Clone Sequence Records
BS14678.3prime Sequence
707 bp (704 high quality bases) assembled on 2006-10-13
> BS14678.3prime
ATGGTCTAGAAAGCTTTCACGGCCAGAAGTTGCACTTCTCATCTTTGATG
ATCGGCTCACCGCTGATACCATCATCTTCCTTCTGTTTAGGTGGAAATAC
ACGCATTCCAATGCCAGGATTTTTCTGAGTATTGTGGAACTTCATCATCA
GCATGTCCCAGTCGTAGATGAGACCCGGCCGAAGATTGAGACCATTCCGC
AGCATCCGAAACATGCGGCAGATGAAGTCGTAGTTGGGCTTATCGTAGAA
TCCCATGCCGCGGCAGTAGTTTAAGTACATTGTGAACTCGCAGGGAAATC
CCTCGCAAAGTACCTCAATGCTTACCGAGATCTTTTTCTCATGTATGCGT
TCATATTTCTGCTGCTTGGTGGACGCCTTTAAATCCTGCCACGGCAGTGA
TCCCCGATTGAAGTACATAAGGACATAGCCAACGGCCACCATGTCATCCC
TTCTGGCGGATTCGACGCCGGCATGGGCGCCAATGGAGGCGTACCTGGCT
GTTCCCGTCAAGGAACGCTCCTCGCGATATGGTATATGGACACCAGTGGT
TATGTCCAGATACTTCTTGGATAGCCCGAAATCGATGAGGTACACTTGCT
TGGACATGGTACCCAGACCCATCAGGAAGTTATCCGGCTTGATGTCGCGG
TGCAGGAATCCCCGGTTATGGACATACTCCACCCGGCGAAGCATCTGTTC
GGCCAGA
BS14678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 1035 | CG2577-RA | 345..1035 | 707..17 | 3455 | 100 | Minus |
CG2048-PA | 1323 | dco-RA | 379..413 | 649..615 | 150 | 97.1 | Minus |
CG2048-PB | 1323 | dco-RB | 379..413 | 649..615 | 150 | 97.1 | Minus |
CG2048-PC | 1323 | dco-RC | 379..413 | 649..615 | 150 | 97.1 | Minus |
CG2028-PB | 1014 | CkIalpha-RB | 412..443 | 649..618 | 135 | 96.8 | Minus |
CG2028-PC | 1014 | CkIalpha-RC | 412..443 | 649..618 | 135 | 96.8 | Minus |
CG2028-PA | 1014 | CkIalpha-RA | 412..443 | 649..618 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 472..1164 | 707..15 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373589..12374281 | 707..15 | 3465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:40:02 has no hits.
BS14678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:11 Download gff for
BS14678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 346..1035 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:04 Download gff for
BS14678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 473..1164 | 15..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:04 Download gff for
BS14678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 473..1164 | 15..706 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:04 Download gff for
BS14678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373590..12374281 | 15..706 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:04 Download gff for
BS14678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267623..12268314 | 15..706 | 100 | | Minus |
BS14678.5prime Sequence
841 bp (680 high quality bases) assembled on 2006-10-13
> BS14678.5prime
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAACAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGAATTCTACAATAAGCCCAACTACAAC
BS14678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 1035 | CG2577-RA | 1..822 | 17..838 | 4035 | 99.6 | Plus |
CG2048-PA | 1323 | dco-RA | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2048-PB | 1323 | dco-RB | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2048-PC | 1323 | dco-RC | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2028-PB | 1014 | CkIalpha-RB | 412..443 | 419..450 | 135 | 96.8 | Plus |
CG2028-PC | 1014 | CkIalpha-RC | 412..443 | 419..450 | 135 | 96.8 | Plus |
CG2028-PA | 1014 | CkIalpha-RA | 412..443 | 419..450 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 128..949 | 17..838 | 4065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373245..12374066 | 17..838 | 4065 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:52 has no hits.
BS14678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:12 Download gff for
BS14678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:23 Download gff for
BS14678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 121..952 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:14 Download gff for
BS14678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 121..952 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:14 Download gff for
BS14678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373238..12374069 | 9..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:23 Download gff for
BS14678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267271..12268102 | 9..841 | 99 | | Plus |
BS14678.complete Sequence
1067 bp assembled on 2006-11-01
GenBank Submission: FJ637756
> BS14678.complete
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGGATTCTACGATAAGCCCAACTACGACTTCATCTGC
CGCATGTTTCGGATGCTGCGGAATGGTCTCAATCTTCGGCCGGGTCTCAT
CTACGACTGGGACATGCTGATGATGAAGTTCCACAATACTCAGAAAAATC
CTGGCATTGGAATGCGTGTATTTCCACCTAAACAGAAGGAAGATGATGGT
ATCAGCGGTGAGCCGATCATCAAAGATGAGAAGTGCAACTTCTGGCCGTG
AAAGCTTTCTAGACCAT
BS14678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1035 | CG2577-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 128..1164 | 17..1053 | 5185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373245..12374281 | 17..1053 | 5185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:30:27 has no hits.
BS14678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:43 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 1..1035 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:39 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 28..1071 | 9..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:43 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 128..1161 | 17..1050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:43 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 28..1071 | 9..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:30 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 128..1161 | 17..1050 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:30 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373245..12374278 | 17..1050 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:43 Download gff for
BS14678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267278..12268311 | 17..1050 | 100 | | Plus |
BS14678.pep Sequence
Translation from 16 to 1050
> BS14678.pep
MERLRSSQNREVRIGNYKVVRKIGCGSFGDIYLGIYIHSGERVAIKVESS
KVRHPQLNYERRIYRALRPAHGLPRIRYFHKEEHYQAMVMDLLGPSLERL
FQFCERAFTIKTVLLLAEQMLRRVEYVHNRGFLHRDIKPDNFLMGLGTMS
KQVYLIDFGLSKKYLDITTGVHIPYREERSLTGTARYASIGAHAGVESAR
RDDMVAVGYVLMYFNRGSLPWQDLKASTKQQKYERIHEKKISVSIEVLCE
GFPCEFTMYLNYCRGMGFYDKPNYDFICRMFRMLRNGLNLRPGLIYDWDM
LMMKFHNTQKNPGIGMRVFPPKQKEDDGISGEPIIKDEKCNFWP*
BS14678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 344 | CG2577-PA | 1..344 | 1..344 | 1840 | 100 | Plus |
CkIalpha-PG | 337 | CG2028-PG | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PF | 337 | CG2028-PF | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PD | 337 | CG2028-PD | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PE | 337 | CG2028-PE | 4..337 | 1..337 | 1002 | 56.7 | Plus |