Clone Sequence Records
BS14722.5prime Sequence
717 bp (657 high quality bases) assembled on 2006-10-13
> BS14722.5prime
GAAGTTATCAGTCGACATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTT
GCACTTTAGTTTCGACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTG
CTTTCCCTGCCGGATGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGA
TGTGGCACAGCTGGCCAAGATAGTTCTTCCATCACCACATGAAACTCGCG
TAATTGGCGGCCATGTGACCACAAATGCCAAGTTGGGAGGATACCTAACA
GCCTTGCTTTATGAAGACGATTTTGTTTGTGGCGGTACATTGCTCAACGA
AAACATCGTCCTGACGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGA
GCGAATGGATTGTGGCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATT
CGACGCCATGTTAAGGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGA
CATGAATATGGATGTAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTA
AAAACATCGGAACACTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTA
GAACTGGTGGTTTCCGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCC
CCACAACTTACTACGTAACGGAGACAGTGCCAATTATTCACAAAAAGAAC
TTGTCGCGCTGGCTATCAGCCCACGGCTAAAATAACCGACAGTATGATAT
GGTGCTGCAGTGCTGGG
BS14722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 879 | CG11037-RA | 1..601 | 17..617 | 3005 | 100 | Plus |
CG11037-PA | 879 | CG11037-RA | 634..683 | 652..701 | 225 | 98 | Plus |
CG11037-PA | 879 | CG11037-RA | 606..634 | 623..651 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 3..700 | 17..717 | 3400 | 99.3 | Plus |
CG10588-RB | 3727 | CG10588-RB | 3678..3718 | 717..676 | 185 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961384 | 680..17 | 3175 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:02:27 has no hits.
BS14722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:42 Download gff for
BS14722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 1..698 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:17 Download gff for
BS14722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..700 | 16..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:24 Download gff for
BS14722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..700 | 16..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:24 Download gff for
BS14722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960611..20960650 | 677..717 | 97 | <- | Minus |
3L | 20960727..20961384 | 17..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:17 Download gff for
BS14722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953711..20953750 | 677..717 | 97 | <- | Minus |
arm_3L | 20953827..20954484 | 17..676 | 99 | | Minus |
BS14722.3prime Sequence
723 bp (577 high quality bases) assembled on 2006-10-13
> BS14722.3prime
ATGGTCTAGAAAGCTTTTATCGTTTTGCTAGCAAAGCTTTAATGCTTTTC
TCGATAAAAGGCTTCACGTACATAACATCCGTGTAGACGCCAGGATAACG
GTTGCTAGCACATCCAATGCCAAAGGACACTATGCCACACACCTGCTTTT
TGAACACCAACGGCCCACCTGAGTCAAAGGTGCACGCATCCTTACGTCCC
AGCACTGCAGCACATATCATACTGTCGGTTATTTTAGCCGTGGGCTGATA
GGCAGCGCGACAGTTCTTTTTGTGAATAATTGGCACTGTCACCGTACGTA
GTAAGTTGTGGGGCCCACGTCCTCGGGGAGCGGTCATGCCCCATCCGGAA
ACCACCAGTTCTACGCCTGGCTTAAGGCTCACCGAACATAAGCTCAGTGT
TCCGATGTTTTTAGCCTTCAATGGAGTTTTCAGCAGTACCACTGCTACAT
CCATATTCATGTCGTCCTCTCGAAATTGCTCGGACAGGATGAAGTCCTTA
ACATGGCGTCGAATACCCTTTTGATTGAGATTCGAAATGCCGGCAGCCAC
AATCCATTCGCTCGCCTTCATTCGACCCAGAAAACAGTGAGCCGCCGTCA
GGACGATGTTTTCATTGAGCAATGTACCGCCACAAACAAAATCGTCTTCA
TAAAGCAAGGCTGTTAGGTATCCTCCCAACTTGGCATTTGTGGTCACATG
GCCGCCAATTACGCGAGTTTCAT
BS14722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 879 | CG11037-RA | 173..879 | 723..17 | 3510 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 175..882 | 723..16 | 3525 | 99.9 | Minus |
CG10588-RB | 3727 | CG10588-RB | 3496..3718 | 16..238 | 1115 | 100 | Plus |
CG10587-RA | 866 | CG10587-RA | 560..839 | 298..19 | 500 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961212 | 234..723 | 2420 | 99.6 | Plus |
3L | 28110227 | 3L | 20960429..20960651 | 16..238 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 20961564..20961776 | 19..231 | 420 | 79.8 | Plus |
3L | 28110227 | 3L | 20955805..20955968 | 30..193 | 340 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:18:56 has no hits.
