Clone Sequence Records
BS14691.3prime Sequence
720 bp (716 high quality bases) assembled on 2006-10-13
> BS14691.3prime
ATGGTCTAGAAAGCTTTTAGGTACTTTGTCTTTTTCCAAAGTTCCCCTTC
TTCACTGTGCTAACGTCACTCACACGAGGCGACTCAAAGTAGTCCACCTT
TCGTATGTTAGACACTATCTTGAAGTAATTGGCAATGATCTTGTCCACTT
CTTGTCCCTCATATGCGGTGGCCAATTCCTTTTCACATCGTGAGACTACG
TTCGTGAGCAGACCTCCGGACCGAAAGAACGCTATGTTGATCTCCCGTTT
GACCCACTTGCAGATATGTGAATGGGTGACTGGCTCGAAAAAGTGAAAGA
TCTCGTAAAAGTGCTCGTAACTCTCCCCAAATTTTCGCATTTCAAGTTCA
CCCAACTTGGGAATGTCCAGGTGGTTTCGTCTGATGATATGATATGGGTC
GTATTGCTCCGAAAAGTTTGAGAACCGAACTGCTGGCCAGTCGAGGTTCA
GAAGGGTGTTGTAGAGATTCTTCGGGTGGCCAAGGATTCCATGGGACAGA
TCAATCAAGCGGAGCTGCGATCCGGGCACAACGTACTCCAACTCGATCTG
AGCGATGTGAGGATCAGTGCCCCTATACTTACGCTTTCCTATCCACAGAA
TGGGCAAATCCTCCGTCACAACATGCTCCAACTCTTGGACCAGCGGAGAG
ATCTGGACGCGATAATTGAGGTTCTTGTTGTTTCGGCCGTAAAGAAGACT
TCGCTCCGCCTCCGTGAACT
BS14691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 1443 | CG31391-RA | 740..1443 | 720..17 | 3495 | 99.8 | Minus |
CG31467-PA | 1443 | CG31467-RA | 1195..1289 | 265..171 | 300 | 92.6 | Minus |
CG31467-PA | 1443 | CG31467-RA | 740..800 | 720..660 | 155 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 826..1531 | 720..15 | 3515 | 99.9 | Minus |
CG31467-RA | 1694 | CG31467-RA | 869..1496 | 720..93 | 860 | 76.2 | Minus |
CG14689-RA | 1661 | CG14689-RA | 853..1153 | 710..410 | 395 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10703545..10704250 | 15..720 | 3515 | 99.9 | Plus |
3R | 32079331 | 3R | 10705368..10705995 | 93..720 | 845 | 75.6 | Plus |
3R | 32079331 | 3R | 10710096..10710396 | 410..710 | 395 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:21 has no hits.
BS14691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:22 Download gff for
BS14691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 740..1443 | 17..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:13 Download gff for
BS14691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 826..1531 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:43 Download gff for
BS14691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 826..1531 | 15..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:43 Download gff for
BS14691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10703545..10704250 | 15..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:13 Download gff for
BS14691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529267..6529972 | 15..720 | 99 | | Plus |
BS14691.5prime Sequence
859 bp (695 high quality bases) assembled on 2006-10-13
> BS14691.5prime
GAAGTTATCAGTCGACATGAAAAGAGTCCATGTCGATAACTACGCTCCAA
AGTACTACAGCGGCAAGTGGTCATGGGACTCGGAGAAGGACTGCCTCAAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATAATCAC
CAATGGGTACAAGTTCCTGCGTACCATCGACCAAGAGGAGGAGCTTATCT
TCCGGCAGGAGTATGTACGCGCCAAGTCCAACACCAGTGACACAGTGGTG
CTAAGAGATATTCGAGATCTGGTGCTCTACTTGATGCCTAAAGACTTTCT
AACCTACAAGTTCATTGAATTCATGCATGAGCCACAGGTGCAGTCCGTGC
TCCACGCCTTAACATTGTACTTTGAGTACTACCTACGCCTGGTGGAGTTC
GTCCTGATTCGCAGAGATGAACTCTCTGGCCAGATGGCCCAAATTCAGAG
CGAGCAGACCACTGAGATGAAGAAAACCTATTCCGTTTACCTGAGCCACT
TCCGCATGCTATTAGCCCGAAACTACTGTGAGATTATCAAGGGCGAGGGA
TCTATGGCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
TATCCACGATAAGTACTTCCATGAGCATTTTCTGGCAGTATCCATCCAAA
TAGTCTGGATATGCATGCATCGCCGAGCGTATTTCGTCATCGAAATGGAG
ATGAATCGGCTTTTCCGGTCGGAGCACTTTGTTTCCGTCCGCCCTGAGTA
CCTTGAGTTCACGGAGGCGGAGCGAAGTCTTCTTTACGGCCGAAACAACA
AGAACCTCAATTATCGCGTCCAGATCTCTCCGCTGGTCCAGAATTGGAGC
ATGTTGTGA
BS14691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 1443 | CG31391-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
CG31467-PA | 1443 | CG31467-RA | 542..800 | 558..816 | 670 | 90.3 | Plus |
CG31467-PA | 1443 | CG31467-RA | 13..200 | 29..216 | 565 | 92 | Plus |
CG14689-PA | 1464 | CG14689-RA | 132..193 | 148..209 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 87..930 | 17..859 | 4180 | 99.8 | Plus |
CG31467-RA | 1694 | CG31467-RA | 142..929 | 29..816 | 1750 | 81.6 | Plus |
CG14689-RA | 1661 | CG14689-RA | 109..939 | 16..851 | 655 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10704146..10704989 | 859..17 | 4155 | 99.8 | Minus |
3R | 32079331 | 3R | 10705935..10706722 | 816..29 | 1750 | 81.5 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 475 | 83 | Minus |
3R | 32079331 | 3R | 10710321..10710716 | 841..446 | 315 | 72 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:17:31 has no hits.
BS14691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:23 Download gff for
BS14691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 1..843 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:18 Download gff for
BS14691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..929 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:28 Download gff for
BS14691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..929 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:28 Download gff for
BS14691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10704147..10704989 | 17..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:18 Download gff for
BS14691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529869..6530711 | 17..858 | 99 | | Minus |
BS14691.complete Sequence
1475 bp assembled on 2006-11-01
GenBank Submission: FJ637761
> BS14691.complete
GAAGTTATCAGTCGACATGAAAAGAGTCCATGTCGATAACTACGCTCCAA
AGTACTACAGCGGCAAGTGGTCATGGGACTCGGAGAAGGACTGCCTCAAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATAATCAC
CAATGGGTACAAGTTCCTGCGTACCATCGACCAAGAGGAGGAGCTTATCT
TCCGGCAGGAGTATGTACGCGCCAAGTCCAACACCAGTGACACAGTGGTG
CTAAGAGATATTCGAGATCTGGTGCTCTACTTGATGCCTAAAGACTTTCT
AACCTACAAGTTCATTGAATTCATGCATGAGCCACAGGTGCAGTCCGTGC
TCCACGCCTTAACATTGTACTTTGAGTACTACCTACGCCTGGTGGAGTTC
GTCCTGATTCGCAGAGATGAACTCTCTGGCCAGATGGCCCAAATTCAGAG
CGAGCAGACCACTGAGATGAAGAAAACCTATTCCGTTTACCTGAGCCACT
TCCGCATGCTATTAGCCCGAAACTACTGTGAGATTATCAAGGGCGAGGGA
TCTATGGCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
TATCCACGATAAGTACTTCCATGAGCATTTTCTGGCAGTATCCATCCAAA
TAGTCTGGATATGCATGCATCGCCGAGCGTATTTCGTCATCGAAATGGAG
ATGAATCGGCTTTTCCGGTCGGAGCACTTTGTTTCCGTCCGCCCTGAGTA
CCTTGAGTTCACGGAGGCGGAGCGAAGTCTTCTTTACGGCCGAAACAACA
AGAACCTCAATTATCGCGTCCAGATCTCTCCGCTGGTCCAAGAGTTGGAG
CATGTTGTGACGGAGGATTTGCCCATTCTGTGGATAGGAAAGCGTAAGTA
TAGGGGCACTGATCCTCACATCGCTCAGATCGAGTTGGAGTACGTTGTGC
CCGGATCGCAGCTCCGCTTGATTGATCTGTCCCATGGAATCCTTGGCCAC
