Clone Sequence Records
BS14689.complete Sequence
1826 bp assembled on 2009-12-07
GenBank Submission: KX801481
> BS14689.complete
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCGAAGTTCAAGGAGTTGAACGATGAGTTCCGA
AACATGGAGGAGAAATCCCGGAAAAACCTGCAGCATAAATTGCAAATGCT
GTCCGCTCTAAAGAAACCGGCAGGTACATCGATTGCTAATTTCAATAAGC
CCAAGGAGGCGGCTCCAACGACGAATCTGAAGCGATATGTTCGGGAAACT
CAGAGCATGATGATTCTAAAACTGGAGCTAAAGGCTGTGGAAAAGACAAT
CAAGGAGGTTAAGTTTGTGACACTCTGTTCGCAGGCCAAGGAAATTTATC
CACGAATGAAGAGCCAGGTGGACAACAATGATAAACTGCATCGTATGATT
GTCAATGACATGTTGGCTCATGAAATGCTGGAAACCAAGATGAAGTGCGC
CAGTGTCTTGAAAGGGGTGCTGATCAACAATCTGTCAGAGGAAGAGATTA
ATCGCTTGGAGCGCATTAAGGACCTAAAGAAAACGCTTCAAAATGACATC
CAATTTGAACAAGATACTTTGCAACATCTTAAGAACAGAGCTGATGCATA
TGTATTGTTGAGAGTTAGCATTTGGAATCTTTTGGAGATCCTTCGTCACA
TTGATCGCCAGCCCAAATTACTACGTGCGCAGTATCCCAACTCGTACTTG
AAGCTCCCGTTGCTAAAATTCGAAATGCTGAACATGAGGGCTGCTGCCCC
AGAGATTTTCGAGGAGAATATTGATAACATAATGCATATGGTGAAGCGTA
AGATCTACAAGCTGATGAAGGCTTATGCAGTTGAGCTCAAACCGGCGACC
ATCAAGCGAAATGTCGAGGAATACCATGCCGACTTCCTGGCCAGCCTAGA
TATGTACGAGCCAGTGGATAATGAAGAGCAGGCTCCAACAGCTCCCGAGG
ATGACATCCTGCAGGAGAACAAGACCATGGCCAATGTACCCAACCGCAAA
CAAATCAAGGCCCAAAGTGCCAAGCTTGTGGAGGAGCTGGCCAAGCGGGA
TGAAATGTAAAAGCTTTCTAGACCAT
BS14689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 1794 | CG14609-PB | 1..1794 | 17..1810 | 8955 | 99.9 | Plus |
CG14609-RA | 1794 | CG14609-PA | 1..1794 | 17..1810 | 8955 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 123..1919 | 15..1811 | 8970 | 99.9 | Plus |
CG14609-RA | 1993 | CG14609-RA | 123..1919 | 15..1811 | 8970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7201758..7202318 | 544..1104 | 2790 | 99.8 | Plus |
3R | 32079331 | 3R | 7201375..7201682 | 237..544 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 7202998..7203288 | 1521..1811 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 7201092..7201313 | 15..236 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 7202781..7202940 | 1361..1520 | 800 | 100 | Plus |
3R | 32079331 | 3R | 7202380..7202527 | 1104..1251 | 740 | 100 | Plus |
3R | 32079331 | 3R | 7202580..7202694 | 1248..1362 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:57:35 has no hits.
BS14689.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:35 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1916 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:12 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1916 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:31 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1916 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:39 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1916 | 17..1808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:39 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7202584..7202694 | 1252..1362 | 100 | -> | Plus |
3R | 7202783..7202940 | 1363..1520 | 100 | -> | Plus |
3R | 7201094..7201313 | 17..236 | 100 | -> | Plus |
3R | 7201375..7201682 | 237..544 | 100 | -> | Plus |
3R | 7201759..7202318 | 545..1104 | 99 | -> | Plus |
3R | 7202381..7202527 | 1105..1251 | 100 | -> | Plus |
3R | 7202998..7203285 | 1521..1808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:12 Download gff for
BS14689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3028103..3028249 | 1105..1251 | 100 | -> | Plus |
arm_3R | 3028306..3028416 | 1252..1362 | 100 | -> | Plus |
arm_3R | 3026816..3027035 | 17..236 | 100 | -> | Plus |
arm_3R | 3027097..3027404 | 237..544 | 100 | -> | Plus |
arm_3R | 3028505..3028662 | 1363..1520 | 100 | -> | Plus |
arm_3R | 3027481..3028040 | 545..1104 | 99 | -> | Plus |
arm_3R | 3028720..3029007 | 1521..1808 | 100 | | Plus |
BS14689.3prime Sequence
745 bp (737 high quality bases) assembled on 2006-10-13
> BS14689.3prime
ATGGTCTAGAAAGCTTTTACATTTCATCCCGCTTGGCCAGCTCCTCCACA
AGCTTGGCACTTTGGGCCTTGATTTGTTTGCGGTTGGGTACATTGGCCAT
GGTCTTGTTCTCCTGCAGGATGTCATCCTCGGGAGCTGTTGGAGCCTGCT
CTTCATTATCCACTGGCTCGTACATATCTAGGCTGGCCAGGAAGTCGGCA
TGGTATTCCTCGACATTTCGCTTGATGGTCGCCGGTTTGAGCTCAACTGC
ATAAGCCTTCATCAGCTTGTAGATCTTACGCTTCACCATATGCATTATGT
TATCAATATTCTCCTCGAAAATCTCTGGGGCAGCAGCCCTCATGTTCAGC
ATTTCGAATTTTAGCAACGGGAGCTTCAAGTACGAGTTGGGATACTGCGC
ACGTAGTAATTTGGGCTGGCGATCAATGTGACGAAGGATCTCCAAAAGAT
TCCAAATGCTAACTCTCAACAATACATATGCATCAGCTCTGTTCTTAAGA
TGTTGCAAAGTATCTTGTTCAAATTGGATGTCATTTTGAAGCGTTTTCTT
TAGGTCCTTAATGCGCTCCAAGCGATTAATCTCTTCCTCTGACAGATTGT
TGATCAGCACCCCTTTCAAGACACTGGCGCACTTCATCTTGGTTTCCAGC
ATTTCATGAGCCAACATGTCATTGACAATCATACGATGCAGTTTATCATT
GTTGTCCACCTGGCTCTTCATTCGTGGATAAATTTCCTTGGCCTG
BS14689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PA | 1794 | CG14609-RA | 1066..1794 | 745..17 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 1190..1919 | 745..16 | 3650 | 100 | Minus |
CG14609-RA | 1993 | CG14609-RA | 1190..1919 | 745..16 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7202998..7203288 | 306..16 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 7202781..7202940 | 466..307 | 800 | 100 | Minus |
3R | 32079331 | 3R | 7202380..7202527 | 723..576 | 740 | 100 | Minus |
3R | 32079331 | 3R | 7202580..7202694 | 579..465 | 560 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:38:37 has no hits.
