Clone BS14712 Report

Search the DGRC for BS14712

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptrnh1-RA
Protein status:BS14712.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14712.3prime Sequence

745 bp (706 high quality bases) assembled on 2006-10-13

> BS14712.3prime
ATGGTCTAGAAAGCTTTCAACCATTTTTCTGCTTATACAAGGCGGATCCT
TGCCGCGCCAATTTGTCTGCCATTTCATTGCCCTCTATGCCCTTGTGGGC
CTCCACATAGTTCCATTTCACGGTGATGTTGTTCTCCTGAAGCAGTTTAT
CCAGTTCCTTGAAGTCAACAACGTTTTTTACAGGCTGATTGTTCTTTAGC
TTCCAATCCCTTTTTTTCCAACCCGCAACCCACAGCGTTATGGAGTTGAT
CAAAAACTGAGAGTCTGTGCTGATGCACAGCTTCTGTATTCCCAAGTCAA
GAGCTGTTTTAATGGCATGAATGGCCGCTTGTATTTCACCTACATTATTT
GTAACGCGTCCTTCCACGGGCTTGGCTGCGTTTAGCTGGTGATTCTTGCC
GAAATAAACGCCATAGCCGGCACAGGCGCCGGCTCGTCCGTTGCCTATGC
AGGAGCCATCTGTGTACACAATGACATAGCCCTCTGCATCGATTTCAAAC
TGGAAGGCACCCACTTGCTTGAGTCCTGTGGCTTCTGAGACCTGAGAGGC
ATGACGTGGGATCTTGTTCCGCTTATCGCCGCTGGTCGTGCCCTTCCGCT
TGCGATTGAGAATGTCTGGTAAATTGCTACTGTTAGATGGCTTTGGATCT
CCCTCAACCTCGTTCATGGCAGCATTCAGATCATCCTCGGCTAGGTCGTG
ATCCTCTTCGGGCCCCTCATCTGTGTACTTGGGGTTCTTATTCAC

BS14712.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8729-PA 1002 rnh1-RA 274..1002 745..17 3545 99.4 Minus
CG8729-PB 945 rnh1-RB 343..945 619..17 2940 99.5 Minus
CG8729-PB 945 rnh1-RB 274..342 745..677 320 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 305..1035 745..15 3595 99.5 Minus
rnh1-RB 1051 CG8729-RB 374..978 619..15 2980 99.5 Minus
rnh1-RB 1051 CG8729-RB 305..373 745..677 330 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7931285..7931555 113..383 1340 99.6 Plus
2R 25286936 2R 7931611..7931846 384..619 1150 99.2 Plus
2R 25286936 2R 7931127..7931225 15..113 495 100 Plus
2R 25286936 2R 7932008..7932076 677..745 330 98.6 Plus
2R 25286936 2R 7931899..7931956 620..677 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:41:41 has no hits.

BS14712.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:34 Download gff for BS14712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8729-PA 274..1002 17..745 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:24 Download gff for BS14712.3prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 305..1045 7..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:50 Download gff for BS14712.3prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 305..1045 7..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:50 Download gff for BS14712.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7931117..7931224 7..112 97 <- Plus
2R 7931285..7931555 113..383 99 <- Plus
2R 7931611..7931846 384..619 99 <- Plus
2R 7931899..7931955 620..676 100 <- Plus
2R 7932008..7932076 677..745 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:24 Download gff for BS14712.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3818622..3818729 7..112 97 <- Plus
arm_2R 3818790..3819060 113..383 99 <- Plus
arm_2R 3819116..3819351 384..619 99 <- Plus
arm_2R 3819404..3819460 620..676 100 <- Plus
arm_2R 3819513..3819581 677..745 98   Plus