BS14722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:41 Download gff for
BS14722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 173..879 | 17..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:38 Download gff for
BS14722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 175..895 | 7..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:44 Download gff for
BS14722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 175..895 | 7..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:44 Download gff for
BS14722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960416..20960650 | 7..237 | 98 | <- | Plus |
3L | 20960727..20961212 | 238..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:38 Download gff for
BS14722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953516..20953750 | 7..237 | 98 | <- | Plus |
arm_3L | 20953827..20954312 | 238..723 | 99 | | Plus |
BS14722.complete Sequence
911 bp assembled on 2006-11-01
GenBank Submission: FJ637772
> BS14722.complete
GAAGTTATCAGTCGACATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTT
GCACTTTAGTTTCGACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTG
CTTTCCCTGCCGGATGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGA
TGTGGCACAGCTGGCCAAGATAGTTCTTCCATCACCACATGAAACTCGCG
TAATTGGCGGCCATGTGACCACAAATGCCAAGTTGGGAGGATACCTAACA
GCCTTGCTTTATGAAGACGATTTTGTTTGTGGCGGTACATTGCTCAACGA
AAACATCGTCCTGACGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGA
GCGAATGGATTGTGGCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATT
CGACGCCATGTTAAGGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGA
CATGAATATGGATGTAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTA
AAAACATCGGAACACTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTA
GAACTGGTGGTTTCCGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCC
CCACAACTTACTACGTACGGTGACAGTGCCAATTATTCACAAAAAGAACT
GTCGCGCTGCCTATCAGCCCACGGCTAAAATAACCGACAGTATGATATGT
GCTGCAGTGCTGGGACGTAAGGATGCGTGCACCTTTGACTCAGGTGGGCC
GTTGGTGTTCAAAAAGCAGGTGTGTGGCATAGTGTCCTTTGGCATTGGAT
GTGCTAGCAACCGTTATCCTGGCGTCTACACGGATGTTATGTACGTGAAG
CCTTTTATCGAGAAAAGCATTAAAGCTTTGCTAGCAAAACGATAAAAGCT
TTCTAGACCAT
BS14722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 879 | CG11037-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG10587-RA | 831 | CG10587-PA | 550..829 | 614..893 | 500 | 78.6 | Plus |
CG10587-RC | 870 | CG10587-PC | 656..868 | 681..893 | 420 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 3..882 | 17..896 | 4400 | 100 | Plus |
CG10588-RB | 3727 | CG10588-RB | 3496..3718 | 896..674 | 1115 | 100 | Minus |
CG10587-RA | 866 | CG10587-RA | 560..839 | 614..893 | 500 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961384 | 678..17 | 3295 | 99.8 | Minus |
3L | 28110227 | 3L | 20960429..20960651 | 896..674 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 20961564..20961776 | 893..681 | 420 | 79.8 | Minus |
3L | 28110227 | 3L | 20955805..20955968 | 882..719 | 340 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:49 has no hits.
BS14722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:53 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:42 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..895 | 16..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:33 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 3..879 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:53 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..895 | 16..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:00 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 3..879 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:00 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960432..20960650 | 675..893 | 100 | <- | Minus |
3L | 20960727..20961384 | 17..674 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:33 Download gff for
BS14722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953532..20953750 | 675..893 | 100 | <- | Minus |
arm_3L | 20953827..20954484 | 17..674 | 100 | | Minus |
BS14722.pep Sequence
Translation from 16 to 894
> BS14722.pep
MEWHLVCCVLACTLVSTQVYGQEQEKIVLSLPDESGQPGKNLTLDVAQLA
KIVLPSPHETRVIGGHVTTNAKLGGYLTALLYEDDFVCGGTLLNENIVLT
AAHCFLGRMKASEWIVAAGISNLNQKGIRRHVKDFILSEQFREDDMNMDV
AVVLLKTPLKAKNIGTLSLCSVSLKPGVELVVSGWGMTAPRGRGPHNLLR
TVTVPIIHKKNCRAAYQPTAKITDSMICAAVLGRKDACTFDSGGPLVFKK
QVCGIVSFGIGCASNRYPGVYTDVMYVKPFIEKSIKALLAKR*
BS14722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 292 | CG11037-PA | 1..292 | 1..292 | 1523 | 100 | Plus |
CG10587-PA | 276 | CG10587-PA | 1..276 | 1..292 | 908 | 61.3 | Plus |
CG10587-PC | 289 | CG10587-PC | 1..289 | 1..292 | 884 | 58.7 | Plus |
Sems-PA | 275 | CG10586-PA | 23..273 | 41..291 | 871 | 66.5 | Plus |
CG10587-PD | 225 | CG10587-PD | 1..205 | 1..221 | 585 | 53.8 | Plus |