Clone BS14694 Report

Search the DGRC for BS14694

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptTrxr-2-RA
Protein status:BS14694.pep: full length peptide match
Sequenced Size:1583

Clone Sequence Records

BS14694.complete Sequence

1583 bp assembled on 2009-12-07

GenBank Submission: KX802623

> BS14694.complete
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCAT
TGTGCTGCGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCATGA
TGACTGAGCGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTG
GAGAGGCAGGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCAC
CCAAATGGACGGCAGCGACGTTTTCGACACCGTGCTGTGGGCCATTGGGC
GCAAAGGTCTCATCGAGGACCTCAACCTGGACGCCGCCGGAGTGAAGACT
CATGACGACAAGATTGTGGTAGACGCCGCGGAGGCCACCAGCGTGCCTCA
TATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACGCCGG
TGGCCATCCTGTCGGGCCGCCTGCTTGCCAGGCGTCTGTTCGCCGGCTCC
ACGCAGCTGATGGACTATGCCGACGTGGCAACCACAGTTTTTACTCCGCT
AGAATACAGTTGCGTCGGCATGTCGGAGGAAACGGCCATCGAACTGCGTG
GTGCTGACAACATCGAGGTCTTCCACGGCTACTACAAGCCCACAGAGTTC
TTTATTCCCCAGAAGAGCGTGCGTCACTGCTACCTCAAGGCCGTAGCCGA
AGTGTCCGGGGACCAGAAGATCCTTGGCCTGCACTACATCGGCCCAGTCG
CCGGCGAGGTCATCCAGGGCTTCGCCGCAGCCCTCAAGACCGGCTTGACC
GTAAAGACGCTTCTGAACACGGTGGGAATCCACCCCACCACCGCCGAAGA
GTTCACCCGGCTGTCAATCACCAAGCGATCTGGTCGGGATCCTACACCAG
CCTCCTGTTGCAGTTAGAAGCTTTCTAGACCAT

BS14694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1551 CG11401-PA 1..1551 17..1567 7755 100 Plus
Trxr-1-RC 1527 CG2151-PC 520..1523 560..1563 955 73 Plus
Trxr-1-RB 1791 CG2151-PB 784..1787 560..1563 955 73 Plus
Trxr-1-RC 1527 CG2151-PC 72..426 106..460 715 81.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 96..1646 17..1567 7755 100 Plus
Trxr-1-RC 2108 CG2151-RC 762..1765 560..1563 955 73 Plus
Trxr-1-RB 2277 CG2151-RB 931..1934 560..1563 955 73 Plus
Trxr-1-RC 2108 CG2151-RC 314..668 106..460 715 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22550321..22551871 17..1567 7755 100 Plus
X 23542271 X 8246819..8247690 692..1563 835 73.1 Plus
X 23542271 X 8246098..8246439 106..447 680 81.2 Plus
Blast to na_te.dros performed on 2014-11-28 02:08:31 has no hits.

BS14694.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:19 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1646 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:45 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1646 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:48 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1646 17..1567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:41 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1646 17..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:41 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22550321..22551871 17..1567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:45 Download gff for BS14694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22543421..22544971 17..1567 100   Plus

BS14694.3prime Sequence

631 bp (561 high quality bases) assembled on 2006-10-13

> BS14694.3prime
ATGGTCTAGAAAGCTTCTAACTGCAACAGGAGGCTGGTGTAGGATCCCGA
CCAGATCGCTTGGTGATTGACAGCCGGGTGAACTCTTCGGCGGTGGTGGG
GTGGATTCCCACCGTGTTCAGAAGCGTCTTTACGGTCAAGCCGGTCTTGA
GGGCTGCGGCGAAGCCCTGGATGACCTCGCCGGCGACTGGGCCGATGTAG
TGCAGGCCAAGGATCTTCTGGTCCCCGGACACTTCGGCTACGGCCTTGAG
GTAGCAGTGACGCACGCTCTTCTGGGGAATAAAGAACTCTGTGGGCTTGT
AGTAGCCGTGGAAGACCTCGATGTTGTCAGCACCACGCAGTTCGATGGCC
GTTTCCTCCGACATGCCGACGCAACTGTATTCTAGCGGAGTAAAAACTGT
GGTTGCCACGTCGGCATAGTCCATCAGCTGCGTGGAGCCGGCGAACAGAC
GCCTGGCAAGCAGGCGGCCCGACAGGATGGCCACCGGCGTTAGCTCTGGT
CGACCATATATGATGTCCCCAACTGCAAATATATGAGGCACGCTGGTGGC
CTCCGCGGCGTCTACCACAATCTTGTCGTCATGATTCTTCACTCCGGCGG
CGTCCAGGTTGAGGTCCTCGATGAAACCTTT

