Clone Sequence Records
BS14709.3prime Sequence
781 bp (757 high quality bases) assembled on 2006-10-13
> BS14709.3prime
ATGGTCTAGAAAGCTTCTAGCTGAACCATCCCTTTTTGTTCATTGAATTC
CACTTGGCTATGTTCACCAAAATGGATGCCACACACTGGTCCTTGTCCCG
ATTTTGGCCGTAGTAATCGACAAACTCGCCATCGGGATTGACCAGGTACA
TGATGATGGTGTGATCCACAATATAATCGTTGTCCTCGTCCCGCGGTCCA
GCGCTGAAATAAACCCTGAAGGCCTTGCACACTTTGCGGATTTGTTCGAC
GGTTCCCGTGAGTCCCAGCAGTTTGGGGGAGAACTCTTTTACGTATTTGG
CCACCACCTCTTTGGAGTCACGTTCTGGGTCAACGGTGATAAAGATGGGC
TGCACTGCTGGCGTTTGCGGGGACTTTTCAACTTCATCGACGACGGCGGC
CATCTTCTCTAGCTCATCGGGACAAATATCCGGGCAGTGGGTGAAGCCAA
AATAGATGAGCAGCCACTTGCCTAAGAAGTCCTCCGATTTGCGAACAGCT
CCCTGCGAATCAACTAATTCCCAACTGCCGCCGATGGCTGCTTTTCCCAA
TTGCCGCTGACGCTCCTTCATTCTCGCCTCATCCTTCTCGCTCTTCACGT
ACAGCATGAAGCCCACTCCTCCGGCTCCAAGGGCTCCAATGACGGCCAGA
CTTCTCCAAGAGATCGGACCCTTGCCTTTAGTGGAATCTGCGGGAGCGGC
ATAATGACGAATTGCGGGCTGTTGTGCCCAGCGACGACAGCTGCCCACTA
AGCGTTGCAGGGAGCGGGACATGTCGACTGA
BS14709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8885-PA | 756 | CG8885-RA | 1..756 | 772..17 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..866 | 772..17 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 379..772 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 4968007..4968369 | 17..379 | 1815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:46:04 has no hits.
BS14709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:32 Download gff for
BS14709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:53 Download gff for
BS14709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 105..874 | 7..780 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:08 Download gff for
BS14709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 105..874 | 7..780 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:08 Download gff for
BS14709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4967999..4968368 | 7..378 | 98 | <- | Plus |
| 2L | 4968432..4968831 | 379..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:53 Download gff for
BS14709.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4967999..4968368 | 7..378 | 98 | <- | Plus |
| arm_2L | 4968432..4968831 | 379..780 | 99 | | Plus |
BS14709.5prime Sequence
785 bp (721 high quality bases) assembled on 2006-10-13
> BS14709.5prime
GAAGTTATCAGTCGACATGTCCCGCTCCCTGCAACGCTTAGTGGGCAGCT
GTCGTCGCTGGGCACAACAGCCCGCAATTCGTCATTATGCCGCTCCCGCA
GATTCCACTAAAGGCAAGGGTCCGATCTCTTGGAGAAGTCTGGCCGTCAT
TGGAGCCCTTGGAGCCGGAGGAGTGGGCTTCATGCTGTACGTGAAGAGCG
AGAAGGATGAGGCGAGAATGAAGGAGCGTCAGCGGCAATTGGGAAAAGCA
GCCATCGGCGGCAGTTGGGAATTAGTTGATTCGCAGGGAGCTGTTCGCAA
ATCGGAGGACTTCTTAGGCAAGTGGCTGCTCATCTATTTTGGCTTCACCC
ACTGCCCGGATATTTGTCCCGATGAGCTAGAGAAGATGGCCGCCGTCGTC
GATGAAGTTGAAAAGTCCCCGCAAACGCCAGCAGTGCAGCCCATCTTTAT
CACCGTTGACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAA
AAGAGTTCTCCCCCAAACTGCTGGGACTCACGGGAACCGTCGAACAAATC
CGCAAAGTGTGCAAGGCCTTCAGGGTTTATTTCAGCGCTGGACCGCGGGA
CGAGGACAACGATTATATTGTGGATCACACCATCATCATGTACCTGGTCA
ATCCCGATGGCGAGTTTGTCGATTACTACGGCCAAAATCGGGACAAGGAC
CAGTGTGTGGCATCCATTTTGGTGAACATAGCCAAGTGGAATTCAATGAA
CAAAAAGGGATGGTTCAGCTAGAAGCTTTCTAGAC
BS14709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8885-PA | 756 | CG8885-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..866 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 410..17 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4968007..4968369 | 772..410 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:41:32 has no hits.
