Clone Sequence Records
BS14675.3prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14675.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCGTCATCGCTTTCTTTCGCTTGCGC
GCAAACTTTGCTAGCTCCTCTTCAGTGGGCCGGGGTTCACTGTACTTCTG
CACCCAGGCATCGGCCATTTTGAAGAATCGCACCGGATCATTGCGATACT
CGCCGGCCATTTCGATGTGCCAGGCGTTCTCCGGCTGTGGATCATTTATG
GTGGCCAGCAGTACCTGCAGCACCTGGTCAATCCGCGTGGTTGGGATCCA
GTGCTCGACCTCCAAAATAGGCACACACACCTGACCACGCTCATTGACAT
TCAGGTGGTACATCCTCGTGTTTATATGGATGCGAGGCGGCTTGAATGGG
TAATCCAGTGGAAAGTCGATCTCCATTTTGTAGGCACCCTTGTCATAAGG
CGGTGCCACCGGCATCAGCAGGCCTGTCCACTTGTAGATGTTGTTCGGCT
CCACCAAGAGGTTTCGGAACTGCAAATTCTGTTTATCCTCCAACATCAGG
GCCAATTCGCGGTTCATCCGCTTGGGTCCGTCCATAAGAGGCTCCTCCTT
TTTGGCCATGTCGACTGATAACT
BS14675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-PA | 543 | CG17030-RA | 1..543 | 559..17 | 2665 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-RA | 767 | CG17030-RA | 132..676 | 560..16 | 2695 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4980094..4980638 | 16..560 | 2695 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:41:37 has no hits.
BS14675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:09 Download gff for
BS14675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-PA | 1..543 | 17..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:31 Download gff for
BS14675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for
BS14675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for
BS14675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4980094..4980638 | 16..560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:31 Download gff for
BS14675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4980094..4980638 | 16..560 | 99 | | Plus |
BS14675.5prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14675.5prime
GAAGTTATCAGTCGACATGGCCAAAAAGGAGGAGCCTCTTATGGACGGAC
CCAAGCGGATGAACCGCGAATTGGCCCTGATGTTGGAGGATAAACAGAAT
TTGCAGTTCCGAAACCTCTTGGTGGAGCCGAACAACATCTACAAGTGGAC
AGGCCTGCTGATGCCGGTGGCACCGCCTTATGACAAGGGTGCCTACAAAA
TGGAGATCGACTTTCCACTGGATTACCCATTCAAGCCGCCTCGCATCCAT
ATAAACACGAGGATGTACCACCTGAATGTCAATGAGCGTGGTCAGGTGTG
TGTGCCTATTTTGGAGGTCGAGCACTGGATCCCAACCACGCGGATTGACC
AGGTGCTGCAGGTACTGCTGGCCACCATAAATGATCCACAGCCGGAGAAC
GCCTGGCACATCGAAATGGCCGGCGAGTATCGCAATGATCCGGTGCGATT
CTTCAAAATGGCCGATGCCTGGGTGCAGAAGTACAGTGAACCCCGGCCCA
CTGAAGAGGAGCTAGCAAAGTTTGCGCGCAAGCGAAAGAAAGCGATGACG
AAGAAGTAGAAGCTTTCTAGACC
BS14675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-PA | 543 | CG17030-RA | 1..543 | 17..559 | 2665 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-RA | 767 | CG17030-RA | 132..676 | 16..560 | 2695 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4980094..4980638 | 560..16 | 2695 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:59:24 has no hits.
BS14675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:10 Download gff for
BS14675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-PA | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:14 Download gff for
BS14675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:21 Download gff for
BS14675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:21 Download gff for
BS14675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4980094..4980638 | 16..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:14 Download gff for
BS14675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4980094..4980638 | 16..560 | 99 | | Minus |
BS14675.complete Sequence
575 bp assembled on 2006-11-01
GenBank Submission: FJ637754
> BS14675.complete
GAAGTTATCAGTCGACATGGCCAAAAAGGAGGAGCCTCTTATGGACGGAC
CCAAGCGGATGAACCGCGAATTGGCCCTGATGTTGGAGGATAAACAGAAT
TTGCAGTTCCGAAACCTCTTGGTGGAGCCGAACAACATCTACAAGTGGAC
AGGCCTGCTGATGCCGGTGGCACCGCCTTATGACAAGGGTGCCTACAAAA
TGGAGATCGACTTTCCACTGGATTACCCATTCAAGCCGCCTCGCATCCAT
ATAAACACGAGGATGTACCACCTGAATGTCAATGAGCGTGGTCAGGTGTG
TGTGCCTATTTTGGAGGTCGAGCACTGGATCCCAACCACGCGGATTGACC
AGGTGCTGCAGGTACTGCTGGCCACCATAAATGATCCACAGCCGGAGAAC
GCCTGGCACATCGAAATGGCCGGCGAGTATCGCAATGATCCGGTGCGATT
CTTCAAAATGGCCGATGCCTGGGTGCAGAAGTACAGTGAACCCCGGCCCA
CTGAAGAGGAGCTAGCAAAGTTTGCGCGCAAGCGAAAGAAAGCGATGACG
AAGAAGTAGAAGCTTTCTAGACCAT
BS14675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-RA | 543 | CG17030-PA | 1..543 | 17..559 | 2685 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-RA | 767 | CG17030-RA | 132..676 | 16..560 | 2695 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4980094..4980638 | 560..16 | 2695 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:46 has no hits.
BS14675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:33 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:21 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:44 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 133..675 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:33 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 132..676 | 16..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:25 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17030-RA | 133..675 | 17..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:25 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4980095..4980637 | 17..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:44 Download gff for
BS14675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4980095..4980637 | 17..559 | 99 | | Minus |
BS14675.pep Sequence
Translation from 16 to 558
> BS14675.pep
MAKKEEPLMDGPKRMNRELALMLEDKQNLQFRNLLVEPNNIYKWTGLLMP
VAPPYDKGAYKMEIDFPLDYPFKPPRIHINTRMYHLNVNERGQVCVPILE
VEHWIPTTRIDQVLQVLLATINDPQPENAWHIEMAGEYRNDPVRFFKMAD
AWVQKYSEPRPTEEELAKFARKRKKAMTKK*
BS14675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17030-PA | 180 | CG17030-PA | 1..180 | 1..180 | 971 | 100 | Plus |
Ubc10-PA | 154 | CG5788-PA | 1..154 | 9..163 | 411 | 45.8 | Plus |
Ubc84D-PA | 153 | CG12799-PA | 1..152 | 9..161 | 358 | 41.8 | Plus |
eff-PC | 147 | CG7425-PC | 28..146 | 39..157 | 230 | 35 | Plus |
eff-PB | 147 | CG7425-PB | 28..146 | 39..157 | 230 | 35 | Plus |