Clone BS14684 Report

Search the DGRC for BS14684

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG13039-RA
Protein status:BS14684.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14684.3prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS14684.3prime
ATGGTCTAGAAAGCTTTTACGCCAGGTGCTGGATCAGGTTCTCGTCATCC
GACCCGGAACTGTAAGACTGAATTTCGAGACGGGGGATTCGGATGGTGGG
CCCCACTCGATAGGTGGTGCTGGAAGATGAATTACCAATCACGTGGTTCT
CTGTATCGTCATCCTGGGTGCTGCTCAAGGAGCTCATGTAGCGAGAGGTT
GAGTTCACGAACTCGAAACCGACTCCCATTCTGGCCACGTTTTTGGCCAT
ATACTGTTCGCGCCACGCCTGGTTGGATTCCTCATGGTATTCCAGAGTTG
ATTCATCGGACACATCCTCGTTGGATTGCATCTGATGCAGTATAATGGCG
GGACTGGGCACCCAAATATCGCGACGACTGGTATTCGACATGTCGACTGA
TAACT

BS14684.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 375 CG13039-RA 1..375 391..17 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..456 392..17 1880 100 Minus
CG13040-RB 1419 CG13040-RB 76..333 392..135 1290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326307..16326682 17..392 1880 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:00:37 has no hits.

BS14684.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:16 Download gff for BS14684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 17..391 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:35 Download gff for BS14684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 17..392 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:30 Download gff for BS14684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 17..392 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:30 Download gff for BS14684.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16326307..16326682 17..392 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:35 Download gff for BS14684.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319407..16319782 17..392 100   Plus

BS14684.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS14684.5prime
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGTAAAAGCTTTCT
AGACC

BS14684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 375 CG13039-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..456 16..391 1880 100 Plus
CG13040-RB 1419 CG13040-RB 76..333 16..273 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326307..16326682 391..16 1880 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:00:23 has no hits.

BS14684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:17 Download gff for BS14684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:55 Download gff for BS14684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..391 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:29 Download gff for BS14684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:29 Download gff for BS14684.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16326307..16326682 16..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:55 Download gff for BS14684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319407..16319782 16..391 100   Minus

BS14684.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ637760

> BS14684.complete
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGTAAAAGCTTTCT
AGACCAT

BS14684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 375 CG13039-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..456 16..391 1880 100 Plus
CG13040-RB 1419 CG13040-RB 76..333 16..273 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326307..16326682 391..16 1880 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:08:09 has no hits.

BS14684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:07:25 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:53 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:47 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 82..454 17..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:07:25 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..391 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:36 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 82..454 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:36 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16326309..16326681 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:47 Download gff for BS14684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319409..16319781 17..389 100   Minus

BS14684.pep Sequence

Translation from 16 to 390

> BS14684.pep
MSNTSRRDIWVPSPAIILHQMQSNEDVSDESTLEYHEESNQAWREQYMAK
NVARMGVGFEFVNSTSRYMSSLSSTQDDDTENHVIGNSSSSTTYRVGPTI
RIPRLEIQSYSSGSDDENLIQHLA*

BS14684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 124 CG13039-PA 1..124 1..124 638 100 Plus