Clone Sequence Records
BS14706.3prime Sequence
655 bp (653 high quality bases) assembled on 2006-10-13
> BS14706.3prime
ATGGTCTAGAAAGCTTCTAGTCTAAATAATTAACCTTCCGATGATCTACA
GCCGACGACTGTCTTCTGCTTTGGATGCACTTTCGTAGCTGGAACCCGAT
GACAATTAGGCAAAGAATGCCAGCACTCAGATAGCTATTGAAGACAAACT
GCTGTGGCAGCATTTTGCACTTGGAAACCACATAGTCATCGGGGGTTATA
GTGGCCAGCATAAAGCTGGGATTAACTTTGTTTCGCCAGCTGAATGAGGC
CACCGTGTACTCATCGATGCCCAGTCGATTTACACTGTGACAGAAGTGAT
GTGAATGACCGGCGAATGCCAGCCTTGGCTTAAGAAGCTCTCCCAGCATA
TCCGTGGCATCCTTGGAGAGCACATGAAACCGCTCTCGGAACGCCTCGAT
GTACGGAGCATCGTGCTCCTCGCACATGGTATCCGAAATGCGGTAGGTGG
GAAAGTGCTGCAATAGAATTGGCTGGCTGTACGGGTGCCGCCTGGTGCGA
GCGCACTCCGCCTCTAGTGGATACTTCATGCAGTACAAAGTCCGCGAAAT
GTTTTTCAACTGATCCTCGGCCTGGGTGCAAAACATGCAACCATCACCTT
CCATAGCCATCGAATTTATCACCACAAAATGGATTTGTTTAATGGTGTAC
AAATT
BS14706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8455-PB | 1113 | CG8455-RB | 475..1113 | 655..17 | 3145 | 99.6 | Minus |
CG8455-PA | 1104 | CG8455-RA | 475..1103 | 655..27 | 3095 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1500 | CG8455-RB | 565..1204 | 655..16 | 3170 | 99.7 | Minus |
PGAP5-RC | 1566 | CG8455-RC | 636..1264 | 655..27 | 3115 | 99.7 | Minus |
PGAP5-RA | 1565 | CG8455-RA | 565..1193 | 655..27 | 3115 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199584..8200034 | 655..205 | 2225 | 99.6 | Minus |
2L | 23513712 | 2L | 8200101..8200280 | 206..27 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:48:15 has no hits.
BS14706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:30 Download gff for
BS14706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PB | 475..1113 | 17..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:49 Download gff for
BS14706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 565..1204 | 16..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:37 Download gff for
BS14706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 565..1204 | 16..655 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:37 Download gff for
BS14706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8199584..8200033 | 206..655 | 99 | -> | Minus |
2L | 8200102..8200280 | 27..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:49 Download gff for
BS14706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199584..8200033 | 206..655 | 99 | -> | Minus |
arm_2L | 8200102..8200280 | 27..205 | 100 | | Minus |
BS14706.5prime Sequence
756 bp (664 high quality bases) assembled on 2006-10-13
> BS14706.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACCGCCAGCCAATTCTATTGCAACACTTTCCCCCC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGGT
BS14706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8455-PA | 1104 | CG8455-RA | 1..738 | 17..754 | 3565 | 99.3 | Plus |
CG8455-PB | 1113 | CG8455-RB | 1..738 | 17..754 | 3565 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RC | 1566 | CG8455-RC | 162..899 | 17..754 | 3615 | 99.3 | Plus |
PGAP5-RB | 1500 | CG8455-RB | 91..828 | 17..754 | 3615 | 99.3 | Plus |
PGAP5-RA | 1565 | CG8455-RA | 91..828 | 17..754 | 3615 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199043..8199461 | 17..435 | 2080 | 99.8 | Plus |
2L | 23513712 | 2L | 8199529..8199847 | 436..754 | 1535 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:00:59 has no hits.
