Clone BS14682 Report

Search the DGRC for BS14682

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG15296-RA
Protein status:BS14682.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14682.3prime Sequence

540 bp (540 high quality bases) assembled on 2006-10-13

> BS14682.3prime
ATGGTCTAGAAAGCTTTTAAACCCTCTGTTCAAGAGCTCCATTTCCCTCT
TCCCCCGCAAAATTATCTACGGTCTTTGGTTTCTCAAATGGGACTAAATC
CTCGAAAGATCCATCGCCAGCTGCAGAATCTGGTGAATCAATAATCAGTT
GCTCCTTATTTGTGGAAGTATTCCACCATTTTGAATATTCTTTGTGACGC
AATTCCTTGGCCTTTTCCACCAAATCCAGACAGGTGACCTTGGCACCGTC
GGCCAATTCCTCCGAATAGTTGGGTATGTTTCGAATGATACGAAAAGTGC
CCTTCACTCCTTCATTGTAGTATTTCCGGGATAGCTCACCCACGCTCAGA
TCGCTCTCATCTAACTTCAGCGTTCGTCGCAGAAGTCCAAATACTGGTTG
AAGACCATTGGTGATCTGATCGAGCAGGTGGTCCGTCTCCTCTGTCTTAC
CCCAAACTCCAACTCGATTGGTTATGTAGACGGTCATCGAGACCGCTGCA
GTTCGATACATCAGTGTAGTAAACATGTCGACTGATAACT

BS14682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-PA 510 CG15296-RA 1..510 526..17 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-RB 686 CG15296-RB 40..550 526..16 2555 100 Minus
CG15296-RA 690 CG15296-RA 44..554 526..16 2555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10565978..10566488 16..526 2555 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:10:25 has no hits.

BS14682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:15 Download gff for BS14682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-PA 1..510 17..526 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:43 Download gff for BS14682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 35..564 7..535 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:36 Download gff for BS14682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 35..564 7..535 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:36 Download gff for BS14682.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10565968..10566497 7..535 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:43 Download gff for BS14682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10460001..10460530 7..535 98   Plus

BS14682.5prime Sequence

540 bp (540 high quality bases) assembled on 2006-10-13

> BS14682.5prime
GAAGTTATCAGTCGACATGTTTACTACACTGATGTATCGAACTGCAGCGG
TCTCGATGACCGTCTACATAACCAATCGAGTTGGAGTTTGGGGTAAGACA
GAGGAGACGGACCACCTGCTCGATCAGATCACCAATGGTCTTCAACCAGT
ATTTGGACTTCTGCGACGAACGCTGAAGTTAGATGAGAGCGATCTGAGCG
TGGGTGAGCTATCCCGGAAATACTACAATGAAGGAGTGAAGGGCACTTTT
CGTATCATTCGAAACATACCCAACTATTCGGAGGAATTGGCCGACGGTGC
CAAGGTCACCTGTCTGGATTTGGTGGAAAAGGCCAAGGAATTGCGTCACA
AAGAATATTCAAAATGGTGGAATACTTCCACAAATAAGGAGCAACTGATT
ATTGATTCACCAGATTCTGCAGCTGGCGATGGATCTTTCGAGGATTTAGT
CCCATTTGAGAAACCAAAGACCGTAGATAATTTTGCGGGGGAAGAGGGAA
ATGGAGCTCTTGAACAGAGGGTTTAAAAGCTTTCTAGACC

BS14682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-PA 510 CG15296-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-RB 686 CG15296-RB 40..550 17..527 2555 100 Plus
CG15296-RA 690 CG15296-RA 44..554 17..527 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10565978..10566488 527..17 2555 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:16:48 has no hits.

BS14682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:15 Download gff for BS14682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-PA 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:09 Download gff for BS14682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 35..564 8..536 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:18 Download gff for BS14682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 35..564 8..536 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:18 Download gff for BS14682.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10565968..10566497 8..536 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:09 Download gff for BS14682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10460001..10460530 8..536 98   Minus

BS14682.complete Sequence

542 bp assembled on 2006-11-01

GenBank Submission: FJ637758

> BS14682.complete
GAAGTTATCAGTCGACATGTTTACTACACTGATGTATCGAACTGCAGCGG
TCTCGATGACCGTCTACATAACCAATCGAGTTGGAGTTTGGGGTAAGACA
GAGGAGACGGACCACCTGCTCGATCAGATCACCAATGGTCTTCAACCAGT
ATTTGGACTTCTGCGACGAACGCTGAAGTTAGATGAGAGCGATCTGAGCG
TGGGTGAGCTATCCCGGAAATACTACAATGAAGGAGTGAAGGGCACTTTT
CGTATCATTCGAAACATACCCAACTATTCGGAGGAATTGGCCGACGGTGC
CAAGGTCACCTGTCTGGATTTGGTGGAAAAGGCCAAGGAATTGCGTCACA
AAGAATATTCAAAATGGTGGAATACTTCCACAAATAAGGAGCAACTGATT
ATTGATTCACCAGATTCTGCAGCTGGCGATGGATCTTTCGAGGATTTAGT
CCCATTTGAGAAACCAAAGACCGTAGATAATTTTGCGGGGGAAGAGGGAA
ATGGAGCTCTTGAACAGAGGGTTTAAAAGCTTTCTAGACCAT

BS14682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-RB 510 CG15296-PB 1..510 17..526 2550 100 Plus
CG15296-RA 510 CG15296-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-RB 686 CG15296-RB 40..550 17..527 2555 100 Plus
CG15296-RA 690 CG15296-RA 44..554 17..527 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10565978..10566488 527..17 2555 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:30 has no hits.

BS14682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:44 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:43 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 3..532 8..536 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:45 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 50..551 23..524 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:45 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 3..532 8..536 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:09 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
CG15296-RA 50..551 23..524 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:09 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
X 10565981..10566482 23..524 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:45 Download gff for BS14682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10460014..10460515 23..524 100   Minus

BS14682.pep Sequence

Translation from 16 to 525

> BS14682.pep
MFTTLMYRTAAVSMTVYITNRVGVWGKTEETDHLLDQITNGLQPVFGLLR
RTLKLDESDLSVGELSRKYYNEGVKGTFRIIRNIPNYSEELADGAKVTCL
DLVEKAKELRHKEYSKWWNTSTNKEQLIIDSPDSAAGDGSFEDLVPFEKP
KTVDNFAGEEGNGALEQRV*

BS14682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15296-PB 169 CG15296-PB 1..169 1..169 879 100 Plus
CG15296-PA 169 CG15296-PA 1..169 1..169 879 100 Plus
CG7603-PA 122 CG7603-PA 1..108 1..104 159 36.1 Plus