Clone Sequence Records
BS14702.3prime Sequence
712 bp (711 high quality bases) assembled on 2006-10-13
> BS14702.3prime
ATGGTCTAGAAAGCTTTTATTCAGTCTTTGGCGGGGTCTCTTCATTTGGT
GGAGCCTCCTCCTCGTCAGCTATACTTCCGACCAGGCTTCCTTGGGTTTT
TCTCTTACTAGCCTCCGCGGCATACTCACCAAATGTGAGATTTATGTCGT
AGGGAGTGCGCCGGAAGATGTTCGGAGGAGTGTAGTTGCTCTGTATGGGC
CAGAAGAGACCATCCTCGTCGGGCGAGAAGGGCACCCGGCCGTAGAGCCA
GGCGAACTCTCCCAACTCGTAGTAGAATCGTGTGGATGCCAAAACCAGTT
CGATGCGCTGGATCTCGGGCAGGTGCTTCCGGAACACCTCCACCGGCAAG
TGTTCGCTTAGGATTGAGCTTTTGGACTTTGACTTTGGCATATCGTCCTC
CATGTCGCTTTCTCGCGTGGAGATCCCGTCCGGATCCACTTGCTGACCCT
CCGAGAGCAGCCGGCAGATGGTCAGCAGCTTATCCTTGATGATCAGATGC
TGTTTTCCCATGAGATACTCATCGGTGGGCGTGGAGGTGGGGAACTTCTC
GTTCAGAAAGACGGAAGGGATGCGGCGAAACATAAGTTCTTTTGTATAGA
GCTCCTGCACGTGATCCTCGATCTGGAAGACGCGATTCATCAACCAGAAA
GTCTCACAGCAATCGGCCAGGGCCCGTGTGAAGCATCCGATCATGTCCTC
GGAGGACTCCAG
BS14702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 1341 | CG15878-RA | 646..1341 | 712..17 | 3305 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 761..1456 | 712..17 | 3375 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211048..2211743 | 17..712 | 3375 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:20 has no hits.
BS14702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:27 Download gff for
BS14702.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 646..1341 | 17..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:23 Download gff for
BS14702.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 761..1462 | 11..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:37 Download gff for
BS14702.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 761..1462 | 11..712 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:37 Download gff for
BS14702.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211042..2211743 | 11..712 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:23 Download gff for
BS14702.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211042..2211743 | 11..712 | 98 | | Plus |
BS14702.5prime Sequence
774 bp (715 high quality bases) assembled on 2006-10-13
> BS14702.5prime
GAAGTTATCAGTCGACATGTCCTTTCACCGGATCAATGTCAAACAAGCTT
CCATAGCCGCCCGCCAGCGGCAGTCGCGGACGACCAGGATGACCCGGCAC
ACCATTTTCAATTTGAAGAGACCCATTACCTTCCAGGTGCGCAAATCGCT
GGTGGAGTACGTGGACATGGAGCTAGCGGACATGGACACCTCCGTGTTCT
ATCAGCGCATCTTTATCCTGGCCAAGAACTGCCACTTGACGCCAGTTGTG
TCCAACGAGGAGTTGCTCGCCGACGCGGTGGTGGAACAGGCTGAGCCTGA
ACCAGATGAAGCGGCGCCCATACAGTTCATGGAGGATGTGATCTTCGACA
ACACTGAAACGGAATCGCCCATGAACACGACGGCGGATCCAGCGCCCATT
CCTGCGCCGGAAGAAGGTGCGACGGAAACTGCAGAAGTAGTTACCCACAT
GTTCCGTTTCAGTGAAGACGATCCAGAAGAAGACTTTGTCGAAGAGGAGG
AACTGGAAATGGACACCCAAGCACCCGATCAGCCCAAGGACTTCTTTGCC
ATCTTCAGCGAGCGCCTGCAGGAGCTGCATAAGCAGTGCAAGGCGCTGGC
CATCACGCCGGATCCCATGTGCGGATTGTTTCTCCACATGGGCGAATACA
GCATGCTGATGCTGGAGTCCTCCGAGGACATGATCGGATGCTTCACACGG
GCCCTGGCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCA
GATCGAGGATCACGTGCAGGAACT
BS14702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 1341 | CG15878-RA | 1..755 | 17..771 | 3700 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 116..870 | 17..771 | 3730 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211634..2212388 | 771..17 | 3730 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:53 has no hits.
