Clone BS14714 Report

Search the DGRC for BS14714

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG2887-RA
Protein status:BS14714.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14714.3prime Sequence

761 bp (759 high quality bases) assembled on 2006-10-13

> BS14714.3prime
ATGGTCTAGAAAGCTTTCAGTTTTGCAGAAGTCTGTCGAGCGAGGATGCG
AGTTCTTTGGATATGGCGTCTGGAAACTGGATGGAGAACCTGACGACGAT
GGAGCCGCGACGGGAATTATTAATGGAATCGGGCAATCCGTAGCCCAGAA
TGCGGCGCACGGATTTCGGACTGATTACCTCGCCCACGTCGGTCTTGAGT
TCCATCGGCCTGCCAAGAAGCGTCGGCACCATCACGTGTAAACCGCACAG
AGCATCCTTCAGCGAGATTTCGGCTGTGTACAGCAGATTGTTGCCATCGC
GGCGAAAGATTGGGTGTGGCTTGTCCCGGATTATAAACACGACGTTGGCG
GGCTCAAGGTTGGGCAGTTGAATACCCTCATTGGGAAAGCAGATCTTGGT
GCCAGCCTTACAGCCCGGAGGTATCTTGACAGTGAGAATTCTGTCATATT
GTACCCCATCAACGCCGTTCCTACCCGAAGCCCGGGAGATCTTCATGCGC
CTGTTGCACCCGTTGGCAATGTCCTCCAGAGCAACGTATATTACATGTTC
GATGCTTGACTGGGGTGACTGTTGTTCGCAACGACGTTTAGGCGCGCCCG
CTCCTCCACCCAACAGGACGTCATCGTCGCTGTCAAAATCGTTTTCGATA
TCCTCGAAGAACGTAGAATATGATTCGCTGTTGTCGAAGAAACGTCCAAA
GTTGGCCCGCGGGTTGTTCTGGCGACCACCGCCACTGCCACCGCCACTGC
CACTGCCACTG

BS14714.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-PA 1029 CG2887-RA 285..1029 761..17 3725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-RA 1234 CG2887-RA 355..1099 761..17 3725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10477395..10478139 17..761 3725 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:18:30 has no hits.

BS14714.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:36 Download gff for BS14714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-PA 285..1029 17..761 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:32 Download gff for BS14714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 355..1099 17..761 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:38 Download gff for BS14714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 355..1099 17..761 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:38 Download gff for BS14714.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10477395..10478139 17..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:32 Download gff for BS14714.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10371428..10372172 17..761 100   Plus

BS14714.5prime Sequence

856 bp (783 high quality bases) assembled on 2006-10-13

> BS14714.5prime
GAAGTTATCAGTCGACATGCCTAAAGACTACTACAAGATACTGGGCATCC
AGCGCACTGCCAATGATGGCGAAATCCGCAAGGCATATCATAAGCAAGCG
CTGCGCTACCATCCGGACAAAAACAAGAGCCCTCAGGCGGAGGAGATCTT
TAAGCAGGTGGCCAAGGCATATGAAGTCCTATCAGACAAAAAGAAGCGCG
GATCGTACGACTCCCGCAATGACAAGGGTACCCGACGCAATACCGCGAAT
CAAGGTAGCGGTTTCGGCGATGGAACGGCATTTGGTAGCTGTGGTGGTGG
CAGTGGCAGTGGCAGTGGCGGTGGCAGTGGCGGTGGTCGCCAGAACAACC
CGCGGGCCAACTTTGGACGTTTCTTCGACAACAGCGAATCATATTCTACG
TTCTTCGAGGATATCGAAAACGATTTTGACAGCGACGATGACGTCCTGTT
GGGTGGAGGAGCGGGCGCGCCTAAACGTCGTTGCGAACAACAGTCACCCC
AGTCAAGCATCGAACATGTAATATACGTTGCTCTGGAGGACATTGCCAAC
GGGTGCAACAGGCGCATGAAGATCTCCCGGGCTTCGGGTAGGAACGGCGT
TGATGGGGTACAATATGACAGAATTCTCACTGTCAAGATACCTCCGGGCT
GTAAGGCTGGCACCAAGATCTGCTTTCCCAATGAGGGTATTCAACTGCCC
AACCTTGAGCCCGCCAACGTCGTGTTTATAATCCGGGACAAGCCACACCC
AATCTTTCGCCGCGATGGCAACAATCTGCTGTACACAGCCGAAATCTCGC
TGAAGGATGCTCTGTGCGGTTTACACGTGATGGTGCCGACGCTTCTTGGC
AGGCCC

BS14714.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-PA 1029 CG2887-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-RA 1234 CG2887-RA 70..909 16..855 4200 100 Plus
DnaJ-1-RA 1916 CG10578-RA 358..535 23..200 245 75.8 Plus
DnaJ-1-RB 2161 CG10578-RB 603..780 23..200 245 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10477585..10478424 855..16 4200 100 Minus
3L 28110227 3L 5751410..5751587 200..23 245 75.8 Minus
Blast to na_te.dros performed on 2015-02-10 21:18:23 has no hits.

