Clone BS14706 Report

Search the DGRC for BS14706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptPGAP5-RB
Protein status:BS14706.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14706.3prime Sequence

655 bp (653 high quality bases) assembled on 2006-10-13

> BS14706.3prime
ATGGTCTAGAAAGCTTCTAGTCTAAATAATTAACCTTCCGATGATCTACA
GCCGACGACTGTCTTCTGCTTTGGATGCACTTTCGTAGCTGGAACCCGAT
GACAATTAGGCAAAGAATGCCAGCACTCAGATAGCTATTGAAGACAAACT
GCTGTGGCAGCATTTTGCACTTGGAAACCACATAGTCATCGGGGGTTATA
GTGGCCAGCATAAAGCTGGGATTAACTTTGTTTCGCCAGCTGAATGAGGC
CACCGTGTACTCATCGATGCCCAGTCGATTTACACTGTGACAGAAGTGAT
GTGAATGACCGGCGAATGCCAGCCTTGGCTTAAGAAGCTCTCCCAGCATA
TCCGTGGCATCCTTGGAGAGCACATGAAACCGCTCTCGGAACGCCTCGAT
GTACGGAGCATCGTGCTCCTCGCACATGGTATCCGAAATGCGGTAGGTGG
GAAAGTGCTGCAATAGAATTGGCTGGCTGTACGGGTGCCGCCTGGTGCGA
GCGCACTCCGCCTCTAGTGGATACTTCATGCAGTACAAAGTCCGCGAAAT
GTTTTTCAACTGATCCTCGGCCTGGGTGCAAAACATGCAACCATCACCTT
CCATAGCCATCGAATTTATCACCACAAAATGGATTTGTTTAATGGTGTAC
AAATT

BS14706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8455-PB 1113 CG8455-RB 475..1113 655..17 3145 99.6 Minus
CG8455-PA 1104 CG8455-RA 475..1103 655..27 3095 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-RB 1500 CG8455-RB 565..1204 655..16 3170 99.7 Minus
PGAP5-RC 1566 CG8455-RC 636..1264 655..27 3115 99.7 Minus
PGAP5-RA 1565 CG8455-RA 565..1193 655..27 3115 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8199584..8200034 655..205 2225 99.6 Minus
2L 23513712 2L 8200101..8200280 206..27 900 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:48:15 has no hits.

BS14706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:30 Download gff for BS14706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8455-PB 475..1113 17..655 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:49 Download gff for BS14706.3prime
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 565..1204 16..655 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:37 Download gff for BS14706.3prime
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 565..1204 16..655 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:37 Download gff for BS14706.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8199584..8200033 206..655 99 -> Minus
2L 8200102..8200280 27..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:49 Download gff for BS14706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8199584..8200033 206..655 99 -> Minus
arm_2L 8200102..8200280 27..205 100   Minus

BS14706.5prime Sequence

756 bp (664 high quality bases) assembled on 2006-10-13

> BS14706.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACCGCCAGCCAATTCTATTGCAACACTTTCCCCCC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGGT

BS14706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8455-PA 1104 CG8455-RA 1..738 17..754 3565 99.3 Plus
CG8455-PB 1113 CG8455-RB 1..738 17..754 3565 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-RC 1566 CG8455-RC 162..899 17..754 3615 99.3 Plus
PGAP5-RB 1500 CG8455-RB 91..828 17..754 3615 99.3 Plus
PGAP5-RA 1565 CG8455-RA 91..828 17..754 3615 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8199043..8199461 17..435 2080 99.8 Plus
2L 23513712 2L 8199529..8199847 436..754 1535 98.7 Plus
Blast to na_te.dros performed on 2015-01-30 18:00:59 has no hits.

