Clone Sequence Records
BS14694.complete Sequence
1583 bp assembled on 2009-12-07
GenBank Submission: KX802623
> BS14694.complete
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCAT
TGTGCTGCGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCATGA
TGACTGAGCGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTG
GAGAGGCAGGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCAC
CCAAATGGACGGCAGCGACGTTTTCGACACCGTGCTGTGGGCCATTGGGC
GCAAAGGTCTCATCGAGGACCTCAACCTGGACGCCGCCGGAGTGAAGACT
CATGACGACAAGATTGTGGTAGACGCCGCGGAGGCCACCAGCGTGCCTCA
TATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACGCCGG
TGGCCATCCTGTCGGGCCGCCTGCTTGCCAGGCGTCTGTTCGCCGGCTCC
ACGCAGCTGATGGACTATGCCGACGTGGCAACCACAGTTTTTACTCCGCT
AGAATACAGTTGCGTCGGCATGTCGGAGGAAACGGCCATCGAACTGCGTG
GTGCTGACAACATCGAGGTCTTCCACGGCTACTACAAGCCCACAGAGTTC
TTTATTCCCCAGAAGAGCGTGCGTCACTGCTACCTCAAGGCCGTAGCCGA
AGTGTCCGGGGACCAGAAGATCCTTGGCCTGCACTACATCGGCCCAGTCG
CCGGCGAGGTCATCCAGGGCTTCGCCGCAGCCCTCAAGACCGGCTTGACC
GTAAAGACGCTTCTGAACACGGTGGGAATCCACCCCACCACCGCCGAAGA
GTTCACCCGGCTGTCAATCACCAAGCGATCTGGTCGGGATCCTACACCAG
CCTCCTGTTGCAGTTAGAAGCTTTCTAGACCAT
BS14694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1551 | CG11401-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Trxr-1-RC | 1527 | CG2151-PC | 520..1523 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RB | 1791 | CG2151-PB | 784..1787 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RC | 1527 | CG2151-PC | 72..426 | 106..460 | 715 | 81.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 96..1646 | 17..1567 | 7755 | 100 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 762..1765 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 931..1934 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 106..460 | 715 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22550321..22551871 | 17..1567 | 7755 | 100 | Plus |
X | 23542271 | X | 8246819..8247690 | 692..1563 | 835 | 73.1 | Plus |
X | 23542271 | X | 8246098..8246439 | 106..447 | 680 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:31 has no hits.
BS14694.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:19 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1646 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:45 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1646 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:48 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1646 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:41 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1646 | 17..1567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:41 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22550321..22551871 | 17..1567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:45 Download gff for
BS14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22543421..22544971 | 17..1567 | 100 | | Plus |
BS14694.3prime Sequence
631 bp (561 high quality bases) assembled on 2006-10-13
> BS14694.3prime
ATGGTCTAGAAAGCTTCTAACTGCAACAGGAGGCTGGTGTAGGATCCCGA
CCAGATCGCTTGGTGATTGACAGCCGGGTGAACTCTTCGGCGGTGGTGGG
GTGGATTCCCACCGTGTTCAGAAGCGTCTTTACGGTCAAGCCGGTCTTGA
GGGCTGCGGCGAAGCCCTGGATGACCTCGCCGGCGACTGGGCCGATGTAG
TGCAGGCCAAGGATCTTCTGGTCCCCGGACACTTCGGCTACGGCCTTGAG
GTAGCAGTGACGCACGCTCTTCTGGGGAATAAAGAACTCTGTGGGCTTGT
AGTAGCCGTGGAAGACCTCGATGTTGTCAGCACCACGCAGTTCGATGGCC
GTTTCCTCCGACATGCCGACGCAACTGTATTCTAGCGGAGTAAAAACTGT
GGTTGCCACGTCGGCATAGTCCATCAGCTGCGTGGAGCCGGCGAACAGAC
GCCTGGCAAGCAGGCGGCCCGACAGGATGGCCACCGGCGTTAGCTCTGGT
CGACCATATATGATGTCCCCAACTGCAAATATATGAGGCACGCTGGTGGC
CTCCGCGGCGTCTACCACAATCTTGTCGTCATGATTCTTCACTCCGGCGG
CGTCCAGGTTGAGGTCCTCGATGAAACCTTT
BS14694.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11401-PA | 1551 | Trxr-2-RA | 937..1551 | 631..17 | 3025 | 99.6 | Minus |
CG2151-PA | 1476 | Trxr-1-RA | 1171..1232 | 322..261 | 235 | 95.1 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 1222..1283 | 322..261 | 235 | 95.1 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 1486..1547 | 322..261 | 235 | 95.1 | Minus |