BS14702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:27 Download gff for
BS14702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:47 Download gff for
BS14702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..873 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:41 Download gff for
BS14702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..873 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:41 Download gff for
BS14702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211631..2212388 | 17..774 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:47 Download gff for
BS14702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211631..2212388 | 17..774 | 99 | | Minus |
BS14702.complete Sequence
1373 bp assembled on 2006-11-01
GenBank Submission: FJ637763
> BS14702.complete
GAAGTTATCAGTCGACATGTCCTTTCACCGGATCAATGTCAAACAAGCTT
CCATAGCCGCCCGCCAGCGGCAGTCGCGGACGACCAGGATGACCCGGCAC
ACCATTTTCAATTTGAAGAGACCCATTACCTTCCAGGTGCGCAAATCGCT
GGTGGAGTACGTGGACATGGAGCTAGCGGACATGGACACCTCCGTGTTCT
ATCAGCGCATCTTTATCCTGGCCAAGAACTGCCACTTGACGCCAGTTGTG
TCCAACGAGGAGTTGCTCGCCGACGCGGTGGTGGAACAGGCTGAGCCTGA
ACCAGATGAAGCGGCGCCCATACAGTTCATGGAGGATGTGATCTTCGACA
ACACTGAAACGGAATCGCCCATGAACACGACGGCGGATCCAGCGCCCATT
CCTGCGCCGGAAGAAGGTGCGACGGAAACTGCAGAAGTAGTTACCCACAT
GTTCCGTTTCAGTGAAGACGATCCAGAAGAAGACTTTGTCGAAGAGGAGG
AACTGGAAATGGACACCCAAGCACCCGATCAGCCCAAGGACTTCTTTGCC
ATCTTCAGCGAGCGCCTGCAGGAGCTGCATAAGCAGTGCAAGGCGCTGGC
CATCACGCCGGATCCCATGTGCGGATTGTTTCTCCACATGGGCGAATACA
GCATGCTGATGCTGGAGTCCTCCGAGGACATGATCGGATGCTTCACACGG
GCCCTGGCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCA
GATCGAGGATCACGTGCAGGAGCTCTATACAAAAGAACTTATGTTTCGCC
GCATCCCTTCCGTCTTTCTGAACGAGAAGTTCCCCACCTCCACGCCCACC
GATGAGTATCTCATGGGAAAACAGCATCTGATCATCAAGGATAAGCTGCT
GACCATCTGCCGGCTGCTCTCGGAGGGTCAGCAAGTGGATCCGGACGGGA
TCTCCACGCGAGAAAGCGACATGGAGGACGATATGCCAAAGTCAAAGTCC
AAAAGCTCAATCCTAAGCGAACACTTGCCGGTGGAGGTGTTCCGGAAGCA
CCTGCCCGAGATCCAGCGCATCGAACTGGTTTTGGCATCCACACGATTCT
ACTACGAGTTGGGAGAGTTCGCCTGGCTCTACGGCCGGGTGCCCTTCTCG
CCCGACGAGGATGGTCTCTTCTGGCCCATACAGAGCAACTACACTCCTCC
GAACATCTTCCGGCGCACTCCCTACGACATAAATCTCACATTTGGTGAGT
ATGCCGCGGAGGCTAGTAAGAGAAAAACCCAAGGAAGCCTGGTCGGAAGT
ATAGCTGACGAGGAGGAGGCTCCACCAAATGAAGAGACCCCGCCAAAGAC
TGAATAAAAGCTTTCTAGACCAT
BS14702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1341 | CG15878-PA | 1..1341 | 17..1357 | 6555 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 116..1456 | 17..1357 | 6555 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211048..2212388 | 1357..17 | 6555 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:12 has no hits.
BS14702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:32 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 1..1341 | 17..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:28 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1462 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:45 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1454 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:33 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1462 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:55 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1454 | 17..1355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:55 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211050..2212388 | 17..1355 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:45 Download gff for
BS14702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211050..2212388 | 17..1355 | 99 | | Minus |
BS14702.pep Sequence
Translation from 16 to 1356
> BS14702.pep
MSFHRINVKQASIAARQRQSRTTRMTRHTIFNLKRPITFQVRKSLVEYVD
MELADMDTSVFYQRIFILAKNCHLTPVVSNEELLADAVVEQAEPEPDEAA
PIQFMEDVIFDNTETESPMNTTADPAPIPAPEEGATETAEVVTHMFRFSE
DDPEEDFVEEEELEMDTQAPDQPKDFFAIFSERLQELHKQCKALAITPDP
MCGLFLHMGEYSMLMLESSEDMIGCFTRALADCCETFWLMNRVFQIEDHV
QELYTKELMFRRIPSVFLNEKFPTSTPTDEYLMGKQHLIIKDKLLTICRL
LSEGQQVDPDGISTRESDMEDDMPKSKSKSSILSEHLPVEVFRKHLPEIQ
RIELVLASTRFYYELGEFAWLYGRVPFSPDEDGLFWPIQSNYTPPNIFRR
TPYDINLTFGEYAAEASKRKTQGSLVGSIADEEEAPPNEETPPKTE*
BS14702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 446 | CG15878-PA | 1..446 | 1..446 | 2334 | 100 | Plus |