BS14714.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:36 Download gff for BS14714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-PA 1..839 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:47 Download gff for BS14714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 70..909 16..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:07 Download gff for BS14714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 70..909 16..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:07 Download gff for BS14714.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10477584..10478424 16..856 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:47 Download gff for BS14714.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10371617..10372457 16..856 99   Minus

BS14714.complete Sequence

1061 bp assembled on 2006-11-01

GenBank Submission: FJ637770

> BS14714.complete
GAAGTTATCAGTCGACATGCCTAAAGACTACTACAAGATACTGGGCATCC
AGCGCACTGCCAATGATGGCGAAATCCGCAAGGCATATCATAAGCAAGCG
CTGCGCTACCATCCGGACAAAAACAAGAGCCCTCAGGCGGAGGAGATCTT
TAAGCAGGTGGCCAAGGCATATGAAGTCCTATCAGACAAAAAGAAGCGCG
GATCGTACGACTCCCGCAATGACAAGGGTACCCGACGCAATACCGCGAAT
CAAGGTAGCGGTTTCGGCGATGGAACGGCATTTGGTAGCTGTGGTGGTGG
CAGTGGCAGTGGCAGTGGCGGTGGCAGTGGCGGTGGTCGCCAGAACAACC
CGCGGGCCAACTTTGGACGTTTCTTCGACAACAGCGAATCATATTCTACG
TTCTTCGAGGATATCGAAAACGATTTTGACAGCGACGATGACGTCCTGTT
GGGTGGAGGAGCGGGCGCGCCTAAACGTCGTTGCGAACAACAGTCACCCC
AGTCAAGCATCGAACATGTAATATACGTTGCTCTGGAGGACATTGCCAAC
GGGTGCAACAGGCGCATGAAGATCTCCCGGGCTTCGGGTAGGAACGGCGT
TGATGGGGTACAATATGACAGAATTCTCACTGTCAAGATACCTCCGGGCT
GTAAGGCTGGCACCAAGATCTGCTTTCCCAATGAGGGTATTCAACTGCCC
AACCTTGAGCCCGCCAACGTCGTGTTTATAATCCGGGACAAGCCACACCC
AATCTTTCGCCGCGATGGCAACAATCTGCTGTACACAGCCGAAATCTCGC
TGAAGGATGCTCTGTGCGGTTTACACGTGATGGTGCCGACGCTTCTTGGC
AGGCCGATGGAACTCAAGACCGACGTGGGCGAGGTAATCAGTCCGAAATC
CGTGCGCCGCATTCTGGGCTACGGATTGCCCGATTCCATTAATAATTCCC
GTCGCGGCTCCATCGTCGTCAGGTTCTCCATCCAGTTTCCAGACGCCATA
TCCAAAGAACTCGCATCCTCGCTCGACAGACTTCTGCAAAACTGAAAGCT
TTCTAGACCAT

BS14714.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-RA 1029 CG2887-PA 1..1029 17..1045 5145 100 Plus
DnaJ-1-RA 1005 CG10578-PA 7..184 23..200 245 75.8 Plus
DnaJ-1-RB 1005 CG10578-PB 7..184 23..200 245 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-RA 1234 CG2887-RA 70..1099 16..1045 5150 100 Plus
DnaJ-1-RA 1916 CG10578-RA 358..535 23..200 245 75.8 Plus
DnaJ-1-RB 2161 CG10578-RB 603..780 23..200 245 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10477395..10478424 1045..16 5150 100 Minus
3L 28110227 3L 5751410..5751587 200..23 245 75.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:32:49 has no hits.

BS14714.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:25 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 1..1029 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:18 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 70..1099 16..1045 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:21 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 71..1098 17..1044 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:25 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 70..1099 16..1045 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:30 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
CG2887-RA 71..1098 17..1044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:30 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
X 10477396..10478423 17..1044 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:21 Download gff for BS14714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10371429..10372456 17..1044 100   Minus

BS14714.pep Sequence

Translation from 16 to 1044

> BS14714.pep
MPKDYYKILGIQRTANDGEIRKAYHKQALRYHPDKNKSPQAEEIFKQVAK
AYEVLSDKKKRGSYDSRNDKGTRRNTANQGSGFGDGTAFGSCGGGSGSGS
GGGSGGGRQNNPRANFGRFFDNSESYSTFFEDIENDFDSDDDVLLGGGAG
APKRRCEQQSPQSSIEHVIYVALEDIANGCNRRMKISRASGRNGVDGVQY
DRILTVKIPPGCKAGTKICFPNEGIQLPNLEPANVVFIIRDKPHPIFRRD
GNNLLYTAEISLKDALCGLHVMVPTLLGRPMELKTDVGEVISPKSVRRIL
GYGLPDSINNSRRGSIVVRFSIQFPDAISKELASSLDRLLQN*

BS14714.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2887-PA 342 CG2887-PA 1..342 1..342 1793 100 Plus
DnaJ-1-PA 334 CG10578-PA 1..334 1..342 725 44.9 Plus
DnaJ-1-PB 334 CG10578-PB 1..334 1..342 725 44.9 Plus
CG5001-PC 346 CG5001-PC 1..335 1..329 659 41.7 Plus
CG5001-PD 350 CG5001-PD 1..339 1..329 655 41.2 Plus