BS14706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:30 Download gff for
BS14706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PB | 1..739 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:01 Download gff for
BS14706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RA | 83..829 | 7..756 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:34 Download gff for
BS14706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RA | 83..829 | 7..756 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:34 Download gff for
BS14706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8199035..8199461 | 7..435 | 98 | -> | Plus |
2L | 8199529..8199848 | 436..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:01 Download gff for
BS14706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199035..8199461 | 7..435 | 98 | -> | Plus |
arm_2L | 8199529..8199848 | 436..756 | 98 | | Plus |
BS14706.complete Sequence
1145 bp assembled on 2006-11-01
GenBank Submission: FJ637765
> BS14706.complete
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACAGCCAGCCAATTCTATTGCAGCACTTTCCCACC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGTTCCGAGAGCGGTTTCATGTGCTCTCCAAGGATGCCACGGATATGC
TGGGAGAGCTTCTTAAGCCAAGGCTGGCATTCGCCGGTCATTCACATCAC
TTCTGTCACAGTGTAAATCGACTGGGCATCGATGAGTACACGGTGGCCTC
ATTCAGCTGGCGAAACAAAGTTAATCCCAGCTTTATGCTGGCCACTATAA
CCCCCGATGACTATGTGGTTTCCAAGTGCAAAATGCTGCCACAGCAGTTT
GTCTTCAATAGCTATCTGAGTGCTGGCATTCTTTGCCTAATTGTCATCGG
GTTCCAGCTACGAAAGTGCATCCAAAGCAGAAGACAGTCGTCGGCTGTAG
ATCATCGGAAGGTTAATTATTTAGACTAGAAGCTTTCTAGACCAT
BS14706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1113 | CG8455-PB | 1..1113 | 17..1129 | 5520 | 99.7 | Plus |
PGAP5-RC | 1104 | CG8455-PC | 1..1103 | 17..1119 | 5470 | 99.7 | Plus |
PGAP5-RA | 1104 | CG8455-PA | 1..1103 | 17..1119 | 5470 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1500 | CG8455-RB | 91..1204 | 17..1130 | 5525 | 99.7 | Plus |
PGAP5-RC | 1566 | CG8455-RC | 162..1264 | 17..1119 | 5470 | 99.7 | Plus |
PGAP5-RA | 1565 | CG8455-RA | 91..1193 | 17..1119 | 5470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199529..8200034 | 436..941 | 2500 | 99.6 | Plus |
2L | 23513712 | 2L | 8199043..8199461 | 17..435 | 2080 | 99.8 | Plus |
2L | 23513712 | 2L | 8200101..8200280 | 940..1119 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:40 has no hits.
BS14706.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:35 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 1..1113 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:30 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 77..1198 | 7..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:59 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 91..1203 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:35 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 77..1198 | 7..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:17 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 91..1203 | 17..1129 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:17 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8200102..8200280 | 941..1119 | 100 | | Plus |
2L | 8199043..8199461 | 17..435 | 99 | -> | Plus |
2L | 8199529..8200033 | 436..940 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:59 Download gff for
BS14706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199043..8199461 | 17..435 | 99 | -> | Plus |
arm_2L | 8199529..8200033 | 436..940 | 99 | -> | Plus |
arm_2L | 8200102..8200280 | 941..1119 | 100 | | Plus |
BS14706.pep Sequence
Translation from 16 to 1128
> BS14706.pep
MRFLYACFVIVLCALIFCEYVADFVVLQKCKWPEIKRKKYVDDPLRAMIL
ADPHLLGPHRGHWLDKLYREWHMTRAFQAASRLFQPDVVFVLGDLFDEGD
MVSDKQFQEYVWRYLKMFHLPPGIPLISVAGNHDVGFHYKMHPFFMSRFE
SYLNNSSVNLYTIKQIHFVVINSMAMEGDGCMFCTQAEDQLKNISRTLYC
MKYPLEAECARTRRHPYSQPILLQHFPTYRISDTMCEEHDAPYIEAFRER
FHVLSKDATDMLGELLKPRLAFAGHSHHFCHSVNRLGIDEYTVASFSWRN
KVNPSFMLATITPDDYVVSKCKMLPQQFVFNSYLSAGILCLIVIGFQLRK
CIQSRRQSSAVDHRKVNYLD*
BS14706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-PB | 370 | CG8455-PB | 1..370 | 1..370 | 2005 | 100 | Plus |
PGAP5-PC | 367 | CG8455-PC | 1..367 | 1..367 | 1988 | 100 | Plus |
PGAP5-PA | 367 | CG8455-PA | 1..367 | 1..367 | 1988 | 100 | Plus |