Clone Sequence Records
BS14712.3prime Sequence
745 bp (706 high quality bases) assembled on 2006-10-13
> BS14712.3prime
ATGGTCTAGAAAGCTTTCAACCATTTTTCTGCTTATACAAGGCGGATCCT
TGCCGCGCCAATTTGTCTGCCATTTCATTGCCCTCTATGCCCTTGTGGGC
CTCCACATAGTTCCATTTCACGGTGATGTTGTTCTCCTGAAGCAGTTTAT
CCAGTTCCTTGAAGTCAACAACGTTTTTTACAGGCTGATTGTTCTTTAGC
TTCCAATCCCTTTTTTTCCAACCCGCAACCCACAGCGTTATGGAGTTGAT
CAAAAACTGAGAGTCTGTGCTGATGCACAGCTTCTGTATTCCCAAGTCAA
GAGCTGTTTTAATGGCATGAATGGCCGCTTGTATTTCACCTACATTATTT
GTAACGCGTCCTTCCACGGGCTTGGCTGCGTTTAGCTGGTGATTCTTGCC
GAAATAAACGCCATAGCCGGCACAGGCGCCGGCTCGTCCGTTGCCTATGC
AGGAGCCATCTGTGTACACAATGACATAGCCCTCTGCATCGATTTCAAAC
TGGAAGGCACCCACTTGCTTGAGTCCTGTGGCTTCTGAGACCTGAGAGGC
ATGACGTGGGATCTTGTTCCGCTTATCGCCGCTGGTCGTGCCCTTCCGCT
TGCGATTGAGAATGTCTGGTAAATTGCTACTGTTAGATGGCTTTGGATCT
CCCTCAACCTCGTTCATGGCAGCATTCAGATCATCCTCGGCTAGGTCGTG
ATCCTCTTCGGGCCCCTCATCTGTGTACTTGGGGTTCTTATTCAC
BS14712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8729-PA | 1002 | rnh1-RA | 274..1002 | 745..17 | 3545 | 99.4 | Minus |
CG8729-PB | 945 | rnh1-RB | 343..945 | 619..17 | 2940 | 99.5 | Minus |
CG8729-PB | 945 | rnh1-RB | 274..342 | 745..677 | 320 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 305..1035 | 745..15 | 3595 | 99.5 | Minus |
rnh1-RB | 1051 | CG8729-RB | 374..978 | 619..15 | 2980 | 99.5 | Minus |
rnh1-RB | 1051 | CG8729-RB | 305..373 | 745..677 | 330 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7931285..7931555 | 113..383 | 1340 | 99.6 | Plus |
2R | 25286936 | 2R | 7931611..7931846 | 384..619 | 1150 | 99.2 | Plus |
2R | 25286936 | 2R | 7931127..7931225 | 15..113 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7932008..7932076 | 677..745 | 330 | 98.6 | Plus |
2R | 25286936 | 2R | 7931899..7931956 | 620..677 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:41 has no hits.
BS14712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for
BS14712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8729-PA | 274..1002 | 17..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:24 Download gff for
BS14712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 305..1045 | 7..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:50 Download gff for
BS14712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 305..1045 | 7..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:50 Download gff for
BS14712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931117..7931224 | 7..112 | 97 | <- | Plus |
2R | 7931285..7931555 | 113..383 | 99 | <- | Plus |
2R | 7931611..7931846 | 384..619 | 99 | <- | Plus |
2R | 7931899..7931955 | 620..676 | 100 | <- | Plus |
2R | 7932008..7932076 | 677..745 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:24 Download gff for
BS14712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3818622..3818729 | 7..112 | 97 | <- | Plus |
arm_2R | 3818790..3819060 | 113..383 | 99 | <- | Plus |
arm_2R | 3819116..3819351 | 384..619 | 99 | <- | Plus |
arm_2R | 3819404..3819460 | 620..676 | 100 | <- | Plus |
arm_2R | 3819513..3819581 | 677..745 | 98 | | Plus |
BS14712.5prime Sequence
843 bp (747 high quality bases) assembled on 2006-10-13
> BS14712.5prime
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAA
BS14712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8729-PA | 1002 | rnh1-RA | 1..827 | 17..843 | 4085 | 99.7 | Plus |
CG8729-PB | 945 | rnh1-RB | 343..770 | 416..843 | 2090 | 99.5 | Plus |
CG8729-PB | 945 | rnh1-RB | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 32..858 | 17..843 | 4105 | 99.8 | Plus |
rnh1-RB | 1051 | CG8729-RB | 374..801 | 416..843 | 2110 | 99.5 | Plus |
rnh1-RB | 1051 | CG8729-RB | 32..373 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7932008..7932349 | 358..17 | 1710 | 100 | Minus |
2R | 25286936 | 2R | 7931611..7931846 | 651..416 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 7931364..7931555 | 843..652 | 960 | 100 | Minus |
2R | 25286936 | 2R | 7931899..7931956 | 415..358 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:49:05 has no hits.