BS14706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:30 Download gff for BS14706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8455-PB 1..739 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:01 Download gff for BS14706.5prime
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RA 83..829 7..756 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:34 Download gff for BS14706.5prime
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RA 83..829 7..756 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:34 Download gff for BS14706.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8199035..8199461 7..435 98 -> Plus
2L 8199529..8199848 436..756 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:01 Download gff for BS14706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8199035..8199461 7..435 98 -> Plus
arm_2L 8199529..8199848 436..756 98   Plus

BS14706.complete Sequence

1145 bp assembled on 2006-11-01

GenBank Submission: FJ637765

> BS14706.complete
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACAGCCAGCCAATTCTATTGCAGCACTTTCCCACC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGTTCCGAGAGCGGTTTCATGTGCTCTCCAAGGATGCCACGGATATGC
TGGGAGAGCTTCTTAAGCCAAGGCTGGCATTCGCCGGTCATTCACATCAC
TTCTGTCACAGTGTAAATCGACTGGGCATCGATGAGTACACGGTGGCCTC
ATTCAGCTGGCGAAACAAAGTTAATCCCAGCTTTATGCTGGCCACTATAA
CCCCCGATGACTATGTGGTTTCCAAGTGCAAAATGCTGCCACAGCAGTTT
GTCTTCAATAGCTATCTGAGTGCTGGCATTCTTTGCCTAATTGTCATCGG
GTTCCAGCTACGAAAGTGCATCCAAAGCAGAAGACAGTCGTCGGCTGTAG
ATCATCGGAAGGTTAATTATTTAGACTAGAAGCTTTCTAGACCAT

BS14706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-RB 1113 CG8455-PB 1..1113 17..1129 5520 99.7 Plus
PGAP5-RC 1104 CG8455-PC 1..1103 17..1119 5470 99.7 Plus
PGAP5-RA 1104 CG8455-PA 1..1103 17..1119 5470 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-RB 1500 CG8455-RB 91..1204 17..1130 5525 99.7 Plus
PGAP5-RC 1566 CG8455-RC 162..1264 17..1119 5470 99.7 Plus
PGAP5-RA 1565 CG8455-RA 91..1193 17..1119 5470 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8199529..8200034 436..941 2500 99.6 Plus
2L 23513712 2L 8199043..8199461 17..435 2080 99.8 Plus
2L 23513712 2L 8200101..8200280 940..1119 900 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:20:40 has no hits.

BS14706.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:35 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 1..1113 17..1129 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:30 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 77..1198 7..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:59 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 91..1203 17..1129 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:35 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 77..1198 7..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:17 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 91..1203 17..1129 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:17 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8200102..8200280 941..1119 100   Plus
2L 8199043..8199461 17..435 99 -> Plus
2L 8199529..8200033 436..940 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:59 Download gff for BS14706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8199043..8199461 17..435 99 -> Plus
arm_2L 8199529..8200033 436..940 99 -> Plus
arm_2L 8200102..8200280 941..1119 100   Plus

BS14706.pep Sequence

Translation from 16 to 1128

> BS14706.pep
MRFLYACFVIVLCALIFCEYVADFVVLQKCKWPEIKRKKYVDDPLRAMIL
ADPHLLGPHRGHWLDKLYREWHMTRAFQAASRLFQPDVVFVLGDLFDEGD
MVSDKQFQEYVWRYLKMFHLPPGIPLISVAGNHDVGFHYKMHPFFMSRFE
SYLNNSSVNLYTIKQIHFVVINSMAMEGDGCMFCTQAEDQLKNISRTLYC
MKYPLEAECARTRRHPYSQPILLQHFPTYRISDTMCEEHDAPYIEAFRER
FHVLSKDATDMLGELLKPRLAFAGHSHHFCHSVNRLGIDEYTVASFSWRN
KVNPSFMLATITPDDYVVSKCKMLPQQFVFNSYLSAGILCLIVIGFQLRK
CIQSRRQSSAVDHRKVNYLD*

BS14706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-PB 370 CG8455-PB 1..370 1..370 2005 100 Plus
PGAP5-PC 367 CG8455-PC 1..367 1..367 1988 100 Plus
PGAP5-PA 367 CG8455-PA 1..367 1..367 1988 100 Plus