CG2151-PA | 1476 | Trxr-1-RA | 1375..1436 | 118..57 | 135 | 88.7 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 1426..1487 | 118..57 | 135 | 88.7 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 1690..1751 | 118..57 | 135 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 1032..1646 | 631..17 | 3045 | 99.7 | Minus |
Trxr-1-RC | 2108 | CG2151-RC | 1287..1765 | 499..21 | 595 | 75.2 | Minus |
Trxr-1-RB | 2277 | CG2151-RB | 1456..1934 | 499..21 | 595 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22551257..22551871 | 631..17 | 3045 | 99.7 | Minus |
X | 23542271 | X | 8247212..8247690 | 499..21 | 580 | 74.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:49 has no hits.
BS14694.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:25 Download gff for
BS14694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 937..1551 | 17..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:20 Download gff for
BS14694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 1032..1646 | 17..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:46 Download gff for
BS14694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 1032..1646 | 17..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:46 Download gff for
BS14694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22551257..22551871 | 17..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:20 Download gff for
BS14694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22544357..22544971 | 17..631 | 99 | | Minus |
BS14694.5prime Sequence
722 bp (600 high quality bases) assembled on 2006-10-13
> BS14694.5prime
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGAAGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCT
BS14694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11401-PA | 1551 | Trxr-2-RA | 1..706 | 17..722 | 3505 | 99.8 | Plus |
CG2151-PC | 1527 | Trxr-1-RC | 191..311 | 222..342 | 330 | 90.9 | Plus |
CG2151-PA | 1476 | Trxr-1-RA | 140..260 | 222..342 | 330 | 90.9 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 455..575 | 222..342 | 330 | 90.9 | Plus |
CG32715-PA | 183 | CG32715-RA | 5..98 | 315..222 | 295 | 92.5 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 355..426 | 389..460 | 235 | 93 | Plus |
CG2151-PA | 1476 | Trxr-1-RA | 304..375 | 389..460 | 235 | 93 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 619..690 | 389..460 | 235 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 83..801 | 5..722 | 3525 | 99.4 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 106..460 | 775 | 81.8 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 483..837 | 106..460 | 775 | 81.8 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 762..924 | 560..722 | 215 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22550321..22551026 | 17..722 | 3515 | 99.9 | Plus |
X | 23542271 | X | 8246098..8246439 | 106..447 | 680 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:31:34 has no hits.
BS14694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:25 Download gff for
BS14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 1..706 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:41:08 Download gff for
BS14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 79..801 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:59 Download gff for
BS14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 79..801 | 1..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:59 Download gff for
BS14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22550304..22551026 | 1..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:41:08 Download gff for
BS14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22543404..22544126 | 1..722 | 99 | | Plus |
BS14694.pep Sequence
Translation from 16 to 1566
> BS14694.pep
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCS*
BS14694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-PA | 516 | CG11401-PA | 1..516 | 1..516 | 2690 | 100 | Plus |
Trxr-1-PA | 491 | CG2151-PA | 1..491 | 24..516 | 1980 | 75.9 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 25..508 | 31..516 | 1979 | 76.8 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 113..596 | 31..516 | 1979 | 76.8 | Plus |
CG7430-PB | 504 | CG7430-PB | 36..500 | 31..507 | 377 | 27.3 | Plus |