Clone Sequence Records
BS14692.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS14692.3prime
ATGGTCTAGAAAGCTTTTACTTAAAAACTGTTCGCTTAATCAGCTTGGAT
GGCGTTTTTCTTATGTTTGTGGATGAACTAGGAATGTCCTGCAGTCGGCC
CTTTTCAGTTGGTTTTGACTTTACCAACTGTTCCGTTGTCTTGACTTGAC
TTGGCTTCTTATTAATTTTTTTCTCAGCGACCGACGATAAAGGAGTCTTG
GGTATTAATTTCTTTTTCTTTTTAAGTGACTTCTCCGGAGATTCTTCTTT
GTCAAGGGCCTCCATCTCAGACATCAATGTCTCGAAGGTCACATTCATCA
AAAAGTAGCGACCGTCGAGTTTCTGCAGGAATCCCAAGCGATGGCCCATT
TCAAGGGTTTGTTTCACAGGCTCTTTAAGCTCATCTTGCGATAATTCCGT
ATTTTTGGCTATGGTTACCACTATTTCTCGCAGTGTCGCCGGCGCTTTCA
ACAACTGAAGTGTGTGCACTATAATAGCCCCATTAAAGTTGGGCATGTCG
ACTGATAACT
BS14692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-PA | 480 | CG5968-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-RB | 723 | CG5968-RB | 74..553 | 496..17 | 2400 | 100 | Minus |
CG5968-RA | 581 | CG5968-RA | 74..553 | 496..17 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16549351..16549647 | 17..313 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 16549701..16549886 | 311..496 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:40 has no hits.
BS14692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:23 Download gff for
BS14692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:15 Download gff for
BS14692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 13..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:07 Download gff for
BS14692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 13..496 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:07 Download gff for
BS14692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16549349..16549646 | 13..312 | 99 | <- | Plus |
2L | 16549703..16549886 | 313..496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:15 Download gff for
BS14692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16549349..16549646 | 13..312 | 99 | <- | Plus |
arm_2L | 16549703..16549886 | 313..496 | 100 | | Plus |
BS14692.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS14692.5prime
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGTAAAAGC
TTTCTAGACC
BS14692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-PA | 480 | CG5968-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-RB | 723 | CG5968-RB | 74..553 | 17..496 | 2400 | 100 | Plus |
CG5968-RA | 581 | CG5968-RA | 74..553 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16549351..16549647 | 496..200 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 16549701..16549886 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:27 has no hits.
BS14692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:24 Download gff for
BS14692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:31 Download gff for
BS14692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:12 Download gff for
BS14692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 17..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:12 Download gff for
BS14692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16549349..16549646 | 201..500 | 99 | <- | Minus |
2L | 16549703..16549886 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:31 Download gff for
BS14692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16549349..16549646 | 201..500 | 99 | <- | Minus |
arm_2L | 16549703..16549886 | 17..200 | 100 | | Minus |
BS14692.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637762
> BS14692.complete
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGTAAAAGC
TTTCTAGACCAT
BS14692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-RB | 480 | CG5968-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG5968-RA | 480 | CG5968-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-RB | 723 | CG5968-RB | 74..553 | 17..496 | 2400 | 100 | Plus |
CG5968-RA | 581 | CG5968-RA | 74..553 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16549351..16549647 | 496..200 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 16549701..16549886 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:17:38 has no hits.
BS14692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:31 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:26 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..551 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:31 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..555 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:24 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5968-RA | 74..551 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:24 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16549353..16549646 | 201..494 | 100 | <- | Minus |
2L | 16549703..16549886 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for
BS14692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16549353..16549646 | 201..494 | 100 | <- | Minus |
arm_2L | 16549703..16549886 | 17..200 | 100 | | Minus |
BS14692.pep Sequence
Translation from 16 to 495
> BS14692.pep
MPNFNGAIIVHTLQLLKAPATLREIVVTIAKNTELSQDELKEPVKQTLEM
GHRLGFLQKLDGRYFLMNVTFETLMSEMEALDKEESPEKSLKKKKKLIPK
TPLSSVAEKKINKKPSQVKTTEQLVKSKPTEKGRLQDIPSSSTNIRKTPS
KLIKRTVFK*
BS14692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5968-PB | 159 | CG5968-PB | 1..159 | 1..159 | 788 | 100 | Plus |
CG5968-PA | 159 | CG5968-PA | 1..159 | 1..159 | 788 | 100 | Plus |