Clone BS14720 Report

Search the DGRC for BS14720

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG14262-RA
Protein status:BS14720.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14720.3prime Sequence

817 bp (716 high quality bases) assembled on 2006-10-13

> BS14720.3prime
ATGGTCTAGAAAGCTTCTAGTTTTGATTGATGAATCCCTCGGCGTCCAGA
AGAACATTGGGGAAATACTTGATAATTTTGGTGAAGTGCGGGAATTTTTG
CGTGTTGGCGAATGTAATCTCATTGATCTCCTGATACTGCTTTAAAATCG
TGATGAGTTCATCGGGAGGCACTGCATCCGCCACCAACCAGTGCTGGATG
GCGTAGTTTAGAGCATAGACCGGGAGTTTCATTAAACTGGGTTCGTGGAT
CAATGATGCGCCTTCCTCTATGATTTTCTCGATGCAAACGCGCTCCACAT
CGATGATGTTATGCCGGAATGCTAGGTCGAAGGCAGGAAAGATGCCATCC
AGAGGCAATTCCTGCTCCTTTAGTTTCTCAGCAAAGGAGCGAAGGAGCTC
CGGCATGTTGTACGCGCAGGACAGGATGAACATATCCCCCACCAGCTTCA
GCTGGACCAGCGGCGAGGTCACCTCGAAGGTGTATATGAACTCCAGGAAG
ATCTCCACGCTCTCGGGCGAAACCCCATTGATCTGGAGTACGCCGTTCCA
GTCCTTGTTCTGGTACACGTCCTGCTCCAGTTTGTCGGAGGCGGTGGCCA
GGAAGATCCGATGGCAGCCAAACTTCTTGTAGCACACACTGACCGCCGGC
TCATCGGATTGGGGGCAGTTGCTCAGGACGTGCACCTGGCAATCGGCATC
GGCTCCACTGCGAAAGTATTCCAGTCTGCGGTTTCTACTCGTAGCGCGTT
TGGACCCATCACTCGGAGAACCCAATGGTAAATTCTCCTCAACATCCGAT
GCAGCTGGGGTTCTGGG

BS14720.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-PA 939 CG14262-RA 139..939 817..17 3905 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-RA 1004 CG14262-RA 163..965 817..15 3955 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27264729..27265268 278..817 2655 99.4 Plus
3R 32079331 3R 27264413..27264677 15..279 1310 99.6 Plus
Blast to na_te.dros performed on 2015-02-06 10:34:23 has no hits.

BS14720.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:39 Download gff for BS14720.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-PA 139..939 17..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:03 Download gff for BS14720.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 163..972 8..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:26 Download gff for BS14720.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 163..972 8..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:26 Download gff for BS14720.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27264406..27264675 8..277 98 <- Plus
3R 27264729..27265268 278..817 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:03 Download gff for BS14720.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23090128..23090397 8..277 98 <- Plus
arm_3R 23090451..23090990 278..817 99   Plus

BS14720.5prime Sequence

705 bp (704 high quality bases) assembled on 2006-10-13

> BS14720.5prime
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGA

BS14720.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-PA 939 CG14262-RA 1..689 17..705 3395 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-RA 1004 CG14262-RA 25..713 17..705 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27264729..27265406 694..17 3360 99.7 Minus
Blast to na_te.dros performed on 2015-02-06 10:34:36 has no hits.

BS14720.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:40 Download gff for BS14720.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-PA 1..688 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:06 Download gff for BS14720.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 20..712 9..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:28 Download gff for BS14720.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 20..712 9..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:28 Download gff for BS14720.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27264729..27265411 9..694 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:06 Download gff for BS14720.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23090451..23091133 9..694 99   Minus

BS14720.complete Sequence

971 bp assembled on 2006-11-01

GenBank Submission: FJ637771

> BS14720.complete
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGAGGAAGGCGCATCATTGATCCACGAACCCAGTTTAATGAAACTCCC
GGTCTATGCTCTAAACTACGCCATCCAGCACTGGTTGGTGGCGGATGCAG
TGCCTCCCGATGAACTCATCACGATTTTAAAGCAGTATCAGGAGATCAAT
GAGATTACATTCGCCAACACGCAAAAATTCCCGCACTTCACCAAAATTAT
CAAGTATTTCCCCAATGTTCTTCTGGACGCCGAGGGATTCATCAATCAAA
ACTAGAAGCTTTCTAGACCAT

BS14720.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-RA 939 CG14262-PA 1..939 17..955 4650 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-RA 1004 CG14262-RA 25..965 17..957 4660 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27264729..27265406 694..17 3360 99.7 Minus
3R 32079331 3R 27264413..27264677 957..693 1310 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:06:29 has no hits.

BS14720.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:05 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:41 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 20..972 9..964 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:30 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 25..963 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:06 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 20..972 9..964 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:01 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
CG14262-RA 25..963 17..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:01 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27264415..27264675 695..955 99 <- Minus
3R 27264729..27265406 17..694 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:30 Download gff for BS14720.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23090137..23090397 695..955 99 <- Minus
arm_3R 23090451..23091128 17..694 99   Minus

BS14720.pep Sequence

Translation from 16 to 954

> BS14720.pep
MSDSEKEAAGKAHLGSNNRWSDLEEEEEGEANDQGGIQNLRPELVVPRTT
AASDVEENLPLGSPSDGSKRATSRNRRLEYFRSGADADCQVHVLSNCPQS
DEPAVSVCYKKFGCHRIFLATASDKLEQDVYQNKDWNGVLQINGVSPESV
EIFLEFIYTFEVTSPLVQLKLVGDMFILSCAYNMPELLRSFAEKLKEQEL
PLDGIFPAFDLAFRHNIIDVERVCIEKIIEEGASLIHEPSLMKLPVYALN
YAIQHWLVADAVPPDELITILKQYQEINEITFANTQKFPHFTKIIKYFPN
VLLDAEGFINQN*

BS14720.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14262-PA 312 CG14262-PA 1..312 1..312 1626 100 Plus
CG14260-PA 249 CG14260-PA 6..237 76..309 262 29.6 Plus
CG14260-PB 166 CG14260-PB 6..144 76..216 178 31.5 Plus