Clone BS14683 Report

Search the DGRC for BS14683

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptscpr-C-RA
Protein status:BS14683.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14683.3prime Sequence

819 bp (757 high quality bases) assembled on 2006-10-13

> BS14683.3prime
ATGGTCTAGAAAGCTTCTACATCGTCTGTGTGTTCTCGATGACCTTCTCG
TTGTCGTAGATCTCCTTGGCGTAGCACAGGTTGGGGTAGTCGTAGGCAGC
TCCATAACGGTTCTTGCACCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGA
CAGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAG
TGGTTGTAAAAGTCCCGGGAGAAGCGCACCGCGGCACATCCCACATGGGT
GTTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCTTTGTTGGGAA
GCTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCA
GCAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTC
CGTCTCGGCTCCGCTGTACTGGAACACGGCGTTGTTCTGGCCGGCGTAGG
CGAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTT
ACGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGC
CATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACATTGT
TGCGCAGCTCGTTGAAGAGATTGAGTATGAGTTTGTGGTGCGGCTCGATC
TTCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTT
GTTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCG
CTGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGAGACTTAATG
GCCATGTCGACTGATAACT

BS14683.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5106-PA 789 scpr-C-RA 1..789 805..17 3845 99.4 Minus
CG17210-PA 789 scpr-B-RA 1..789 805..17 3645 98.4 Minus
CG5207-PA 795 scpr-A-RA 103..794 709..18 3110 97.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..805 805..17 3885 99.5 Minus
scpr-C-RA 910 CG5106-RA 17..805 805..17 3885 99.5 Minus
scpr-B-RA 898 CG17210-RA 13..801 805..17 3765 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226377 691..17 3315 99.4 Minus
3R 32079331 3R 11240138..11240812 17..691 3210 98.4 Plus
3R 32079331 3R 11241384..11242062 688..10 3185 97.9 Minus
3R 32079331 3R 11225536..11225649 805..692 570 100 Minus
3R 32079331 3R 11240866..11240979 692..805 555 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 04:00:21 has no hits.

BS14683.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:15 Download gff for BS14683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 17..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:31 Download gff for BS14683.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 13..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:04 Download gff for BS14683.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 13..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:04 Download gff for BS14683.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 692..805 100 -> Minus
3R 11225703..11226373 19..691 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:31 Download gff for BS14683.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 692..805 100 -> Minus
arm_3R 7051425..7052095 19..691 99 -> Minus

BS14683.5prime Sequence

819 bp (737 high quality bases) assembled on 2006-10-13

> BS14683.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAAGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTTCTAAAC

BS14683.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5106-PA 789 scpr-C-RA 1..789 17..805 3820 99.3 Plus
CG17210-PA 789 scpr-B-RA 1..789 17..805 3620 98.3 Plus
CG5207-PA 795 scpr-A-RA 103..794 113..804 3085 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..805 17..805 3870 99.4 Plus
scpr-C-RA 910 CG5106-RA 17..805 17..805 3870 99.4 Plus
scpr-B-RA 898 CG17210-RA 13..801 17..805 3750 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226377 131..805 3300 99.3 Plus
3R 32079331 3R 11240138..11240812 805..131 3195 98.2 Minus
3R 32079331 3R 11241384..11242063 134..813 3175 97.8 Plus
3R 32079331 3R 11225536..11225649 17..130 570 100 Plus
3R 32079331 3R 11240866..11240979 130..17 555 99.1 Minus
Blast to na_te.dros performed on 2015-01-31 10:17:13 has no hits.

BS14683.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:16 Download gff for BS14683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:14 Download gff for BS14683.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:25 Download gff for BS14683.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:25 Download gff for BS14683.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 17..130 100 -> Plus
3R 11225703..11226379 131..809 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:14 Download gff for BS14683.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 17..130 100 -> Plus
arm_3R 7051425..7052101 131..809 98   Plus

BS14683.complete Sequence

821 bp assembled on 2006-11-01

GenBank Submission: FJ637759

> BS14683.complete
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGTAGAAGCTTTCTAGACCAT

BS14683.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 789 CG5106-PB 1..789 17..805 3885 99.5 Plus
scpr-C-RA 789 CG5106-PA 1..789 17..805 3885 99.5 Plus
scpr-B-RA 789 CG17210-PA 1..789 17..805 3765 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..805 17..805 3885 99.5 Plus
scpr-C-RA 910 CG5106-RA 17..805 17..805 3885 99.5 Plus
scpr-B-RA 898 CG17210-RA 13..801 17..805 3765 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226377 131..805 3315 99.4 Plus
3R 32079331 3R 11240138..11240812 805..131 3210 98.4 Minus
3R 32079331 3R 11241384..11242062 134..812 3185 97.9 Plus
3R 32079331 3R 11225536..11225649 17..130 570 100 Plus
3R 32079331 3R 11240866..11240979 130..17 555 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 10:50:52 has no hits.

BS14683.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:46 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:45 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:01 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..805 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:46 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:22 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..805 17..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:22 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 17..130 100 -> Plus
3R 11225703..11226377 131..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:01 Download gff for BS14683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 17..130 100 -> Plus
arm_3R 7051425..7052099 131..805 99   Plus

BS14683.pep Sequence

Translation from 16 to 804

> BS14683.pep
MAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTM*

BS14683.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-PB 262 CG5106-PB 1..262 1..262 1389 100 Plus
scpr-C-PA 262 CG5106-PA 1..262 1..262 1389 100 Plus
scpr-B-PA 262 CG17210-PA 1..262 1..262 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 7..262 1321 95.3 Plus
Ag5r2-PA 254 CG9540-PA 1..250 1..251 409 34.6 Plus