BS14712.5prime Sequence

843 bp (747 high quality bases) assembled on 2006-10-13

> BS14712.5prime
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAA

BS14712.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8729-PA 1002 rnh1-RA 1..827 17..843 4085 99.7 Plus
CG8729-PB 945 rnh1-RB 343..770 416..843 2090 99.5 Plus
CG8729-PB 945 rnh1-RB 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 32..858 17..843 4105 99.8 Plus
rnh1-RB 1051 CG8729-RB 374..801 416..843 2110 99.5 Plus
rnh1-RB 1051 CG8729-RB 32..373 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7932008..7932349 358..17 1710 100 Minus
2R 25286936 2R 7931611..7931846 651..416 1150 99.2 Minus
2R 25286936 2R 7931364..7931555 843..652 960 100 Minus
2R 25286936 2R 7931899..7931956 415..358 290 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:49:05 has no hits.

BS14712.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:35 Download gff for BS14712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8729-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:01 Download gff for BS14712.5prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 32..858 17..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:44 Download gff for BS14712.5prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 32..858 17..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:44 Download gff for BS14712.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7931364..7931555 652..843 100 <- Minus
2R 7931611..7931846 416..651 99 <- Minus
2R 7931899..7931955 359..415 100 <- Minus
2R 7932008..7932349 17..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:01 Download gff for BS14712.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3819513..3819854 17..358 100   Minus
arm_2R 3818869..3819060 652..843 100 <- Minus
arm_2R 3819116..3819351 416..651 99 <- Minus
arm_2R 3819404..3819460 359..415 100 <- Minus

BS14712.complete Sequence

1034 bp assembled on 2006-11-01

GenBank Submission: FJ637769

> BS14712.complete
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAACAATCAG
CCTGTAAAAAACGTTGTTGACTTCAAGGAACTGGATAAACTGCTTCAGGA
GAACAACATCACCGTGAAATGGAACTATGTGGAGGCCCACAAGGGCATAG
AGGGCAATGAAATGGCAGACAAATTGGCGCGGCAAGGATCCGCCTTGTAT
AAGCAGAAAAATGGTTGAAAGCTTTCTAGACCAT

BS14712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1002 CG8729-PA 1..1002 17..1018 4965 99.7 Plus
rnh1-RB 945 CG8729-PB 343..945 416..1018 2970 99.5 Plus
rnh1-RB 945 CG8729-PB 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 32..1035 17..1020 4975 99.7 Plus
rnh1-RB 1051 CG8729-RB 374..978 416..1020 2980 99.5 Plus
rnh1-RB 1051 CG8729-RB 32..373 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7932008..7932349 358..17 1710 100 Minus
2R 25286936 2R 7931285..7931555 922..652 1340 99.6 Minus
2R 25286936 2R 7931611..7931846 651..416 1150 99.2 Minus
2R 25286936 2R 7931127..7931225 1020..922 495 100 Minus
2R 25286936 2R 7931899..7931956 415..358 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:46:12 has no hits.

BS14712.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:23 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 17..1018 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:20 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 38..1051 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:23 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 37..1032 22..1017 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:24 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 38..1051 17..1028 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:10 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 37..1032 22..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:10 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7931130..7931224 923..1017 100 <- Minus
2R 7931285..7931555 652..922 99 <- Minus
2R 7931611..7931846 416..651 99 <- Minus
2R 7931899..7931955 359..415 100 <- Minus
2R 7932008..7932344 22..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:23 Download gff for BS14712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3818790..3819060 652..922 99 <- Minus
arm_2R 3819116..3819351 416..651 99 <- Minus
arm_2R 3819404..3819460 359..415 100 <- Minus
arm_2R 3818635..3818729 923..1017 100 <- Minus
arm_2R 3819513..3819849 22..358 100   Minus

BS14712.pep Sequence

Translation from 16 to 1017

> BS14712.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*

BS14712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-PA 333 CG8729-PA 1..333 1..333 1775 100 Plus
rnh1-PB 314 CG8729-PB 1..314 1..333 1647 94.3 Plus