Clone Sequence Records
BS14711.3prime Sequence
789 bp (714 high quality bases) assembled on 2006-10-13
> BS14711.3prime
ATGGTCTAGAAAGCTTCTAAGGATCTGGACACTCTGGTTGCTTGAGGATC
TCAATGCAGCATGGATTGGCGTCGATTTTGCACACCTCGCTCTCCGTCTC
CACCTCGCTGACATCGGTGAGATCGCACTCGCATGGGAAGCACTCCATCT
CGCCGCCCTCCTCGCCCTCGGCCTCTTCACCCTCTCCATACCAACTGATC
TTCTCCTCGCTGCGCATGCTCGGCTCAGTGGAGAGCGAGCAGACGGACAG
CTCGGAATCGGAAATGGCCAGAGGCACTGGCTCCTGCGGCAGCAGCGAAA
AGTCATACACGGCCATCTCCTGGGCGAACCATAGTGTTGGTTCCATTGGC
TCCGCTTCACCCATCTCGTCCTCCAAGCGCTCCTCGGCGTCCTCCATCTC
GTCTTCGTTGCTGATCGCCTTCATGTTGTAACTGGCGGGCAGGAAATAGC
CCAGCAGAAGGTATCGATTGTTGAAGCTAAACACGGCCGGTCCACTCGGG
TACAGGTTATCCCAAATTCCGTGAAGTATTGTGCACTTGTCCTCATTGCC
GATATACAGCTCGAAGGGACCCGTTCGCATGTTGCTGTTCCAGGTGGCCT
TCATTCTGACGGACAGGCAGCAGCCATCCTTTCCGCTGTTAAAGTGATAG
ATGCCCACCCCATGACGTTGTCCCTTGAACCAGTCACCCGAATAGTTGTC
CCCATTCACATACTTGTACCGGCCCTTGCCGTGCTTCAAGTTCTTTCGCC
AGTTGCCCTCGTACACGGATCCGTCCGGATAGATGAAAG
BS14711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 1035 | CG5458-RA | 265..1035 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16974-RB | 5528 | CG16974-RB | 4590..5360 | 17..787 | 3855 | 100 | Plus |
CG5458-RA | 1262 | CG5458-RA | 404..1174 | 787..17 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13184017..13184787 | 787..17 | 3855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:48:35 has no hits.
BS14711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for
BS14711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 264..1035 | 17..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:54 Download gff for
BS14711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16974-RB | 4590..5361 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:40 Download gff for
BS14711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 403..1174 | 17..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:40 Download gff for
BS14711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13184016..13184787 | 17..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:54 Download gff for
BS14711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13184016..13184787 | 17..789 | 99 | | Minus |
BS14711.5prime Sequence
806 bp (743 high quality bases) assembled on 2006-10-13
> BS14711.5prime
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGAA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
GCCTTT
BS14711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 1035 | CG5458-RA | 1..784 | 17..800 | 3895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1262 | CG5458-RA | 139..923 | 16..800 | 3910 | 99.9 | Plus |
CG16974-RB | 5528 | CG16974-RB | 4841..5528 | 800..113 | 3425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13183828..13184536 | 92..800 | 3530 | 99.9 | Plus |
2L | 23513712 | 2L | 13183588..13183663 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:19 has no hits.
BS14711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for
BS14711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:08 Download gff for
BS14711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..928 | 7..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:11 Download gff for
BS14711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..928 | 7..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:11 Download gff for
BS14711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13183580..13183663 | 7..91 | 96 | -> | Plus |
2L | 13183828..13184541 | 92..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:08 Download gff for
BS14711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13183580..13183663 | 7..91 | 96 | -> | Plus |
arm_2L | 13183828..13184541 | 92..806 | 99 | | Plus |
BS14711.complete Sequence
1067 bp assembled on 2006-11-01
GenBank Submission: FJ637768
> BS14711.complete
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGGA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
CCATTTCCGATTCCGAGCTGTCCGTCTGCTCGCTCTCCACTGAGCCGAGC
ATGCGCAGCGAGGAGAAGATCAGTTGGTATGGAGAGGGTGAAGAGGCCGA
GGGCGAGGAGGGCGGCGAGATGGAGTGCTTCCCATGCGAGTGCGATCTCA
CCGATGTCAGCGAGGTGGAGACGGAGAGCGAGGTGTGCAAAATCGACGCC
AATCCATGCTGCATTGAGATCCTCAAGCAACCAGAGTGTCCAGATCCTTA
GAAGCTTTCTAGACCAT
BS14711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1035 | CG5458-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1262 | CG5458-RA | 139..1174 | 16..1051 | 5180 | 100 | Plus |
CG16974-RB | 5528 | CG16974-RB | 4590..5528 | 1051..113 | 4695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13183828..13184787 | 92..1051 | 4800 | 100 | Plus |
2L | 23513712 | 2L | 13183588..13183663 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:02:20 has no hits.
BS14711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:36 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 1..1035 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:32 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1174 | 7..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:48 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 140..1174 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:36 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1174 | 7..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:51 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 140..1174 | 17..1051 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:51 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13183589..13183663 | 17..91 | 100 | -> | Plus |
2L | 13183828..13184787 | 92..1051 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:48 Download gff for
BS14711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13183589..13183663 | 17..91 | 100 | -> | Plus |
arm_2L | 13183828..13184787 | 92..1051 | 100 | | Plus |
BS14711.pep Sequence
Translation from 16 to 1050
> BS14711.pep
MAMTEMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQ
YDGNYRKGRRHGIGVYVFKDGSRYYGQYRCGKRCGRGIFIYPDGSVYEGN
WRKNLKHGKGRYKYVNGDNYSGDWFKGQRHGVGIYHFNSGKDGCCLSVRM
KATWNSNMRTGPFELYIGNEDKCTILHGIWDNLYPSGPAVFSFNNRYLLL
GYFLPASYNMKAISNEDEMEDAEERLEDEMGEAEPMEPTLWFAQEMAVYD
FSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISWYGEGEEAEGEEGG
EMECFPCECDLTDVSEVETESEVCKIDANPCCIEILKQPECPDP*
BS14711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 344 | CG5458-PA | 1..344 | 1..344 | 1905 | 100 | Plus |
CG30429-PA | 305 | CG30429-PA | 77..200 | 36..160 | 183 | 32.1 | Plus |
CG14490-PA | 197 | CG14490-PA | 24..171 | 30..180 | 182 | 32.1 | Plus |
CG30429-PA | 305 | CG30429-PA | 69..162 | 51..140 | 174 | 36.2 | Plus |
CG14490-PA | 197 | CG14490-PA | 42..164 | 25..141 | 170 | 34.1 | Plus |
rtp-PA | 198 | CG10233-PA | 47..157 | 33..143 | 159 | 33 | Plus |
CG30429-PA | 305 | CG30429-PA | 89..193 | 21..124 | 156 | 31.4 | Plus |
rtp-PA | 198 | CG10233-PA | 64..147 | 27..110 | 155 | 39.3 | Plus |