Clone Sequence Records
BS14681.3prime Sequence
843 bp (754 high quality bases) assembled on 2006-10-13
> BS14681.3prime
ATGGTCTAGAAAGCTTTTAGGACACCTGCTGGTTAGCCGATATCCACGAT
ATAAACGACGAGACCTGCACGTAAACCGACGGTGAGTTGGCCTGACCACA
AGGTAACTTGCCCCAGGACACGATGCCAATAAGGACATTGCCCTGGACCA
GTGGTCCTCCCGAATCCGAGGTGCAAATGCTAACGCCGCCAGTTAGAGGA
CCAGTGCACAGATTGGTCGAGTGGACATCGCTGCCCTTGGTGCCCAGGGC
GCTTTCGCAGGAGCTCAGCGAAATGATAGGCACATTGGTGGCCACCTGCA
GGGTCGACGGATAGGAGGCGGTATTCGTGGTGCTAGTGCTGCCCCATCCG
TACAGATTGGCGGTGCCAGTGGGCACCACTCCCGAGGATGGTAGCGTCAC
TGGGGCAACGGCGGCGCTCCAAACGAAGGCGGTGGGCGTGTAGATCATTC
CGATGTCATAGGGCACAGTTCCGCCGGTGTACAAGTCATTGATCACGAAG
TACGTGATGCTCCGCGTCTGCGTAGTGCTTGCAGTTCCGTCCACCGCGAT
GCTTCCGGCCACCAAGGTGCTGCCCAGCACCTGGTTACTATTGGTCAGGC
AGTGGGCAGCGGTGACTAGCCAGTTGGCATTCAGAATGCTGGCGGCACAG
TAATGGGTGCCACCGTACTGCATGGACACCGCATAGGGAGCACTATTCAC
CGCTGCCGGAGATCCACCCACGACACGCCCCTCGGGTGCGCCGATAGCCA
CTCCGGATATTCGGCATATGCCCAGTAGGAAAAGAAGCCCACTGGCCAAC
GACTTTGTTTGGCTGCCGTTCGCTAACATGTCCACTGAATACT
BS14681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16996-PA | 813 | CG16996-RA | 19..813 | 811..17 | 3925 | 99.7 | Minus |
CG16997-PA | 822 | CG16997-RA | 364..417 | 478..425 | 220 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 1248 | CG16996-RB | 227..1040 | 829..16 | 3995 | 99.5 | Minus |
Phae1-RA | 904 | CG16996-RA | 25..838 | 829..16 | 3995 | 99.5 | Minus |
Phae2-RC | 1147 | CG16997-RC | 119..826 | 737..30 | 1080 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12109643..12110456 | 829..16 | 3980 | 99.3 | Minus |
2L | 23513712 | 2L | 12111228..12111935 | 737..30 | 1065 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:13 has no hits.
BS14681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:14 Download gff for
BS14681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-PA | 1..813 | 17..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:40 Download gff for
BS14681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 187..1000 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:34 Download gff for
BS14681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 25..838 | 16..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:34 Download gff for
BS14681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12109643..12110456 | 16..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:40 Download gff for
BS14681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12109643..12110456 | 16..829 | 99 | | Minus |
BS14681.5prime Sequence
715 bp (682 high quality bases) assembled on 2006-10-13
> BS14681.5prime
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTT
BS14681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16996-PA | 813 | CG16996-RA | 1..699 | 17..715 | 3470 | 99.8 | Plus |
CG16997-PA | 822 | CG16997-RA | 364..417 | 368..421 | 220 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 1248 | CG16996-RB | 227..925 | 17..715 | 3480 | 99.9 | Plus |
Phae1-RA | 904 | CG16996-RA | 25..723 | 17..715 | 3480 | 99.9 | Plus |
Phae2-RC | 1147 | CG16997-RC | 119..715 | 109..705 | 870 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12109643..12110341 | 17..715 | 3480 | 99.9 | Plus |
2L | 23513712 | 2L | 12111228..12111824 | 109..705 | 855 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:43:28 has no hits.
BS14681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:14 Download gff for
BS14681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-PA | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:40 Download gff for
BS14681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 187..885 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:09 Download gff for
BS14681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 25..723 | 17..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:09 Download gff for
BS14681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12109643..12110341 | 17..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:40 Download gff for
BS14681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12109643..12110341 | 17..715 | 99 | | Plus |
BS14681.complete Sequence
845 bp assembled on 2006-11-01
GenBank Submission: FJ637757
> BS14681.complete
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTTATTGGCATCGTGTCCTGGGGCAAGTTACCTTGTGG
TCAGGCCAACTCACCGTCGGTTTACGTGCAGGTCTCGTCGTTTATATCGT
GGATATCGGCTAACCAGCAGGTGTCCTAAAAGCTTTCTAGACCAT
BS14681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 813 | CG16996-PB | 1..813 | 17..829 | 4050 | 99.9 | Plus |
Phae1-RA | 813 | CG16996-PA | 1..813 | 17..829 | 4050 | 99.9 | Plus |
Phae2-RC | 798 | CG16997-PC | 81..788 | 109..816 | 1065 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 1248 | CG16996-RB | 227..1040 | 17..830 | 4055 | 99.9 | Plus |
Phae1-RA | 904 | CG16996-RA | 25..838 | 17..830 | 4055 | 99.9 | Plus |
Phae2-RC | 1147 | CG16997-RC | 119..826 | 109..816 | 1065 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12109643..12110456 | 17..830 | 4055 | 99.9 | Plus |
2L | 23513712 | 2L | 12111228..12111935 | 109..816 | 1065 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:37:21 has no hits.
BS14681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:15 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-RA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:12 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-RA | 187..1000 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:49 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 192..997 | 22..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:15 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-RA | 187..1000 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:48 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 30..835 | 22..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:48 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12109648..12110453 | 22..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:49 Download gff for
BS14681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12109648..12110453 | 22..827 | 99 | | Plus |
BS14681.pep Sequence
Translation from 16 to 828
> BS14681.pep
MLANGQQTKSLASGLLLLLGICRISGVAIGAPEGRVVGGSPAAVNSAPYA
VSMQYGGTHYCAASILNANWLVTAAHCLTNSNQVLGSTLVAGSIAVDGTA
STTQTRSITYFVINDLYTGGTVPYDIGMIYTPTAFVWSAAVAPVTLPSSG
VVPTGTANLYGWGSTSTTNTASYPSTLQVATNVPIISLSSCESALGTKGS
DVHSTNLCTGPLTGGVSICTSDSGGPLVQGNVLIGIVSWGKLPCGQANSP
SVYVQVSSFISWISANQQVS*
BS14681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-PB | 270 | CG16996-PB | 1..270 | 1..270 | 1390 | 100 | Plus |
Phae1-PA | 270 | CG16996-PA | 1..270 | 1..270 | 1390 | 100 | Plus |
Phae2-PC | 265 | CG16997-PC | 5..264 | 9..268 | 1082 | 78.5 | Plus |
Phae2-PB | 265 | CG16997-PB | 5..264 | 9..268 | 1082 | 78.5 | Plus |
CG7142-PA | 334 | CG7142-PA | 86..328 | 42..270 | 607 | 50.4 | Plus |