Clone BS14708 Report

Search the DGRC for BS14708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG13110-RA
Protein status:BS14708.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14708.3prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS14708.3prime
ATGGTCTAGAAAGCTTCTATCGCTTGAAGCTTAGGCTCTCAGCTGGCGAA
CAAAAGGCTTTAATGTGATCGCAGTCCCGTCTACCCAGTGCCATATCCGA
GTGATAGTCGATCGGATAGACGATGGGCTGGCGATCAATACGCCACAAGG
TCGGCTCAGAAAGGACCTCAACGTCGGTATCCAACTTAACGTCGCACTTG
CCCGCATACGAGGTGAACCTTATCGGCTTGTGGACTCGATTATAGGGGTC
TTTGAAATAATCCCTGTAGTCCTGGCACTCCAAGTAGAACCTATCAACTC
CCCGGACTGCGGCGTAGTCCAACACTTTCAGTCCAGGCTTATCGCAATTG
AAGATGGAAAGGCGGTGTATCCGGCTACTCTTGGACACATTCCACATGTC
CACCTCTGGAATGAGCATGTCGACTGATAACT

BS14708.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 402 CG13110-RA 1..402 418..17 1910 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..480 418..17 1950 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350949 418..17 1950 99 Minus
Blast to na_te.dros performed on 2015-01-31 10:17:57 has no hits.

BS14708.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:32 Download gff for BS14708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 17..418 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:25 Download gff for BS14708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..486 8..418 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:33 Download gff for BS14708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..486 8..418 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:33 Download gff for BS14708.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350955 8..418 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:25 Download gff for BS14708.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350955 8..418 98   Minus

BS14708.5prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS14708.5prime
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGATAGAAGCTTTCTAGACC

BS14708.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 402 CG13110-RA 1..402 17..418 1910 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..480 17..418 1950 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350949 17..418 1950 99 Plus
Blast to na_te.dros performed on 2015-02-11 09:12:41 has no hits.

BS14708.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:32 Download gff for BS14708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 17..418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:39 Download gff for BS14708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..486 17..427 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:56 Download gff for BS14708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..486 17..427 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:56 Download gff for BS14708.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350955 17..427 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:39 Download gff for BS14708.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350955 17..427 98   Plus

BS14708.complete Sequence

434 bp assembled on 2006-11-01

GenBank Submission: FJ637766

> BS14708.complete
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGATAGAAGCTTTCTAGACCAT

BS14708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 402 CG13110-PA 1..402 17..418 1950 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..480 17..418 1950 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350949 17..418 1950 99 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:25 has no hits.

BS14708.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:11 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 1..402 17..418 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:58 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 72..479 17..427 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..480 17..418 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:11 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 72..479 17..427 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:17 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..480 17..418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:17 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350949 17..418 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for BS14708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350949 17..418 99   Plus

BS14708.pep Sequence

Translation from 16 to 417

> BS14708.pep
MLIPEVDMWNVSKSSRIHRLSIFNCDKPGLKVLDYAAVRGVDRFYLECQD
YRDYFKDPYNRVHKPIRFTSYAGKCDVKLDTDVEVLSEPTLWRIDRQPIV
YPIDYHSDMALGRRDCDHIKAFCSPAESLSFKR*

BS14708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 133 CG13110-PA 1..133 1..133 725 100 Plus
CG31347-PA 143 CG31347-PA 6..117 3..113 262 44.6 Plus
CG43796-PA 127 CG43796-PA 4..106 11..112 234 42.7 Plus
CG14391-PA 135 CG14391-PA 5..116 3..112 229 42 Plus