Clone Sequence Records
BS14708.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS14708.3prime
ATGGTCTAGAAAGCTTCTATCGCTTGAAGCTTAGGCTCTCAGCTGGCGAA
CAAAAGGCTTTAATGTGATCGCAGTCCCGTCTACCCAGTGCCATATCCGA
GTGATAGTCGATCGGATAGACGATGGGCTGGCGATCAATACGCCACAAGG
TCGGCTCAGAAAGGACCTCAACGTCGGTATCCAACTTAACGTCGCACTTG
CCCGCATACGAGGTGAACCTTATCGGCTTGTGGACTCGATTATAGGGGTC
TTTGAAATAATCCCTGTAGTCCTGGCACTCCAAGTAGAACCTATCAACTC
CCCGGACTGCGGCGTAGTCCAACACTTTCAGTCCAGGCTTATCGCAATTG
AAGATGGAAAGGCGGTGTATCCGGCTACTCTTGGACACATTCCACATGTC
CACCTCTGGAATGAGCATGTCGACTGATAACT
BS14708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-PA | 402 | CG13110-RA | 1..402 | 418..17 | 1910 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-RA | 527 | CG13110-RA | 79..480 | 418..17 | 1950 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9350548..9350949 | 418..17 | 1950 | 99 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:17:57 has no hits.
BS14708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:32 Download gff for
BS14708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-PA | 1..402 | 17..418 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:25 Download gff for
BS14708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..486 | 8..418 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:33 Download gff for
BS14708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..486 | 8..418 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:33 Download gff for
BS14708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9350548..9350955 | 8..418 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:25 Download gff for
BS14708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9350548..9350955 | 8..418 | 98 | | Minus |
BS14708.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS14708.5prime
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGATAGAAGCTTTCTAGACC
BS14708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-PA | 402 | CG13110-RA | 1..402 | 17..418 | 1910 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-RA | 527 | CG13110-RA | 79..480 | 17..418 | 1950 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9350548..9350949 | 17..418 | 1950 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:12:41 has no hits.
BS14708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:32 Download gff for
BS14708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:39 Download gff for
BS14708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..486 | 17..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:56 Download gff for
BS14708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..486 | 17..427 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:56 Download gff for
BS14708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9350548..9350955 | 17..427 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:39 Download gff for
BS14708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9350548..9350955 | 17..427 | 98 | | Plus |
BS14708.complete Sequence
434 bp assembled on 2006-11-01
GenBank Submission: FJ637766
> BS14708.complete
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGATAGAAGCTTTCTAGACCAT
BS14708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-RA | 402 | CG13110-PA | 1..402 | 17..418 | 1950 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-RA | 527 | CG13110-RA | 79..480 | 17..418 | 1950 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9350548..9350949 | 17..418 | 1950 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:25 has no hits.
BS14708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:11 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:58 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 72..479 | 17..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..480 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:11 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 72..479 | 17..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:17 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13110-RA | 79..480 | 17..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:17 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9350548..9350949 | 17..418 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for
BS14708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9350548..9350949 | 17..418 | 99 | | Plus |
BS14708.pep Sequence
Translation from 16 to 417
> BS14708.pep
MLIPEVDMWNVSKSSRIHRLSIFNCDKPGLKVLDYAAVRGVDRFYLECQD
YRDYFKDPYNRVHKPIRFTSYAGKCDVKLDTDVEVLSEPTLWRIDRQPIV
YPIDYHSDMALGRRDCDHIKAFCSPAESLSFKR*
BS14708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13110-PA | 133 | CG13110-PA | 1..133 | 1..133 | 725 | 100 | Plus |
CG31347-PA | 143 | CG31347-PA | 6..117 | 3..113 | 262 | 44.6 | Plus |
CG43796-PA | 127 | CG43796-PA | 4..106 | 11..112 | 234 | 42.7 | Plus |
CG14391-PA | 135 | CG14391-PA | 5..116 | 3..112 | 229 | 42 | Plus |