Clone BS14725 Report

Search the DGRC for BS14725

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG11068-RA
Protein status:BS14725.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14725.3prime Sequence

769 bp (691 high quality bases) assembled on 2006-10-13

> BS14725.3prime
ATGGTCTAGAAAGCTTTTAGGACTTTAAGGGCTTGTACATCATGAGACGC
CGACGAACACATCCGATGGCCTCTTCCCAGCTGTTCGAGGACAGCAGATC
CTCATCCTTGGCCAAACGCTTTGCCTTGGAGGCGATGCCTTTGCGTTTGA
TCGTCTTCTTTTTCGTCAGCTTGGAAATTCCGGTTGGCAGTTTATCCGGT
TGCGATTTGCCGGCTTCAACCGTTTCGGGTTTCTTGGTTCGATTGCATTT
ACCCGGATTCCGTAACCGTAAGCTCTTCTTCATGTCCACACTGGCCATTG
ACAGAATCTGCTGAATGGATCGAACACGCGTAACGGCCGGTGGCGTAAAA
CTACGTATCCGTCGACCGGATGATGGTGATACCCTGGAAAATTTACGATT
CGGCTCCGGTGGCACGCGCATAGCTGCCTCCTTGGGCGGCAGATCCAATA
GATTGTCGTACTTGGGACGACGCTCATTCAGCTGCGTCTTTAGACGGGAC
AACTTGGGCGGCGGCTTGTAGGACTCCAGGGTGTAGCGGGTGCTCTGCTT
GTTGCCACCCACCGAGGAGCGGCCCAGGGACCACAGACCCTTGCTCTCCT
TCTGGAATGCTCGGTAGATCAGGTGACGTGGAACAGGTATCGGTAGTTCT
GCGTGACGTTGCGAATCGTATAGCTCACGCTGTCGCAATGCTAAGTCCTG
GCCAAGTTAATGCCGCTCGTTCCAGACCCTCGTCGATGCTGCAATTGTGC
ATGATGCACAATTCGCGAA

BS14725.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-PA 900 CG11068-RA 230..900 687..17 3355 100 Minus
CG11068-PA 900 CG11068-RA 149..230 769..688 410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-RA 1270 CG11068-RA 334..1086 769..16 3745 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13955744..13956390 662..16 3235 100 Minus
X 23542271 X 13955569..13955675 769..662 490 99.1 Minus
Blast to na_te.dros performed 2015-02-08 12:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 2777..2803 682..656 108 88.9 Minus

BS14725.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:44 Download gff for BS14725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-PA 151..900 17..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:29 Download gff for BS14725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 319..1080 7..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:07 Download gff for BS14725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 334..1095 7..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:07 Download gff for BS14725.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13955569..13955675 662..769 99 -> Minus
X 13955745..13956399 7..661 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:29 Download gff for BS14725.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13849602..13849708 662..769 99 -> Minus
arm_X 13849778..13850432 7..661 99   Minus

BS14725.5prime Sequence

845 bp (745 high quality bases) assembled on 2006-10-13

> BS14725.5prime
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGGCAAGGATGAGGATCTGCTGTCCT

BS14725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-PA 900 CG11068-RA 1..829 17..845 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-RA 1270 CG11068-RA 186..1014 17..845 4130 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13955744..13956318 271..845 2860 99.8 Plus
X 23542271 X 13955421..13955675 17..271 1275 100 Plus
Blast to na_te.dros performed 2015-02-03 06:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 2777..2803 251..277 108 88.9 Plus

BS14725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:44 Download gff for BS14725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:09 Download gff for BS14725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 166..999 8..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:49 Download gff for BS14725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 181..1014 8..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:49 Download gff for BS14725.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13955416..13955675 8..271 98 -> Plus
X 13955745..13956318 272..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:09 Download gff for BS14725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13849449..13849708 8..271 98 -> Plus
arm_X 13849778..13850351 272..845 99   Plus

BS14725.complete Sequence

932 bp assembled on 2006-11-01

GenBank Submission: FJ637773

> BS14725.complete
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGCCAAGGATGAGGATCTGCTGTCCTCGAAC
AGCTGGGAAGAGGCCATCGGATGTGTTCGTCGGCGTCTCATGATGTACAA
GCCCTTAAAGTCCTAAAAGCTTTCTAGACCAT

BS14725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-RA 900 CG11068-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-RA 1270 CG11068-RA 186..1086 17..917 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13955744..13956390 271..917 3235 100 Plus
X 23542271 X 13955421..13955675 17..271 1275 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:33:34 has no hits.

BS14725.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:06 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:57 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 166..1080 8..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:04 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 171..1068 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:06 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 166..1080 8..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:48 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
CG11068-RA 186..1083 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:48 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
X 13955421..13955675 17..271 100 -> Plus
X 13955745..13956387 272..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:04 Download gff for BS14725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13849454..13849708 17..271 100 -> Plus
arm_X 13849778..13850420 272..914 100   Plus

BS14725.pep Sequence

Translation from 16 to 915

> BS14725.pep
MAKDQEGNTYQPTVPESTEDQKREQRARLIKALSRFKPRDASPLQFYNCV
RELCIMHNCSIDEGLERAALTWPGLSMRQRELYDSQRHAELPIPVPRHLI
YRAFQKESKGLWSLGRSSVGGNKQSTRYTLESYKPPPKLSRLKTQLNERR
PKYDNLLDLPPKEAAMRVPPEPNRKFSRVSPSSGRRIRSFTPPAVTRVRS
IQQILSMASVDMKKSLRLRNPGKCNRTKKPETVEAGKSQPDKLPTGISKL
TKKKTIKRKGIASKAKRLAKDEDLLSSNSWEEAIGCVRRRLMMYKPLKS*

BS14725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11068-PA 299 CG11068-PA 1..299 1..299 1549 100 Plus