Clone Sequence Records
BS14683.3prime Sequence
819 bp (757 high quality bases) assembled on 2006-10-13
> BS14683.3prime
ATGGTCTAGAAAGCTTCTACATCGTCTGTGTGTTCTCGATGACCTTCTCG
TTGTCGTAGATCTCCTTGGCGTAGCACAGGTTGGGGTAGTCGTAGGCAGC
TCCATAACGGTTCTTGCACCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGA
CAGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAG
TGGTTGTAAAAGTCCCGGGAGAAGCGCACCGCGGCACATCCCACATGGGT
GTTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCTTTGTTGGGAA
GCTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCA
GCAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTC
CGTCTCGGCTCCGCTGTACTGGAACACGGCGTTGTTCTGGCCGGCGTAGG
CGAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTT
ACGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGC
CATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACATTGT
TGCGCAGCTCGTTGAAGAGATTGAGTATGAGTTTGTGGTGCGGCTCGATC
TTCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTT
GTTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCG
CTGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGAGACTTAATG
GCCATGTCGACTGATAACT
BS14683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5106-PA | 789 | scpr-C-RA | 1..789 | 805..17 | 3845 | 99.4 | Minus |
CG17210-PA | 789 | scpr-B-RA | 1..789 | 805..17 | 3645 | 98.4 | Minus |
CG5207-PA | 795 | scpr-A-RA | 103..794 | 709..18 | 3110 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 805..17 | 3885 | 99.5 | Minus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 805..17 | 3885 | 99.5 | Minus |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 805..17 | 3765 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226377 | 691..17 | 3315 | 99.4 | Minus |
3R | 32079331 | 3R | 11240138..11240812 | 17..691 | 3210 | 98.4 | Plus |
3R | 32079331 | 3R | 11241384..11242062 | 688..10 | 3185 | 97.9 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 805..692 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11240866..11240979 | 692..805 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:00:21 has no hits.
BS14683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:15 Download gff for
BS14683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:31 Download gff for
BS14683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 13..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:04 Download gff for
BS14683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 13..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:04 Download gff for
BS14683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 692..805 | 100 | -> | Minus |
3R | 11225703..11226373 | 19..691 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:31 Download gff for
BS14683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 692..805 | 100 | -> | Minus |
arm_3R | 7051425..7052095 | 19..691 | 99 | -> | Minus |
BS14683.5prime Sequence
819 bp (737 high quality bases) assembled on 2006-10-13
> BS14683.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAAGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTTCTAAAC
BS14683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5106-PA | 789 | scpr-C-RA | 1..789 | 17..805 | 3820 | 99.3 | Plus |
CG17210-PA | 789 | scpr-B-RA | 1..789 | 17..805 | 3620 | 98.3 | Plus |
CG5207-PA | 795 | scpr-A-RA | 103..794 | 113..804 | 3085 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 17..805 | 3870 | 99.4 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 17..805 | 3870 | 99.4 | Plus |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 17..805 | 3750 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226377 | 131..805 | 3300 | 99.3 | Plus |
3R | 32079331 | 3R | 11240138..11240812 | 805..131 | 3195 | 98.2 | Minus |
3R | 32079331 | 3R | 11241384..11242063 | 134..813 | 3175 | 97.8 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:17:13 has no hits.
BS14683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:16 Download gff for
BS14683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:14 Download gff for
BS14683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:25 Download gff for
BS14683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:25 Download gff for
BS14683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 17..130 | 100 | -> | Plus |
3R | 11225703..11226379 | 131..809 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:14 Download gff for
BS14683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 17..130 | 100 | -> | Plus |
arm_3R | 7051425..7052101 | 131..809 | 98 | | Plus |
BS14683.complete Sequence
821 bp assembled on 2006-11-01
GenBank Submission: FJ637759
> BS14683.complete
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACCAT
BS14683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 789 | CG5106-PB | 1..789 | 17..805 | 3885 | 99.5 | Plus |
scpr-C-RA | 789 | CG5106-PA | 1..789 | 17..805 | 3885 | 99.5 | Plus |
scpr-B-RA | 789 | CG17210-PA | 1..789 | 17..805 | 3765 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..805 | 17..805 | 3885 | 99.5 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..805 | 17..805 | 3885 | 99.5 | Plus |
scpr-B-RA | 898 | CG17210-RA | 13..801 | 17..805 | 3765 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226377 | 131..805 | 3315 | 99.4 | Plus |
3R | 32079331 | 3R | 11240138..11240812 | 805..131 | 3210 | 98.4 | Minus |
3R | 32079331 | 3R | 11241384..11242062 | 134..812 | 3185 | 97.9 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:50:52 has no hits.
BS14683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:46 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:45 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:01 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..805 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:46 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:22 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..805 | 17..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:22 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 17..130 | 100 | -> | Plus |
3R | 11225703..11226377 | 131..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:01 Download gff for
BS14683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 17..130 | 100 | -> | Plus |
arm_3R | 7051425..7052099 | 131..805 | 99 | | Plus |
BS14683.pep Sequence
Translation from 16 to 804
> BS14683.pep
MAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTM*
BS14683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-PB | 262 | CG5106-PB | 1..262 | 1..262 | 1389 | 100 | Plus |
scpr-C-PA | 262 | CG5106-PA | 1..262 | 1..262 | 1389 | 100 | Plus |
scpr-B-PA | 262 | CG17210-PA | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-A-PA | 264 | CG5207-PA | 9..264 | 7..262 | 1321 | 95.3 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 1..250 | 1..251 | 409 | 34.6 | Plus |