Clone Sequence Records
BS14687.complete Sequence
1793 bp assembled on 2009-12-07
GenBank Submission: KX805656
> BS14687.complete
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTA
TGACATACGTGATCGTGGTGCCAACCGTGGTGGCAATGATTTCGGCGGAG
GGCGCAATGATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAAC
ATGCTGGGCTTCAACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGG
AAACAACCAAGGTGGAAATAATGGAAATTTTGGAAATAACTCTGGACCCA
GCAATTTCGGCAACTTTGGTGGCGGCAACAACGGTGGAAATTCCGGCAAC
TTTGGAAACGACAGTGGTAACAGCGGAAACTTTGGAAACTTCGGCAATAA
TGGAGGCGGAAACTTCGGCGGCAACAACAACGGCGGCGGTGGTTTCAACA
GTGGCAACAACTTCAATTCTCCAGGAGGCGTTAATAATTTCGGCAACAAT
GGCGGCTCCAATTTTGGCGGCAATGGTGGAGGAGGTTTCAATAACGGCGG
AAACTTCGTATCCTCGAGTGGTGTTGGCAACTTTGGCCCGATCGGCGGCG
GTCGCAACAATAACAACGGAAATTTCGGAAACTCTGGATTCGGTAACTTT
GGAGGAAACAACAATGTCGGCTCGAACTTCGGAGGAGGCAACAACGGCGG
TGGCGGCGGATTCAACAATGGCTCGAACTTCGGCGGCGGCAACTCAATGG
GCGGTGGTGGCAATTTCGGTCCCATCGGCGGCGGTCGGGGCAACGACATC
GAGTATTATACAATCCACATGCGCGGACTTCCCTACACTTCATTTGAAAA
CGACGTTTTTAAGTTCTTCGAACCAATCCGACCAGCTAACGTGCGGATAA
ACTACAACAAGAAGGGTCTGCACAGTGGCACTGCGGATGCCTACTTCGAC
ACCTACGAGGATTCCCAGGTGGCCATGAAGCGCCACAGAGAGCAGATGGG
TTCGCGATACATTGAGCTGTTCTACGACGGAAAGACGCGTGGACTCAATG
GTGGGGAACACGGCGGTGGTAACGGTGGCGGCGGAATGGGAAACAATGGC
GGCGGAAACTTTTCGCGGCGCATCTAAAAGCTTTCTAGACCAT
BS14687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-RA | 1761 | CG6946-PA | 1..1761 | 17..1777 | 8745 | 99.8 | Plus |
| glo-RB | 1761 | CG6946-PB | 1..1761 | 17..1777 | 8745 | 99.8 | Plus |
| glo-RC | 540 | CG6946-PC | 1..503 | 17..519 | 2470 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-RA | 2117 | CG6946-RA | 148..1909 | 17..1778 | 8750 | 99.8 | Plus |
| glo-RB | 2129 | CG6946-RB | 73..1834 | 17..1778 | 8750 | 99.8 | Plus |
| glo-RC | 2059 | CG6946-RC | 649..1764 | 663..1778 | 5565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11815841..11816549 | 1513..805 | 3515 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11818569..11818942 | 390..17 | 1810 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11815501..11815767 | 1778..1512 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 11816612..11816759 | 809..662 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11817192..11817339 | 665..518 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11818005..11818139 | 519..385 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:19:52 has no hits.
BS14687.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:23:13 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RA | 229..1997 | 17..1785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:36 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..1831 | 17..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:55 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RA | 229..1987 | 17..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:06 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..1831 | 17..1775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:06 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11815504..11815765 | 1514..1775 | 100 | <- | Minus |
| 3R | 11815841..11816544 | 810..1513 | 99 | <- | Minus |
| 3R | 11816612..11816757 | 664..809 | 100 | <- | Minus |
| 3R | 11817194..11817338 | 519..663 | 100 | <- | Minus |
| 3R | 11818006..11818137 | 387..518 | 100 | <- | Minus |
| 3R | 11818573..11818942 | 17..386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:36 Download gff for
BS14687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7641226..7641487 | 1514..1775 | 100 | <- | Minus |
| arm_3R | 7641563..7642266 | 810..1513 | 99 | <- | Minus |
| arm_3R | 7642334..7642479 | 664..809 | 100 | <- | Minus |
| arm_3R | 7642916..7643060 | 519..663 | 100 | <- | Minus |
| arm_3R | 7643728..7643859 | 387..518 | 100 | <- | Minus |
| arm_3R | 7644295..7644664 | 17..386 | 99 | | Minus |
BS14687.3prime Sequence
722 bp (699 high quality bases) assembled on 2006-10-13
> BS14687.3prime
ATGGTCTAGAAAGCTTTTAGATGCGCCGCGAAAAGTTTCCGCCGCCATTG
TTTCCCATTCCGCCGCCACCGTTACCACCGCCGTGTTCCCCACCATTGAG
TCCACGCGTCTTTCCGTCGTAGAACAGCTCAATGTATCGCGAACCCATCT
GCTCTCTGTGGCGCTTCATGGCCACCTGGGAATCCTCGTAGGTGTCGAAG
TAGGCATCCGCAGTGCCACTGTGCAGACCCTTCTTGTTGTAGTTTATCCG
CACGTTAGCTGGTCGGATTGGTTCGAAGAACTTAAAAACGTCGTTTTCAA
ATGAAGTGTAGGGAAGTCCGCGCATGTGGATTGTATAATACTCGATGTCG
TTGCCCCGACCGCCGCCGATGGGACCGAAATTGCCACCACCGCCCATTGA
GTTGCCGCCGCCGAAGTTCGAGCCATTGTTGAATCCGCCGCCACCGCCGT
TGTTGCCTCCTCCGAAGTTCGAGCCGACATTGTTGTTTCCTCCAAAGTTA
CCGAATCCAGAGTTTCCGAAATTTCCGTTGTTATTGTTGCGACCGCCGCC
GATCGGGCCAAAGTTGCCAACACCACTCGAGGATACGAAGTTTCCGCCGT
TATTGAAACCTCCTCCACCATTGCCGCCAAAATTGGAACCGCCATTGTTG
CCGAAATTATTAACGCCTCCTGGAGAATTGAAGTTGTTGCCACTGTTGAA
ACCCCCGCCGCCGTTGTTGTTG
BS14687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6946-PB | 1761 | CG6946-RB | 1056..1761 | 722..17 | 3455 | 99.5 | Minus |
| CG6946-PA | 1761 | CG6946-RA | 1056..1761 | 722..17 | 3455 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-RA | 2117 | CG6946-RA | 1203..1909 | 722..16 | 3490 | 99.6 | Minus |
| glo-RC | 2059 | CG6946-RC | 1058..1764 | 722..16 | 3490 | 99.6 | Minus |
| glo-RB | 2129 | CG6946-RB | 1128..1834 | 722..16 | 3490 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11815841..11816282 | 281..722 | 2165 | 99.3 | Plus |
| 3R | 32079331 | 3R | 11815501..11815767 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:24:37 has no hits.