BS14694.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11401-PA 1551 Trxr-2-RA 937..1551 631..17 3025 99.6 Minus
CG2151-PA 1476 Trxr-1-RA 1171..1232 322..261 235 95.1 Minus
CG2151-PC 1527 Trxr-1-RC 1222..1283 322..261 235 95.1 Minus
CG2151-PB 1791 Trxr-1-RB 1486..1547 322..261 235 95.1 Minus
CG2151-PA 1476 Trxr-1-RA 1375..1436 118..57 135 88.7 Minus
CG2151-PC 1527 Trxr-1-RC 1426..1487 118..57 135 88.7 Minus
CG2151-PB 1791 Trxr-1-RB 1690..1751 118..57 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 1032..1646 631..17 3045 99.7 Minus
Trxr-1-RC 2108 CG2151-RC 1287..1765 499..21 595 75.2 Minus
Trxr-1-RB 2277 CG2151-RB 1456..1934 499..21 595 75.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22551257..22551871 631..17 3045 99.7 Minus
X 23542271 X 8247212..8247690 499..21 580 74.7 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:49 has no hits.

BS14694.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:25 Download gff for BS14694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 937..1551 17..631 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:20 Download gff for BS14694.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1032..1646 17..631 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:46 Download gff for BS14694.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1032..1646 17..631 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:46 Download gff for BS14694.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22551257..22551871 17..631 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:20 Download gff for BS14694.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22544357..22544971 17..631 99   Minus

BS14694.5prime Sequence

722 bp (600 high quality bases) assembled on 2006-10-13

> BS14694.5prime
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGAAGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCT

BS14694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11401-PA 1551 Trxr-2-RA 1..706 17..722 3505 99.8 Plus
CG2151-PC 1527 Trxr-1-RC 191..311 222..342 330 90.9 Plus
CG2151-PA 1476 Trxr-1-RA 140..260 222..342 330 90.9 Plus
CG2151-PB 1791 Trxr-1-RB 455..575 222..342 330 90.9 Plus
CG32715-PA 183 CG32715-RA 5..98 315..222 295 92.5 Minus
CG2151-PC 1527 Trxr-1-RC 355..426 389..460 235 93 Plus
CG2151-PA 1476 Trxr-1-RA 304..375 389..460 235 93 Plus
CG2151-PB 1791 Trxr-1-RB 619..690 389..460 235 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 83..801 5..722 3525 99.4 Plus
Trxr-1-RC 2108 CG2151-RC 314..668 106..460 775 81.8 Plus
Trxr-1-RB 2277 CG2151-RB 483..837 106..460 775 81.8 Plus
Trxr-1-RC 2108 CG2151-RC 762..924 560..722 215 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22550321..22551026 17..722 3515 99.9 Plus
X 23542271 X 8246098..8246439 106..447 680 81.2 Plus
Blast to na_te.dros performed on 2015-02-11 22:31:34 has no hits.

BS14694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:25 Download gff for BS14694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 1..706 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:41:08 Download gff for BS14694.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 79..801 1..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:59 Download gff for BS14694.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 79..801 1..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:59 Download gff for BS14694.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22550304..22551026 1..722 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:41:08 Download gff for BS14694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22543404..22544126 1..722 99   Plus

BS14694.pep Sequence

Translation from 16 to 1566

> BS14694.pep
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCS*

BS14694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-PA 516 CG11401-PA 1..516 1..516 2690 100 Plus
Trxr-1-PA 491 CG2151-PA 1..491 24..516 1980 75.9 Plus
Trxr-1-PC 508 CG2151-PC 25..508 31..516 1979 76.8 Plus
Trxr-1-PB 596 CG2151-PB 113..596 31..516 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 36..500 31..507 377 27.3 Plus