Clone BS14678 Report

Search the DGRC for BS14678

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG2577-RA
Protein status:BS14678.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14678.3prime Sequence

707 bp (704 high quality bases) assembled on 2006-10-13

> BS14678.3prime
ATGGTCTAGAAAGCTTTCACGGCCAGAAGTTGCACTTCTCATCTTTGATG
ATCGGCTCACCGCTGATACCATCATCTTCCTTCTGTTTAGGTGGAAATAC
ACGCATTCCAATGCCAGGATTTTTCTGAGTATTGTGGAACTTCATCATCA
GCATGTCCCAGTCGTAGATGAGACCCGGCCGAAGATTGAGACCATTCCGC
AGCATCCGAAACATGCGGCAGATGAAGTCGTAGTTGGGCTTATCGTAGAA
TCCCATGCCGCGGCAGTAGTTTAAGTACATTGTGAACTCGCAGGGAAATC
CCTCGCAAAGTACCTCAATGCTTACCGAGATCTTTTTCTCATGTATGCGT
TCATATTTCTGCTGCTTGGTGGACGCCTTTAAATCCTGCCACGGCAGTGA
TCCCCGATTGAAGTACATAAGGACATAGCCAACGGCCACCATGTCATCCC
TTCTGGCGGATTCGACGCCGGCATGGGCGCCAATGGAGGCGTACCTGGCT
GTTCCCGTCAAGGAACGCTCCTCGCGATATGGTATATGGACACCAGTGGT
TATGTCCAGATACTTCTTGGATAGCCCGAAATCGATGAGGTACACTTGCT
TGGACATGGTACCCAGACCCATCAGGAAGTTATCCGGCTTGATGTCGCGG
TGCAGGAATCCCCGGTTATGGACATACTCCACCCGGCGAAGCATCTGTTC
GGCCAGA

BS14678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 1035 CG2577-RA 345..1035 707..17 3455 100 Minus
CG2048-PA 1323 dco-RA 379..413 649..615 150 97.1 Minus
CG2048-PB 1323 dco-RB 379..413 649..615 150 97.1 Minus
CG2048-PC 1323 dco-RC 379..413 649..615 150 97.1 Minus
CG2028-PB 1014 CkIalpha-RB 412..443 649..618 135 96.8 Minus
CG2028-PC 1014 CkIalpha-RC 412..443 649..618 135 96.8 Minus
CG2028-PA 1014 CkIalpha-RA 412..443 649..618 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 472..1164 707..15 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373589..12374281 707..15 3465 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:40:02 has no hits.

BS14678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:11 Download gff for BS14678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 346..1035 17..706 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:04 Download gff for BS14678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 473..1164 15..706 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:04 Download gff for BS14678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 473..1164 15..706 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:04 Download gff for BS14678.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12373590..12374281 15..706 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:04 Download gff for BS14678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267623..12268314 15..706 100   Minus

BS14678.5prime Sequence

841 bp (680 high quality bases) assembled on 2006-10-13

> BS14678.5prime
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAACAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGAATTCTACAATAAGCCCAACTACAAC

BS14678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 1035 CG2577-RA 1..822 17..838 4035 99.6 Plus
CG2048-PA 1323 dco-RA 379..413 419..453 150 97.1 Plus
CG2048-PB 1323 dco-RB 379..413 419..453 150 97.1 Plus
CG2048-PC 1323 dco-RC 379..413 419..453 150 97.1 Plus
CG2028-PB 1014 CkIalpha-RB 412..443 419..450 135 96.8 Plus
CG2028-PC 1014 CkIalpha-RC 412..443 419..450 135 96.8 Plus
CG2028-PA 1014 CkIalpha-RA 412..443 419..450 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 128..949 17..838 4065 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373245..12374066 17..838 4065 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 03:59:52 has no hits.

BS14678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:12 Download gff for BS14678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:23 Download gff for BS14678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 121..952 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:14 Download gff for BS14678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 121..952 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:14 Download gff for BS14678.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12373238..12374069 9..841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:23 Download gff for BS14678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267271..12268102 9..841 99   Plus

BS14678.complete Sequence

1067 bp assembled on 2006-11-01

GenBank Submission: FJ637756

> BS14678.complete
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGGATTCTACGATAAGCCCAACTACGACTTCATCTGC
CGCATGTTTCGGATGCTGCGGAATGGTCTCAATCTTCGGCCGGGTCTCAT
CTACGACTGGGACATGCTGATGATGAAGTTCCACAATACTCAGAAAAATC
CTGGCATTGGAATGCGTGTATTTCCACCTAAACAGAAGGAAGATGATGGT
ATCAGCGGTGAGCCGATCATCAAAGATGAGAAGTGCAACTTCTGGCCGTG
AAAGCTTTCTAGACCAT

BS14678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1035 CG2577-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 128..1164 17..1053 5185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373245..12374281 17..1053 5185 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:30:27 has no hits.

BS14678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:43 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 1..1035 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:39 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 28..1071 9..1053 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:43 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 128..1161 17..1050 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:43 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 28..1071 9..1053 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:30 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 128..1161 17..1050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:30 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
X 12373245..12374278 17..1050 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:43 Download gff for BS14678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267278..12268311 17..1050 100   Plus

BS14678.pep Sequence

Translation from 16 to 1050

> BS14678.pep
MERLRSSQNREVRIGNYKVVRKIGCGSFGDIYLGIYIHSGERVAIKVESS
KVRHPQLNYERRIYRALRPAHGLPRIRYFHKEEHYQAMVMDLLGPSLERL
FQFCERAFTIKTVLLLAEQMLRRVEYVHNRGFLHRDIKPDNFLMGLGTMS
KQVYLIDFGLSKKYLDITTGVHIPYREERSLTGTARYASIGAHAGVESAR
RDDMVAVGYVLMYFNRGSLPWQDLKASTKQQKYERIHEKKISVSIEVLCE
GFPCEFTMYLNYCRGMGFYDKPNYDFICRMFRMLRNGLNLRPGLIYDWDM
LMMKFHNTQKNPGIGMRVFPPKQKEDDGISGEPIIKDEKCNFWP*

BS14678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 344 CG2577-PA 1..344 1..344 1840 100 Plus
CkIalpha-PG 337 CG2028-PG 4..337 1..337 1002 56.7 Plus
CkIalpha-PF 337 CG2028-PF 4..337 1..337 1002 56.7 Plus
CkIalpha-PD 337 CG2028-PD 4..337 1..337 1002 56.7 Plus
CkIalpha-PE 337 CG2028-PE 4..337 1..337 1002 56.7 Plus