Clone Sequence Records
BS14677.3prime Sequence
827 bp (760 high quality bases) assembled on 2006-10-13
> BS14677.3prime
ATGGTCTAGAAAGCTTTCACGAAGTTTTCTCAGTTCCAGGCTTCAAAGAG
AATTCGATGTGTGAGTTCGTAGCTTCTTCATTTGTAATATTTGGGTTGGC
TGCATCTGGAACTTGTTGTTCCTTTTCTCCCGCATCGCTTGGCTTATGGA
CCAATTCAGCATTGCTTAAAGTTCTGAGCCGAGAATAGCTAGAGCCCTGT
TCTACCAGCAAAATCTCCGATTTCTCCCTTTTCTCAGTGTCCGCCCACAT
GGAAGATCGCCGGGCTAGCTTCCGATCCATTTGAATGGGTTTCATTGTGG
CCTCGCTGTTCTCACTTGACCGAGTTGAAACAAGGCTAACAGTGCTCCTG
TCCTCGATTTTGGCCCACAAGCTCGAGGAATCGCTGGAGCCGCGCCAGGC
TGAAGCAGACCTGCGCATCTTATTGGCCTGCTCTTCCATGTACACACTGT
ACTCCGTGTCCACCGGTGTGATATCCGATTCACTGGTGGTTATTGTTGGC
GTTGATAGAAAACTCTCGTCACTCTCGATCTGATGCAGCGAAAAGAACTT
TTTACGCGCATCCCCAATGAACTGCCACATGCGGACTATAAAGTGCGGCT
GCTCCACCTCCGCGTTCGGCCGGAAGTACAGGATCTGAGAATTGGCCAAC
TTATAGTAGCACCTGCAGCATTTGCATAGAAAGTCGTCCACTGGCTTGGA
AAGCACAAATAGCCCGGTTGAACCAGACTCTGTTCCCTCAAAGTACTTAC
GGCCAGTCGCCTGACGTTTCCAGTCGCCGGGTTCCATGCGCATCAGCAAG
TCGAACACGTGGAACATGTGCATCAGG
BS14677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 1197 | CG14000-RA | 387..1197 | 827..17 | 4030 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 432..1243 | 827..16 | 4045 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909047..5909858 | 16..827 | 4045 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:43:07 has no hits.
BS14677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:11 Download gff for
BS14677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 387..1197 | 17..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:39 Download gff for
BS14677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 432..1246 | 10..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:03 Download gff for
BS14677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 432..1246 | 10..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:03 Download gff for
BS14677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909044..5909858 | 10..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:39 Download gff for
BS14677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909044..5909858 | 10..827 | 99 | | Plus |
BS14677.5prime Sequence
804 bp (707 high quality bases) assembled on 2006-10-13
> BS14677.5prime
GAAGTTATCAGTCGACATGAACCAGGTTTGGGTGTTTTTTAAACTCATCG
AGGTGTTGCTGGGCAGTGTTTGTATGTTTTTCCACATACGCGGCTCATCC
TACTGGCCAGAGCGTACTCCTCATGTGATCCTATATTGTGCCACATTTTC
GTCCTTTACGGCGCTCGCCGCTCTAGGCGCGTTCCGACTGCTATTGGCTA
GGAGTACGGTGCTCTCCTCCCAGCTCCTGCTCACACTGAGTGCCGTGCTG
TCGCACTATTTCTGCGGCGTGCTGATAATGCGCACCGCCATGCTGGACCC
TCACCTGGCCTTCATCAATTCTACCATCGAGTATCTGGAACATCCGCACT
TTGCGCACTGCAAGCAGCAGAGCATCGCTGCGCTGGTTACTGGCACCATG
TACCTGATGCACATGTTCCACGTGTTCGACCTGCTGATGCGCATGGAACC
CGGCGACTGGAAACGTCAGGCGACTGGCCGTAAGTACTTTGAGGGAACAG
AGTCTGGTTCAACCGGGCTATTTGTGCTTTCCAAGCCAGTGGACGACTTT
CTATGCAAATGCTGCAGGTGCTACTATAAGTTGGCCAATTCTCAGATCCT
GTACTTCCGGCCGAACGCGGAGGTGGAGCAGCCGCACTTTATAGTCCGCA
TGTGGCAGTTCATTGGGGATGCGCGTAAAAAGTTCTTTTCGCTGCATCAG
ATCGAGAGTGACGAGAGTTTTCTATCAACGCCAACAATAACCACCAGTGA
ATCGGATATCACACCGGTGGACACGGAGTACAGTGTGTACATGGAAGAGC
AGGC
BS14677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 1197 | CG14000-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 46..833 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909457..5910244 | 804..17 | 3940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:32:48 has no hits.