CCGAAGAATCTCTACAACACCCTTCTGAACCTCGACTGGCCAGCAGTTCG
GTTCTCAAACTTTTCGGAGCAATACGACCCATATCATATCATCAGACGAA
ACCACCTGGACATTCCCAAGTTGGGTGAACTTGAAATGCGAAAATTTGGG
GAGAGTTACGAGCACTTTTACGAGATCTTTCACTTTTTCGAGCCAGTCAC
CCATTCACATATCTGCAAGTGGGTCAAACGGGAGATCAACATAGCGTTCT
TTCGGTCCGGAGGTCTGCTCACGAACGTAGTCTCACGATGTGAAAAGGAA
TTGGCCACCGCATATGAGGGACAAGAAGTGGACAAGATCATTGCCAATTA
CTTCAAGATAGTGTCTAACATACGAAAGGTGGACTACTTTGAGTCGCCTC
GTGTGAGTGACGTTAGCACAGTGAAGAAGGGGAACTTTGGAAAAAGACAA
AGTACCTAAAAGCTTTCTAGACCAT
BS14691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1443 | CG31391-PA | 1..1443 | 17..1459 | 7200 | 99.9 | Plus |
CG31467-RA | 1443 | CG31467-PA | 13..1367 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1464 | CG14689-PA | 424..1044 | 446..1066 | 600 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 87..1531 | 17..1461 | 7210 | 99.9 | Plus |
CG31467-RA | 1694 | CG31467-RA | 142..1496 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1661 | CG14689-RA | 533..1153 | 446..1066 | 600 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10703545..10704989 | 1461..17 | 7210 | 99.9 | Minus |
3R | 32079331 | 3R | 10705368..10706722 | 1383..29 | 2380 | 78.4 | Minus |
3R | 32079331 | 3R | 10710096..10710716 | 1066..446 | 600 | 73.1 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 475 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:29 has no hits.
BS14691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:30 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 1..1443 | 17..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:25 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1531 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:56 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1527 | 17..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:30 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1531 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:02 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1527 | 17..1457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:02 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10703549..10704989 | 17..1457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:56 Download gff for
BS14691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529271..6530711 | 17..1457 | 99 | | Minus |
BS14691.pep Sequence
Translation from 16 to 1458
> BS14691.pep
MKRVHVDNYAPKYYSGKWSWDSEKDCLNFQAHNDLENARERYIITNGYKF
LRTIDQEEELIFRQEYVRAKSNTSDTVVLRDIRDLVLYLMPKDFLTYKFI
EFMHEPQVQSVLHALTLYFEYYLRLVEFVLIRRDELSGQMAQIQSEQTTE
MKKTYSVYLSHFRMLLARNYCEIIKGEGSMAKYYHMKPISNISATIHDKY
FHEHFLAVSIQIVWICMHRRAYFVIEMEMNRLFRSEHFVSVRPEYLEFTE
AERSLLYGRNNKNLNYRVQISPLVQELEHVVTEDLPILWIGKRKYRGTDP
HIAQIELEYVVPGSQLRLIDLSHGILGHPKNLYNTLLNLDWPAVRFSNFS
EQYDPYHIIRRNHLDIPKLGELEMRKFGESYEHFYEIFHFFEPVTHSHIC
KWVKREINIAFFRSGGLLTNVVSRCEKELATAYEGQEVDKIIANYFKIVS
NIRKVDYFESPRVSDVSTVKKGNFGKRQST*
BS14691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 480 | CG31391-PA | 1..480 | 1..480 | 2538 | 100 | Plus |
CG31467-PA | 480 | CG31467-PA | 1..456 | 1..456 | 1944 | 78.5 | Plus |
CG14689-PA | 487 | CG14689-PA | 1..477 | 1..478 | 1723 | 67.7 | Plus |