BS14709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:33 Download gff for
BS14709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:22 Download gff for
BS14709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 11..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:10 Download gff for
BS14709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 11..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:10 Download gff for
BS14709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4967999..4968368 | 411..782 | 98 | <- | Minus |
| 2L | 4968432..4968830 | 11..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:22 Download gff for
BS14709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4967999..4968368 | 411..782 | 98 | <- | Minus |
| arm_2L | 4968432..4968830 | 11..410 | 99 | | Minus |
BS14709.complete Sequence
788 bp assembled on 2006-11-01
GenBank Submission: FJ637767
> BS14709.complete
GAAGTTATCAGTCGACATGTCCCGCTCCCTGCAACGCTTAGTGGGCAGCT
GTCGTCGCTGGGCACAACAGCCCGCAATTCGTCATTATGCCGCTCCCGCA
GATTCCACTAAAGGCAAGGGTCCGATCTCTTGGAGAAGTCTGGCCGTCAT
TGGAGCCCTTGGAGCCGGAGGAGTGGGCTTCATGCTGTACGTGAAGAGCG
AGAAGGATGAGGCGAGAATGAAGGAGCGTCAGCGGCAATTGGGAAAAGCA
GCCATCGGCGGCAGTTGGGAATTAGTTGATTCGCAGGGAGCTGTTCGCAA
ATCGGAGGACTTCTTAGGCAAGTGGCTGCTCATCTATTTTGGCTTCACCC
ACTGCCCGGATATTTGTCCCGATGAGCTAGAGAAGATGGCCGCCGTCGTC
GATGAAGTTGAAAAGTCCCCGCAAACGCCAGCAGTGCAGCCCATCTTTAT
CACCGTTGACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAA
AAGAGTTCTCCCCCAAACTGCTGGGACTCACGGGAACCGTCGAACAAATC
CGCAAAGTGTGCAAGGCCTTCAGGGTTTATTTCAGCGCTGGACCGCGGGA
CGAGGACAACGATTATATTGTGGATCACACCATCATCATGTACCTGGTCA
ATCCCGATGGCGAGTTTGTCGATTACTACGGCCAAAATCGGGACAAGGAC
CAGTGTGTGGCATCCATTTTGGTGAACATAGCCAAGTGGAATTCAATGAA
CAAAAAGGGATGGTTCAGCTAGAAGCTTTCTAGACCAT
BS14709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 756 | CG8885-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..866 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 410..17 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4968007..4968369 | 772..410 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:24:01 has no hits.
BS14709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:42 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:05 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 107..875 | 11..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:47 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 111..866 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:42 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 107..875 | 11..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:08 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 111..866 | 17..772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:08 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4968007..4968368 | 411..772 | 100 | <- | Minus |
| 2L | 4968432..4968825 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:47 Download gff for
BS14709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4968007..4968368 | 411..772 | 100 | <- | Minus |
| arm_2L | 4968432..4968825 | 17..410 | 100 | | Minus |
BS14709.pep Sequence
Translation from 16 to 771
> BS14709.pep
MSRSLQRLVGSCRRWAQQPAIRHYAAPADSTKGKGPISWRSLAVIGALGA
GGVGFMLYVKSEKDEARMKERQRQLGKAAIGGSWELVDSQGAVRKSEDFL
GKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVDPE
RDSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDNDY
IVDHTIIMYLVNPDGEFVDYYGQNRDKDQCVASILVNIAKWNSMNKKGWF
S*
BS14709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-PA | 251 | CG8885-PA | 1..251 | 1..251 | 1326 | 100 | Plus |