BS14689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:21 Download gff for
BS14689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1066..1794 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:46:33 Download gff for
BS14689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 1190..1924 | 10..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:31 Download gff for
BS14689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 1190..1924 | 10..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:31 Download gff for
BS14689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7202296..7202318 | 723..745 | 100 | -> | Minus |
3R | 7202381..7202527 | 576..722 | 100 | -> | Minus |
3R | 7202584..7202694 | 465..575 | 100 | -> | Minus |
3R | 7202783..7202940 | 307..464 | 100 | -> | Minus |
3R | 7202998..7203293 | 10..306 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:46:33 Download gff for
BS14689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3028018..3028040 | 723..745 | 100 | -> | Minus |
arm_3R | 3028103..3028249 | 576..722 | 100 | -> | Minus |
arm_3R | 3028306..3028416 | 465..575 | 100 | -> | Minus |
arm_3R | 3028505..3028662 | 307..464 | 100 | -> | Minus |
arm_3R | 3028720..3029015 | 10..306 | 99 | | Minus |
BS14689.5prime Sequence
820 bp (745 high quality bases) assembled on 2006-10-13
> BS14689.5prime
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCG
BS14689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PA | 1794 | CG14609-RA | 1..804 | 17..820 | 3995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 123..928 | 15..820 | 4015 | 99.9 | Plus |
CG14609-RA | 1993 | CG14609-RA | 123..928 | 15..820 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7201375..7201682 | 237..544 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 7201758..7202034 | 544..820 | 1370 | 99.6 | Plus |
3R | 32079331 | 3R | 7201092..7201313 | 15..236 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:30:41 has no hits.
BS14689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:21 Download gff for
BS14689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:17 Download gff for
BS14689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 117..928 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:30 Download gff for
BS14689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 117..928 | 9..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:30 Download gff for
BS14689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7201086..7201313 | 9..236 | 99 | -> | Plus |
3R | 7201759..7202034 | 545..820 | 99 | | Plus |
3R | 7201375..7201682 | 237..544 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:17 Download gff for
BS14689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3026808..3027035 | 9..236 | 99 | -> | Plus |
arm_3R | 3027097..3027404 | 237..544 | 100 | -> | Plus |
arm_3R | 3027481..3027756 | 545..820 | 99 | | Plus |
BS14689.pep Sequence
Translation from 16 to 1809
> BS14689.pep
MPPCTLRQRGMAYIPRRDKNREKDVLAPKPVHPRSLRFHGFFGMSYVHQH
VMVDERWTPNSLTEQFKGMTDLLTRRLVFKNHESKANRQRYFRENKRLKL
QCRDGRAKLQNILINDNTHKIRNFLINHKPLQRLYQKMPIHLVVDNINQR
TFVMRKERDRLEFRLDQLKQHYKEQLLRRALLQNRIKYQNEFILDEELKS
RVFLKKIENSNVRLKAIKTINNTYKKMIQVLVHDEIFYEPILRSLSSDMD
DQSNFIKHILFLGMPAIAKFKELNDEFRNMEEKSRKNLQHKLQMLSALKK
PAGTSIANFNKPKEAAPTTNLKRYVRETQSMMILKLELKAVEKTIKEVKF
VTLCSQAKEIYPRMKSQVDNNDKLHRMIVNDMLAHEMLETKMKCASVLKG
VLINNLSEEEINRLERIKDLKKTLQNDIQFEQDTLQHLKNRADAYVLLRV
SIWNLLEILRHIDRQPKLLRAQYPNSYLKLPLLKFEMLNMRAAAPEIFEE
NIDNIMHMVKRKIYKLMKAYAVELKPATIKRNVEEYHADFLASLDMYEPV
DNEEQAPTAPEDDILQENKTMANVPNRKQIKAQSAKLVEELAKRDEM*
BS14689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PB | 597 | CG14609-PB | 1..597 | 1..597 | 3059 | 100 | Plus |
CG14609-PA | 597 | CG14609-PA | 1..597 | 1..597 | 3059 | 100 | Plus |