Clone Sequence Records
BS14720.3prime Sequence
817 bp (716 high quality bases) assembled on 2006-10-13
> BS14720.3prime
ATGGTCTAGAAAGCTTCTAGTTTTGATTGATGAATCCCTCGGCGTCCAGA
AGAACATTGGGGAAATACTTGATAATTTTGGTGAAGTGCGGGAATTTTTG
CGTGTTGGCGAATGTAATCTCATTGATCTCCTGATACTGCTTTAAAATCG
TGATGAGTTCATCGGGAGGCACTGCATCCGCCACCAACCAGTGCTGGATG
GCGTAGTTTAGAGCATAGACCGGGAGTTTCATTAAACTGGGTTCGTGGAT
CAATGATGCGCCTTCCTCTATGATTTTCTCGATGCAAACGCGCTCCACAT
CGATGATGTTATGCCGGAATGCTAGGTCGAAGGCAGGAAAGATGCCATCC
AGAGGCAATTCCTGCTCCTTTAGTTTCTCAGCAAAGGAGCGAAGGAGCTC
CGGCATGTTGTACGCGCAGGACAGGATGAACATATCCCCCACCAGCTTCA
GCTGGACCAGCGGCGAGGTCACCTCGAAGGTGTATATGAACTCCAGGAAG
ATCTCCACGCTCTCGGGCGAAACCCCATTGATCTGGAGTACGCCGTTCCA
GTCCTTGTTCTGGTACACGTCCTGCTCCAGTTTGTCGGAGGCGGTGGCCA
GGAAGATCCGATGGCAGCCAAACTTCTTGTAGCACACACTGACCGCCGGC
TCATCGGATTGGGGGCAGTTGCTCAGGACGTGCACCTGGCAATCGGCATC
GGCTCCACTGCGAAAGTATTCCAGTCTGCGGTTTCTACTCGTAGCGCGTT
TGGACCCATCACTCGGAGAACCCAATGGTAAATTCTCCTCAACATCCGAT
GCAGCTGGGGTTCTGGG
BS14720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 939 | CG14262-RA | 139..939 | 817..17 | 3905 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 163..965 | 817..15 | 3955 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265268 | 278..817 | 2655 | 99.4 | Plus |
3R | 32079331 | 3R | 27264413..27264677 | 15..279 | 1310 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:34:23 has no hits.
BS14720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:39 Download gff for
BS14720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 139..939 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:03 Download gff for
BS14720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 163..972 | 8..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:26 Download gff for
BS14720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 163..972 | 8..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:26 Download gff for
BS14720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264406..27264675 | 8..277 | 98 | <- | Plus |
3R | 27264729..27265268 | 278..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:03 Download gff for
BS14720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090128..23090397 | 8..277 | 98 | <- | Plus |
arm_3R | 23090451..23090990 | 278..817 | 99 | | Plus |
BS14720.5prime Sequence
705 bp (704 high quality bases) assembled on 2006-10-13
> BS14720.5prime
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGA
BS14720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 939 | CG14262-RA | 1..689 | 17..705 | 3395 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 25..713 | 17..705 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265406 | 694..17 | 3360 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:34:36 has no hits.
BS14720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:40 Download gff for
BS14720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 1..688 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:06 Download gff for
BS14720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..712 | 9..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:28 Download gff for
BS14720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..712 | 9..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:28 Download gff for
BS14720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264729..27265411 | 9..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:06 Download gff for
BS14720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090451..23091133 | 9..694 | 99 | | Minus |
BS14720.complete Sequence
971 bp assembled on 2006-11-01
GenBank Submission: FJ637771
> BS14720.complete
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGAGGAAGGCGCATCATTGATCCACGAACCCAGTTTAATGAAACTCCC
GGTCTATGCTCTAAACTACGCCATCCAGCACTGGTTGGTGGCGGATGCAG
TGCCTCCCGATGAACTCATCACGATTTTAAAGCAGTATCAGGAGATCAAT
GAGATTACATTCGCCAACACGCAAAAATTCCCGCACTTCACCAAAATTAT
CAAGTATTTCCCCAATGTTCTTCTGGACGCCGAGGGATTCATCAATCAAA
ACTAGAAGCTTTCTAGACCAT
BS14720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 939 | CG14262-PA | 1..939 | 17..955 | 4650 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 25..965 | 17..957 | 4660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265406 | 694..17 | 3360 | 99.7 | Minus |
3R | 32079331 | 3R | 27264413..27264677 | 957..693 | 1310 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:06:29 has no hits.
BS14720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:05 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:41 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..972 | 9..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:30 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 25..963 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:06 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..972 | 9..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:01 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 25..963 | 17..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:01 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264415..27264675 | 695..955 | 99 | <- | Minus |
3R | 27264729..27265406 | 17..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:30 Download gff for
BS14720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090137..23090397 | 695..955 | 99 | <- | Minus |
arm_3R | 23090451..23091128 | 17..694 | 99 | | Minus |
BS14720.pep Sequence
Translation from 16 to 954
> BS14720.pep
MSDSEKEAAGKAHLGSNNRWSDLEEEEEGEANDQGGIQNLRPELVVPRTT
AASDVEENLPLGSPSDGSKRATSRNRRLEYFRSGADADCQVHVLSNCPQS
DEPAVSVCYKKFGCHRIFLATASDKLEQDVYQNKDWNGVLQINGVSPESV
EIFLEFIYTFEVTSPLVQLKLVGDMFILSCAYNMPELLRSFAEKLKEQEL
PLDGIFPAFDLAFRHNIIDVERVCIEKIIEEGASLIHEPSLMKLPVYALN
YAIQHWLVADAVPPDELITILKQYQEINEITFANTQKFPHFTKIIKYFPN
VLLDAEGFINQN*
BS14720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 312 | CG14262-PA | 1..312 | 1..312 | 1626 | 100 | Plus |
CG14260-PA | 249 | CG14260-PA | 6..237 | 76..309 | 262 | 29.6 | Plus |
CG14260-PB | 166 | CG14260-PB | 6..144 | 76..216 | 178 | 31.5 | Plus |