BS14687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:18 Download gff for
BS14687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6946-PA | 1056..1761 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:25 Download gff for
BS14687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 1128..1841 | 9..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:20 Download gff for
BS14687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 1128..1841 | 9..722 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:20 Download gff for
BS14687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11815494..11815765 | 9..280 | 99 | <- | Plus |
| 3R | 11815841..11816282 | 281..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:25 Download gff for
BS14687.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7641216..7641487 | 9..280 | 99 | <- | Plus |
| arm_3R | 7641563..7642004 | 281..722 | 99 | | Plus |
BS14687.5prime Sequence
730 bp (693 high quality bases) assembled on 2006-10-13
> BS14687.5prime
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTC
BS14687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6946-PB | 1761 | CG6946-RB | 1..714 | 17..730 | 3495 | 99.5 | Plus |
| CG6946-PA | 1761 | CG6946-RA | 1..714 | 17..730 | 3495 | 99.5 | Plus |
| CG6946-PC | 540 | CG6946-RC | 1..503 | 17..519 | 2440 | 99.4 | Plus |
| CG6946-PC | 540 | CG6946-RC | 502..540 | 663..701 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-RA | 2117 | CG6946-RA | 148..861 | 17..730 | 3525 | 99.6 | Plus |
| glo-RB | 2129 | CG6946-RB | 73..786 | 17..730 | 3525 | 99.6 | Plus |
| glo-RC | 2059 | CG6946-RC | 148..650 | 17..519 | 2470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11818569..11818942 | 390..17 | 1810 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11817192..11817339 | 665..518 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11818005..11818139 | 519..385 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 11816691..11816759 | 730..662 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:50:16 has no hits.
BS14687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:18 Download gff for
BS14687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6946-PA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:29 Download gff for
BS14687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..786 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:09 Download gff for
BS14687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..786 | 17..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:09 Download gff for
BS14687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11816691..11816757 | 664..730 | 100 | <- | Minus |
| 3R | 11817194..11817338 | 519..663 | 100 | <- | Minus |
| 3R | 11818006..11818137 | 387..518 | 100 | <- | Minus |
| 3R | 11818573..11818942 | 17..386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:29 Download gff for
BS14687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7642413..7642479 | 664..730 | 100 | <- | Minus |
| arm_3R | 7642916..7643060 | 519..663 | 100 | <- | Minus |
| arm_3R | 7643728..7643859 | 387..518 | 100 | <- | Minus |
| arm_3R | 7644295..7644664 | 17..386 | 99 | | Minus |
BS14687.pep Sequence
Translation from 16 to 1776
> BS14687.pep
MSNADVQFNYGQQGNGDNFNDDSNQQQDEDDQYNEDGGGKIENVGESPKF
VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEV
ASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKL
RGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQD
DTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAGGGVGGRPGPYDIRDR
GANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGG
NNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNF
GGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSS
SGVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFN
NGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFENDVFKF
FEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIE
LFYDGKTRGLNGGEHGGGNGGGGMGNNGGGNFSRRI*
BS14687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-PA | 586 | CG6946-PA | 1..586 | 1..586 | 3201 | 100 | Plus |
| glo-PB | 586 | CG6946-PB | 1..586 | 1..586 | 3201 | 100 | Plus |
| glo-PC | 179 | CG6946-PC | 1..169 | 1..169 | 877 | 99.4 | Plus |
| Hrb98DE-PA | 364 | CG9983-PA | 2..361 | 14..459 | 342 | 28.2 | Plus |
| Hrb98DE-PE | 360 | CG9983-PE | 2..357 | 14..459 | 338 | 28.1 | Plus |
| Hrb98DE-PA | 364 | CG9983-PA | 206..350 | 318..472 | 287 | 46.7 | Plus |
| Hrb98DE-PA | 364 | CG9983-PA | 201..317 | 353..489 | 198 | 41.4 | Plus |
| glo-PC | 179 | CG6946-PC | 51..143 | 148..239 | 172 | 39.8 | Plus |
