Clone BS14711 Report

Search the DGRC for BS14711

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG5458-RA
Protein status:BS14711.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14711.3prime Sequence

789 bp (714 high quality bases) assembled on 2006-10-13

> BS14711.3prime
ATGGTCTAGAAAGCTTCTAAGGATCTGGACACTCTGGTTGCTTGAGGATC
TCAATGCAGCATGGATTGGCGTCGATTTTGCACACCTCGCTCTCCGTCTC
CACCTCGCTGACATCGGTGAGATCGCACTCGCATGGGAAGCACTCCATCT
CGCCGCCCTCCTCGCCCTCGGCCTCTTCACCCTCTCCATACCAACTGATC
TTCTCCTCGCTGCGCATGCTCGGCTCAGTGGAGAGCGAGCAGACGGACAG
CTCGGAATCGGAAATGGCCAGAGGCACTGGCTCCTGCGGCAGCAGCGAAA
AGTCATACACGGCCATCTCCTGGGCGAACCATAGTGTTGGTTCCATTGGC
TCCGCTTCACCCATCTCGTCCTCCAAGCGCTCCTCGGCGTCCTCCATCTC
GTCTTCGTTGCTGATCGCCTTCATGTTGTAACTGGCGGGCAGGAAATAGC
CCAGCAGAAGGTATCGATTGTTGAAGCTAAACACGGCCGGTCCACTCGGG
TACAGGTTATCCCAAATTCCGTGAAGTATTGTGCACTTGTCCTCATTGCC
GATATACAGCTCGAAGGGACCCGTTCGCATGTTGCTGTTCCAGGTGGCCT
TCATTCTGACGGACAGGCAGCAGCCATCCTTTCCGCTGTTAAAGTGATAG
ATGCCCACCCCATGACGTTGTCCCTTGAACCAGTCACCCGAATAGTTGTC
CCCATTCACATACTTGTACCGGCCCTTGCCGTGCTTCAAGTTCTTTCGCC
AGTTGCCCTCGTACACGGATCCGTCCGGATAGATGAAAG

BS14711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-PA 1035 CG5458-RA 265..1035 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16974-RB 5528 CG16974-RB 4590..5360 17..787 3855 100 Plus
CG5458-RA 1262 CG5458-RA 404..1174 787..17 3855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13184017..13184787 787..17 3855 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:48:35 has no hits.

BS14711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for BS14711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5458-PA 264..1035 17..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:54 Download gff for BS14711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16974-RB 4590..5361 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:40 Download gff for BS14711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 403..1174 17..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:40 Download gff for BS14711.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13184016..13184787 17..789 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:54 Download gff for BS14711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13184016..13184787 17..789 99   Minus

BS14711.5prime Sequence

806 bp (743 high quality bases) assembled on 2006-10-13

> BS14711.5prime
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGAA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
GCCTTT

BS14711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-PA 1035 CG5458-RA 1..784 17..800 3895 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-RA 1262 CG5458-RA 139..923 16..800 3910 99.9 Plus
CG16974-RB 5528 CG16974-RB 4841..5528 800..113 3425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13183828..13184536 92..800 3530 99.9 Plus
2L 23513712 2L 13183588..13183663 16..91 380 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:01:19 has no hits.

BS14711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for BS14711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5458-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:08 Download gff for BS14711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 131..928 7..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:11 Download gff for BS14711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 131..928 7..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:11 Download gff for BS14711.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13183580..13183663 7..91 96 -> Plus
2L 13183828..13184541 92..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:08 Download gff for BS14711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13183580..13183663 7..91 96 -> Plus
arm_2L 13183828..13184541 92..806 99   Plus

BS14711.complete Sequence

1067 bp assembled on 2006-11-01

GenBank Submission: FJ637768

> BS14711.complete
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGGA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
CCATTTCCGATTCCGAGCTGTCCGTCTGCTCGCTCTCCACTGAGCCGAGC
ATGCGCAGCGAGGAGAAGATCAGTTGGTATGGAGAGGGTGAAGAGGCCGA
GGGCGAGGAGGGCGGCGAGATGGAGTGCTTCCCATGCGAGTGCGATCTCA
CCGATGTCAGCGAGGTGGAGACGGAGAGCGAGGTGTGCAAAATCGACGCC
AATCCATGCTGCATTGAGATCCTCAAGCAACCAGAGTGTCCAGATCCTTA
GAAGCTTTCTAGACCAT

BS14711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-RA 1035 CG5458-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-RA 1262 CG5458-RA 139..1174 16..1051 5180 100 Plus
CG16974-RB 5528 CG16974-RB 4590..5528 1051..113 4695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13183828..13184787 92..1051 4800 100 Plus
2L 23513712 2L 13183588..13183663 16..91 380 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:02:20 has no hits.

BS14711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:36 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:32 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 131..1174 7..1051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:48 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 140..1174 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:36 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 131..1174 7..1051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:51 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 140..1174 17..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:51 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13183589..13183663 17..91 100 -> Plus
2L 13183828..13184787 92..1051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:48 Download gff for BS14711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13183589..13183663 17..91 100 -> Plus
arm_2L 13183828..13184787 92..1051 100   Plus

BS14711.pep Sequence

Translation from 16 to 1050

> BS14711.pep
MAMTEMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQ
YDGNYRKGRRHGIGVYVFKDGSRYYGQYRCGKRCGRGIFIYPDGSVYEGN
WRKNLKHGKGRYKYVNGDNYSGDWFKGQRHGVGIYHFNSGKDGCCLSVRM
KATWNSNMRTGPFELYIGNEDKCTILHGIWDNLYPSGPAVFSFNNRYLLL
GYFLPASYNMKAISNEDEMEDAEERLEDEMGEAEPMEPTLWFAQEMAVYD
FSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISWYGEGEEAEGEEGG
EMECFPCECDLTDVSEVETESEVCKIDANPCCIEILKQPECPDP*

BS14711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-PA 344 CG5458-PA 1..344 1..344 1905 100 Plus
CG30429-PA 305 CG30429-PA 77..200 36..160 183 32.1 Plus
CG14490-PA 197 CG14490-PA 24..171 30..180 182 32.1 Plus
CG30429-PA 305 CG30429-PA 69..162 51..140 174 36.2 Plus
CG14490-PA 197 CG14490-PA 42..164 25..141 170 34.1 Plus
rtp-PA 198 CG10233-PA 47..157 33..143 159 33 Plus
CG30429-PA 305 CG30429-PA 89..193 21..124 156 31.4 Plus
rtp-PA 198 CG10233-PA 64..147 27..110 155 39.3 Plus