BS14712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:35 Download gff for
BS14712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8729-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:01 Download gff for
BS14712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 32..858 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:44 Download gff for
BS14712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 32..858 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:44 Download gff for
BS14712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931364..7931555 | 652..843 | 100 | <- | Minus |
2R | 7931611..7931846 | 416..651 | 99 | <- | Minus |
2R | 7931899..7931955 | 359..415 | 100 | <- | Minus |
2R | 7932008..7932349 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:01 Download gff for
BS14712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3819513..3819854 | 17..358 | 100 | | Minus |
arm_2R | 3818869..3819060 | 652..843 | 100 | <- | Minus |
arm_2R | 3819116..3819351 | 416..651 | 99 | <- | Minus |
arm_2R | 3819404..3819460 | 359..415 | 100 | <- | Minus |
BS14712.complete Sequence
1034 bp assembled on 2006-11-01
GenBank Submission: FJ637769
> BS14712.complete
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAACAATCAG
CCTGTAAAAAACGTTGTTGACTTCAAGGAACTGGATAAACTGCTTCAGGA
GAACAACATCACCGTGAAATGGAACTATGTGGAGGCCCACAAGGGCATAG
AGGGCAATGAAATGGCAGACAAATTGGCGCGGCAAGGATCCGCCTTGTAT
AAGCAGAAAAATGGTTGAAAGCTTTCTAGACCAT
BS14712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1002 | CG8729-PA | 1..1002 | 17..1018 | 4965 | 99.7 | Plus |
rnh1-RB | 945 | CG8729-PB | 343..945 | 416..1018 | 2970 | 99.5 | Plus |
rnh1-RB | 945 | CG8729-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 32..1035 | 17..1020 | 4975 | 99.7 | Plus |
rnh1-RB | 1051 | CG8729-RB | 374..978 | 416..1020 | 2980 | 99.5 | Plus |
rnh1-RB | 1051 | CG8729-RB | 32..373 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7932008..7932349 | 358..17 | 1710 | 100 | Minus |
2R | 25286936 | 2R | 7931285..7931555 | 922..652 | 1340 | 99.6 | Minus |
2R | 25286936 | 2R | 7931611..7931846 | 651..416 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 7931127..7931225 | 1020..922 | 495 | 100 | Minus |
2R | 25286936 | 2R | 7931899..7931956 | 415..358 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:46:12 has no hits.
BS14712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:23 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:20 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 38..1051 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:23 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 37..1032 | 22..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:24 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 38..1051 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:10 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 37..1032 | 22..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:10 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931130..7931224 | 923..1017 | 100 | <- | Minus |
2R | 7931285..7931555 | 652..922 | 99 | <- | Minus |
2R | 7931611..7931846 | 416..651 | 99 | <- | Minus |
2R | 7931899..7931955 | 359..415 | 100 | <- | Minus |
2R | 7932008..7932344 | 22..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:23 Download gff for
BS14712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3818790..3819060 | 652..922 | 99 | <- | Minus |
arm_2R | 3819116..3819351 | 416..651 | 99 | <- | Minus |
arm_2R | 3819404..3819460 | 359..415 | 100 | <- | Minus |
arm_2R | 3818635..3818729 | 923..1017 | 100 | <- | Minus |
arm_2R | 3819513..3819849 | 22..358 | 100 | | Minus |
BS14712.pep Sequence
Translation from 16 to 1017
> BS14712.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*
BS14712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-PA | 333 | CG8729-PA | 1..333 | 1..333 | 1775 | 100 | Plus |
rnh1-PB | 314 | CG8729-PB | 1..314 | 1..333 | 1647 | 94.3 | Plus |