGGATCCCAACCACGCGGATTGACC
AGGTGCTGCAGGTACTGCTGGCCACCATAAATGATCCACAGCCGGAGAAC
GCCTGGCACATCGAAATGGCCGGCGAGTATCGCAATGATCCGGTGCGATT
CTTCAAAATGGCCGATGCCTGGGTGCAGAAGTACAGTGAACCCCGGCCCA
CTGAAGAGGAGCTAGCAAAGTTTGCGCGCAAGCGAAAGAAAGCGATGACG
AAGAAGTAGAAGCTTTCTAGACCAT

BS14675.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-RA 543 CG17030-PA 1..543 17..559 2685 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-RA 767 CG17030-RA 132..676 16..560 2695 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4980094..4980638 560..16 2695 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 20:19:46 has no hits.

BS14675.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:33 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 1..543 17..559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:21 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:44 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 133..675 17..559 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:33 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 132..676 16..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:25 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
CG17030-RA 133..675 17..559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:25 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4980095..4980637 17..559 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:44 Download gff for BS14675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4980095..4980637 17..559 99   Minus

BS14675.pep Sequence

Translation from 16 to 558

> BS14675.pep
MAKKEEPLMDGPKRMNRELALMLEDKQNLQFRNLLVEPNNIYKWTGLLMP
VAPPYDKGAYKMEIDFPLDYPFKPPRIHINTRMYHLNVNERGQVCVPILE
VEHWIPTTRIDQVLQVLLATINDPQPENAWHIEMAGEYRNDPVRFFKMAD
AWVQKYSEPRPTEEELAKFARKRKKAMTKK*

BS14675.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17030-PA 180 CG17030-PA 1..180 1..180 971 100 Plus
Ubc10-PA 154 CG5788-PA 1..154 9..163 411 45.8 Plus
Ubc84D-PA 153 CG12799-PA 1..152 9..161 358 41.8 Plus
eff-PC 147 CG7425-PC 28..146 39..157 230 35 Plus
eff-PB 147 CG7425-PB 28..146 39..157 230 35 Plus