Clone BS14692 Report

Search the DGRC for BS14692

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5968-RA
Protein status:BS14692.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14692.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS14692.3prime
ATGGTCTAGAAAGCTTTTACTTAAAAACTGTTCGCTTAATCAGCTTGGAT
GGCGTTTTTCTTATGTTTGTGGATGAACTAGGAATGTCCTGCAGTCGGCC
CTTTTCAGTTGGTTTTGACTTTACCAACTGTTCCGTTGTCTTGACTTGAC
TTGGCTTCTTATTAATTTTTTTCTCAGCGACCGACGATAAAGGAGTCTTG
GGTATTAATTTCTTTTTCTTTTTAAGTGACTTCTCCGGAGATTCTTCTTT
GTCAAGGGCCTCCATCTCAGACATCAATGTCTCGAAGGTCACATTCATCA
AAAAGTAGCGACCGTCGAGTTTCTGCAGGAATCCCAAGCGATGGCCCATT
TCAAGGGTTTGTTTCACAGGCTCTTTAAGCTCATCTTGCGATAATTCCGT
ATTTTTGGCTATGGTTACCACTATTTCTCGCAGTGTCGCCGGCGCTTTCA
ACAACTGAAGTGTGTGCACTATAATAGCCCCATTAAAGTTGGGCATGTCG
ACTGATAACT

BS14692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-PA 480 CG5968-RA 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-RB 723 CG5968-RB 74..553 496..17 2400 100 Minus
CG5968-RA 581 CG5968-RA 74..553 496..17 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16549351..16549647 17..313 1485 100 Plus
2L 23513712 2L 16549701..16549886 311..496 930 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:15:40 has no hits.

BS14692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:23 Download gff for BS14692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:15 Download gff for BS14692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 13..496 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:07 Download gff for BS14692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 13..496 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:07 Download gff for BS14692.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16549349..16549646 13..312 99 <- Plus
2L 16549703..16549886 313..496 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:15 Download gff for BS14692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16549349..16549646 13..312 99 <- Plus
arm_2L 16549703..16549886 313..496 100   Plus

BS14692.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS14692.5prime
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGTAAAAGC
TTTCTAGACC

BS14692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-PA 480 CG5968-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-RB 723 CG5968-RB 74..553 17..496 2400 100 Plus
CG5968-RA 581 CG5968-RA 74..553 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16549351..16549647 496..200 1485 100 Minus
2L 23513712 2L 16549701..16549886 202..17 930 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:12:27 has no hits.

BS14692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:24 Download gff for BS14692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:31 Download gff for BS14692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 17..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:12 Download gff for BS14692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 17..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:12 Download gff for BS14692.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16549349..16549646 201..500 99 <- Minus
2L 16549703..16549886 17..200 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:31 Download gff for BS14692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16549349..16549646 201..500 99 <- Minus
arm_2L 16549703..16549886 17..200 100   Minus

BS14692.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637762

> BS14692.complete
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGTAAAAGC
TTTCTAGACCAT

BS14692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-RB 480 CG5968-PB 1..480 17..496 2400 100 Plus
CG5968-RA 480 CG5968-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-RB 723 CG5968-RB 74..553 17..496 2400 100 Plus
CG5968-RA 581 CG5968-RA 74..553 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16549351..16549647 496..200 1485 100 Minus
2L 23513712 2L 16549701..16549886 202..17 930 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:17:38 has no hits.

BS14692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:31 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:26 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..551 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:31 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..555 17..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:24 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5968-RA 74..551 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:24 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16549353..16549646 201..494 100 <- Minus
2L 16549703..16549886 17..200 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for BS14692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16549353..16549646 201..494 100 <- Minus
arm_2L 16549703..16549886 17..200 100   Minus

BS14692.pep Sequence

Translation from 16 to 495

> BS14692.pep
MPNFNGAIIVHTLQLLKAPATLREIVVTIAKNTELSQDELKEPVKQTLEM
GHRLGFLQKLDGRYFLMNVTFETLMSEMEALDKEESPEKSLKKKKKLIPK
TPLSSVAEKKINKKPSQVKTTEQLVKSKPTEKGRLQDIPSSSTNIRKTPS
KLIKRTVFK*

BS14692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5968-PB 159 CG5968-PB 1..159 1..159 788 100 Plus
CG5968-PA 159 CG5968-PA 1..159 1..159 788 100 Plus