BS14677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:11 Download gff for
BS14677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:47 Download gff for
BS14677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..833 | 8..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:12 Download gff for
BS14677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..833 | 8..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:12 Download gff for
BS14677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909457..5910252 | 8..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:47 Download gff for
BS14677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909457..5910252 | 8..804 | 99 | | Minus |
BS14677.complete Sequence
1229 bp assembled on 2006-11-01
GenBank Submission: FJ637755
> BS14677.complete
GAAGTTATCAGTCGACATGAACCAGGTTTGGGTGTTTTTTAAACTCATCG
AGGTGTTGCTGGGCAGTGTTTGTATGTTTTTCCACATACGCGGCTCATCC
TACTGGCCAGAGCGTACTCCTCATGTGATCCTATATTGTGCCACATTTTC
GTCCTTTACGGCGCTCGCCGCTCTAGGCGCGTTCCGACTGCTATTGGCTA
GGAGTACGGTGCTCTCCTCCCAGCTCCTGCTCACACTGAGTGCCGTGCTG
TCGCACTATTTCTGCGGCGTGCTGATAATGCGCACCGCCATGCTGGACCC
TCACCTGGCCTTCATCAATTCTACCATCGAGTATCTGGAACATCCGCACT
TTGCGCACTGCAAGCAGCAGAGCATCGCTGCGCTGGTTACTGGCACCATG
TACCTGATGCACATGTTCCACGTGTTCGACCTGCTGATGCGCATGGAACC
CGGCGACTGGAAACGTCAGGCGACTGGCCGTAAGTACTTTGAGGGAACAG
AGTCTGGTTCAACCGGGCTATTTGTGCTTTCCAAGCCAGTGGACGACTTT
CTATGCAAATGCTGCAGGTGCTACTATAAGTTGGCCAATTCTCAGATCCT
GTACTTCCGGCCGAACGCGGAGGTGGAGCAGCCGCACTTTATAGTCCGCA
TGTGGCAGTTCATTGGGGATGCGCGTAAAAAGTTCTTTTCGCTGCATCAG
ATCGAGAGTGACGAGAGTTTTCTATCAACGCCAACAATAACCACCAGTGA
ATCGGATATCACACCGGTGGACACGGAGTACAGTGTGTACATGGAAGAGC
AGGCCAATAAGATGCGCAGGTCTGCTTCAGCCTGGCGCGGCTCCAGCGAT
TCCTCGAGCTTGTGGGCCAAAATCGAGGACAGGAGCACTGTTAGCCTTGT
TTCAACTCGGTCAAGTGAGAACAGCGAGGCCACAATGAAACCCATTCAAA
TGGATCGGAAGCTAGCCCGGCGATCTTCCATGTGGGCGGACACTGAGAAA
AGGGAGAAATCGGAGATTTTGCTGGTAGAACAGGGCTCTAGCTATTCTCG
GCTCAGAACTTTAAGCAATGCTGAATTGGTCCATAAGCCAAGCGATGCGG
GAGAAAAGGAACAACAAGTTCCAGATGCAGCCAACCCAAATATTACAAAT
GAAGAAGCTACGAACTCACACATCGAATTCTCTTTGAAGCCTGGAACTGA
GAAAACTTCGTGAAAGCTTTCTAGACCAT
BS14677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1197 | CG14000-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 46..1243 | 17..1214 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909047..5910244 | 1214..17 | 5990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:03:33 has no hits.
BS14677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:42 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:37 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..1246 | 8..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:22 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 46..1241 | 17..1212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:42 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..1246 | 8..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:48 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 46..1241 | 17..1212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:48 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909049..5910244 | 17..1212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:22 Download gff for
BS14677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909049..5910244 | 17..1212 | 100 | | Minus |
BS14677.pep Sequence
Translation from 16 to 1212
> BS14677.pep
MNQVWVFFKLIEVLLGSVCMFFHIRGSSYWPERTPHVILYCATFSSFTAL
AALGAFRLLLARSTVLSSQLLLTLSAVLSHYFCGVLIMRTAMLDPHLAFI
NSTIEYLEHPHFAHCKQQSIAALVTGTMYLMHMFHVFDLLMRMEPGDWKR
QATGRKYFEGTESGSTGLFVLSKPVDDFLCKCCRCYYKLANSQILYFRPN
AEVEQPHFIVRMWQFIGDARKKFFSLHQIESDESFLSTPTITTSESDITP
VDTEYSVYMEEQANKMRRSASAWRGSSDSSSLWAKIEDRSTVSLVSTRSS
ENSEATMKPIQMDRKLARRSSMWADTEKREKSEILLVEQGSSYSRLRTLS
NAELVHKPSDAGEKEQQVPDAANPNITNEEATNSHIEFSLKPGTEKTS*
BS14677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 398 | CG14000-PA | 1..398 | 1..398 | 2067 | 100 | Plus |
