Clone BS14704 Report

Search the DGRC for BS14704

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG30148-RA
Protein status:BS14704.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14704.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS14704.5prime
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAATAGAAGCTTTCT
AGACC

BS14704.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PA 375 CG30148-RA 1..375 17..391 1850 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..430 17..391 1860 99.7 Plus
CG30148-RA 618 CG30148-RA 56..430 17..391 1860 99.7 Plus
GNBP3-RA 1531 CG5008-RA 111..341 107..337 315 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547229..20547603 391..17 1860 99.7 Minus
3L 28110227 3L 8955131..8955361 107..337 315 75.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:44:30 has no hits.

BS14704.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:29 Download gff for BS14704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:46 Download gff for BS14704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..430 5..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:22 Download gff for BS14704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..430 5..391 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:22 Download gff for BS14704.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20547229..20547599 21..391 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:46 Download gff for BS14704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434734..16435104 21..391 99 -> Minus

BS14704.3prime Sequence

405 bp (405 high quality bases) assembled on 2006-10-13

> BS14704.3prime
ATGGTCTAGAAAGCTTCTATTTATGTGGATTGTCGTAACTGGTGACCACA
TGAGCACCTTCATCCTGTCTATAGCCCAGCCCGTTGTAAATGACGTAGGT
CCAAAAGTACAGGGTATCTCCATGGTTGAGCTTTGTCTTGTGATCTCGGA
ATGTCCAACGTCCCCGCTTGGCTTTCGGAATATCCCTGGACCATTGTCCC
GCCTCCAGGCCGTCGAACTCCTCGTTTAGCTTGCCATGGAAGGCAAACAG
TGAAATACCCTCCGCATCCGGAATGGAGACCTCGAATCCCCGGGGATAGA
ACACGCGCACCTGTGCCTCAGGTGCCTCGTAGGCGTGGCCAAAGGCAATC
GCCAACACCAGGAGCAGCAGGCACAGCGGAAGTGTAGGCATGTCGACTGA
TAACT

BS14704.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PA 375 CG30148-RA 1..375 391..17 1850 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..430 391..17 1860 99.7 Minus
CG30148-RA 618 CG30148-RA 56..430 391..17 1860 99.7 Minus
GNBP3-RA 1531 CG5008-RA 111..341 301..71 315 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547229..20547603 17..391 1860 99.7 Plus
3L 28110227 3L 8955131..8955361 301..71 315 75.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:18:47 has no hits.

BS14704.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:29 Download gff for BS14704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 17..391 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:22 Download gff for BS14704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..430 17..403 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:31 Download gff for BS14704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..430 17..403 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:31 Download gff for BS14704.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20547229..20547599 17..387 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:22 Download gff for BS14704.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434734..16435104 17..387 99 -> Plus

BS14704.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ637764

> BS14704.complete
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAATAGAAGCTTTCT
AGACCAT

BS14704.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 375 CG30148-PB 1..375 17..391 1860 99.7 Plus
CG30148-RA 375 CG30148-PA 1..375 17..391 1860 99.7 Plus
GNBP3-RA 1473 CG5008-PA 106..336 107..337 315 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..430 17..391 1860 99.7 Plus
CG30148-RA 618 CG30148-RA 56..430 17..391 1860 99.7 Plus
GNBP3-RA 1531 CG5008-RA 111..341 107..337 315 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547229..20547603 391..17 1860 99.7 Minus
3L 28110227 3L 8955131..8955361 107..337 315 75.8 Plus
Blast to na_te.dros performed on 2014-11-28 00:59:20 has no hits.

BS14704.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:34 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:21 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 67..453 5..391 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:00 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 56..424 17..385 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:34 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 67..453 5..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:31 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 56..424 17..385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:31 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20547235..20547603 17..385 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:00 Download gff for BS14704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434740..16435108 17..385 99   Minus

BS14704.pep Sequence

Translation from 16 to 390

> BS14704.pep
MPTLPLCLLLLVLAIAFGHAYEAPEAQVRVFYPRGFEVSIPDAEGISLFA
FHGKLNEEFDGLEAGQWSRDIPKAKRGRWTFRDHKTKLNHGDTLYFWTYV
IYNGLGYRQDEGAHVVTSYDNPHK*

BS14704.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PB 124 CG30148-PB 1..124 1..124 679 100 Plus
CG30148-PA 124 CG30148-PA 1..124 1..124 679 100 Plus
GNBP3-PA 490 CG5008-PA 13..132 7..123 425 66.1 Plus
GNBP-like3-PA 152 CG13422-PA 7..124 4..121 284 44.1 Plus
CG12780-PA 100 CG12780-PA 4..93 21..109 214 50 Plus