Clone BS14681 Report

Search the DGRC for BS14681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptPhae1-RA
Protein status:BS14681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14681.3prime Sequence

843 bp (754 high quality bases) assembled on 2006-10-13

> BS14681.3prime
ATGGTCTAGAAAGCTTTTAGGACACCTGCTGGTTAGCCGATATCCACGAT
ATAAACGACGAGACCTGCACGTAAACCGACGGTGAGTTGGCCTGACCACA
AGGTAACTTGCCCCAGGACACGATGCCAATAAGGACATTGCCCTGGACCA
GTGGTCCTCCCGAATCCGAGGTGCAAATGCTAACGCCGCCAGTTAGAGGA
CCAGTGCACAGATTGGTCGAGTGGACATCGCTGCCCTTGGTGCCCAGGGC
GCTTTCGCAGGAGCTCAGCGAAATGATAGGCACATTGGTGGCCACCTGCA
GGGTCGACGGATAGGAGGCGGTATTCGTGGTGCTAGTGCTGCCCCATCCG
TACAGATTGGCGGTGCCAGTGGGCACCACTCCCGAGGATGGTAGCGTCAC
TGGGGCAACGGCGGCGCTCCAAACGAAGGCGGTGGGCGTGTAGATCATTC
CGATGTCATAGGGCACAGTTCCGCCGGTGTACAAGTCATTGATCACGAAG
TACGTGATGCTCCGCGTCTGCGTAGTGCTTGCAGTTCCGTCCACCGCGAT
GCTTCCGGCCACCAAGGTGCTGCCCAGCACCTGGTTACTATTGGTCAGGC
AGTGGGCAGCGGTGACTAGCCAGTTGGCATTCAGAATGCTGGCGGCACAG
TAATGGGTGCCACCGTACTGCATGGACACCGCATAGGGAGCACTATTCAC
CGCTGCCGGAGATCCACCCACGACACGCCCCTCGGGTGCGCCGATAGCCA
CTCCGGATATTCGGCATATGCCCAGTAGGAAAAGAAGCCCACTGGCCAAC
GACTTTGTTTGGCTGCCGTTCGCTAACATGTCCACTGAATACT

BS14681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16996-PA 813 CG16996-RA 19..813 811..17 3925 99.7 Minus
CG16997-PA 822 CG16997-RA 364..417 478..425 220 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 1248 CG16996-RB 227..1040 829..16 3995 99.5 Minus
Phae1-RA 904 CG16996-RA 25..838 829..16 3995 99.5 Minus
Phae2-RC 1147 CG16997-RC 119..826 737..30 1080 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12109643..12110456 829..16 3980 99.3 Minus
2L 23513712 2L 12111228..12111935 737..30 1065 76.7 Minus
Blast to na_te.dros performed on 2015-02-10 17:10:13 has no hits.

BS14681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:14 Download gff for BS14681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16996-PA 1..813 17..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:40 Download gff for BS14681.3prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 187..1000 16..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:34 Download gff for BS14681.3prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 25..838 16..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:34 Download gff for BS14681.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12109643..12110456 16..829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:40 Download gff for BS14681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12109643..12110456 16..829 99   Minus

BS14681.5prime Sequence

715 bp (682 high quality bases) assembled on 2006-10-13

> BS14681.5prime
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTT

BS14681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16996-PA 813 CG16996-RA 1..699 17..715 3470 99.8 Plus
CG16997-PA 822 CG16997-RA 364..417 368..421 220 96.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 1248 CG16996-RB 227..925 17..715 3480 99.9 Plus
Phae1-RA 904 CG16996-RA 25..723 17..715 3480 99.9 Plus
Phae2-RC 1147 CG16997-RC 119..715 109..705 870 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12109643..12110341 17..715 3480 99.9 Plus
2L 23513712 2L 12111228..12111824 109..705 855 76.2 Plus
Blast to na_te.dros performed on 2015-02-10 21:43:28 has no hits.

BS14681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:14 Download gff for BS14681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16996-PA 1..699 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:40 Download gff for BS14681.5prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 187..885 17..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:09 Download gff for BS14681.5prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 25..723 17..715 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:09 Download gff for BS14681.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12109643..12110341 17..715 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:40 Download gff for BS14681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12109643..12110341 17..715 99   Plus

BS14681.complete Sequence

845 bp assembled on 2006-11-01

GenBank Submission: FJ637757

> BS14681.complete
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTTATTGGCATCGTGTCCTGGGGCAAGTTACCTTGTGG
TCAGGCCAACTCACCGTCGGTTTACGTGCAGGTCTCGTCGTTTATATCGT
GGATATCGGCTAACCAGCAGGTGTCCTAAAAGCTTTCTAGACCAT

BS14681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 813 CG16996-PB 1..813 17..829 4050 99.9 Plus
Phae1-RA 813 CG16996-PA 1..813 17..829 4050 99.9 Plus
Phae2-RC 798 CG16997-PC 81..788 109..816 1065 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 1248 CG16996-RB 227..1040 17..830 4055 99.9 Plus
Phae1-RA 904 CG16996-RA 25..838 17..830 4055 99.9 Plus
Phae2-RC 1147 CG16997-RC 119..826 109..816 1065 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12109643..12110456 17..830 4055 99.9 Plus
2L 23513712 2L 12111228..12111935 109..816 1065 76.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:37:21 has no hits.

BS14681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:15 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
CG16996-RA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:12 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
CG16996-RA 187..1000 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:49 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 192..997 22..827 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:15 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
CG16996-RA 187..1000 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:48 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 30..835 22..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:48 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12109648..12110453 22..827 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:49 Download gff for BS14681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12109648..12110453 22..827 99   Plus

BS14681.pep Sequence

Translation from 16 to 828

> BS14681.pep
MLANGQQTKSLASGLLLLLGICRISGVAIGAPEGRVVGGSPAAVNSAPYA
VSMQYGGTHYCAASILNANWLVTAAHCLTNSNQVLGSTLVAGSIAVDGTA
STTQTRSITYFVINDLYTGGTVPYDIGMIYTPTAFVWSAAVAPVTLPSSG
VVPTGTANLYGWGSTSTTNTASYPSTLQVATNVPIISLSSCESALGTKGS
DVHSTNLCTGPLTGGVSICTSDSGGPLVQGNVLIGIVSWGKLPCGQANSP
SVYVQVSSFISWISANQQVS*

BS14681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-PB 270 CG16996-PB 1..270 1..270 1390 100 Plus
Phae1-PA 270 CG16996-PA 1..270 1..270 1390 100 Plus
Phae2-PC 265 CG16997-PC 5..264 9..268 1082 78.5 Plus
Phae2-PB 265 CG16997-PB 5..264 9..268 1082 78.5 Plus
CG7142-PA 334 CG7142-PA 86..328 42..270 607 50.4 Plus