Clone Sequence Records
BS14725.3prime Sequence
769 bp (691 high quality bases) assembled on 2006-10-13
> BS14725.3prime
ATGGTCTAGAAAGCTTTTAGGACTTTAAGGGCTTGTACATCATGAGACGC
CGACGAACACATCCGATGGCCTCTTCCCAGCTGTTCGAGGACAGCAGATC
CTCATCCTTGGCCAAACGCTTTGCCTTGGAGGCGATGCCTTTGCGTTTGA
TCGTCTTCTTTTTCGTCAGCTTGGAAATTCCGGTTGGCAGTTTATCCGGT
TGCGATTTGCCGGCTTCAACCGTTTCGGGTTTCTTGGTTCGATTGCATTT
ACCCGGATTCCGTAACCGTAAGCTCTTCTTCATGTCCACACTGGCCATTG
ACAGAATCTGCTGAATGGATCGAACACGCGTAACGGCCGGTGGCGTAAAA
CTACGTATCCGTCGACCGGATGATGGTGATACCCTGGAAAATTTACGATT
CGGCTCCGGTGGCACGCGCATAGCTGCCTCCTTGGGCGGCAGATCCAATA
GATTGTCGTACTTGGGACGACGCTCATTCAGCTGCGTCTTTAGACGGGAC
AACTTGGGCGGCGGCTTGTAGGACTCCAGGGTGTAGCGGGTGCTCTGCTT
GTTGCCACCCACCGAGGAGCGGCCCAGGGACCACAGACCCTTGCTCTCCT
TCTGGAATGCTCGGTAGATCAGGTGACGTGGAACAGGTATCGGTAGTTCT
GCGTGACGTTGCGAATCGTATAGCTCACGCTGTCGCAATGCTAAGTCCTG
GCCAAGTTAATGCCGCTCGTTCCAGACCCTCGTCGATGCTGCAATTGTGC
ATGATGCACAATTCGCGAA
BS14725.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 900 | CG11068-RA | 230..900 | 687..17 | 3355 | 100 | Minus |
CG11068-PA | 900 | CG11068-RA | 149..230 | 769..688 | 410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 334..1086 | 769..16 | 3745 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956390 | 662..16 | 3235 | 100 | Minus |
X | 23542271 | X | 13955569..13955675 | 769..662 | 490 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-08 12:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2777..2803 | 682..656 | 108 | 88.9 | Minus |
BS14725.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:44 Download gff for
BS14725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 151..900 | 17..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:29 Download gff for
BS14725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 319..1080 | 7..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:07 Download gff for
BS14725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 334..1095 | 7..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:07 Download gff for
BS14725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955569..13955675 | 662..769 | 99 | -> | Minus |
X | 13955745..13956399 | 7..661 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:29 Download gff for
BS14725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849602..13849708 | 662..769 | 99 | -> | Minus |
arm_X | 13849778..13850432 | 7..661 | 99 | | Minus |
BS14725.5prime Sequence
845 bp (745 high quality bases) assembled on 2006-10-13
> BS14725.5prime
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGGCAAGGATGAGGATCTGCTGTCCT
BS14725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 900 | CG11068-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 186..1014 | 17..845 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956318 | 271..845 | 2860 | 99.8 | Plus |
X | 23542271 | X | 13955421..13955675 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2777..2803 | 251..277 | 108 | 88.9 | Plus |
BS14725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:44 Download gff for
BS14725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:09 Download gff for
BS14725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..999 | 8..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:49 Download gff for
BS14725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 181..1014 | 8..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:49 Download gff for
BS14725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955416..13955675 | 8..271 | 98 | -> | Plus |
X | 13955745..13956318 | 272..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:09 Download gff for
BS14725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849449..13849708 | 8..271 | 98 | -> | Plus |
arm_X | 13849778..13850351 | 272..845 | 99 | | Plus |
BS14725.complete Sequence
932 bp assembled on 2006-11-01
GenBank Submission: FJ637773
> BS14725.complete
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGCCAAGGATGAGGATCTGCTGTCCTCGAAC
AGCTGGGAAGAGGCCATCGGATGTGTTCGTCGGCGTCTCATGATGTACAA
GCCCTTAAAGTCCTAAAAGCTTTCTAGACCAT
BS14725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 900 | CG11068-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 186..1086 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956390 | 271..917 | 3235 | 100 | Plus |
X | 23542271 | X | 13955421..13955675 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:34 has no hits.
BS14725.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:06 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:57 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..1080 | 8..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:04 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 171..1068 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:06 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..1080 | 8..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:48 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 186..1083 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:48 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955421..13955675 | 17..271 | 100 | -> | Plus |
X | 13955745..13956387 | 272..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:04 Download gff for
BS14725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849454..13849708 | 17..271 | 100 | -> | Plus |
arm_X | 13849778..13850420 | 272..914 | 100 | | Plus |
BS14725.pep Sequence
Translation from 16 to 915
> BS14725.pep
MAKDQEGNTYQPTVPESTEDQKREQRARLIKALSRFKPRDASPLQFYNCV
RELCIMHNCSIDEGLERAALTWPGLSMRQRELYDSQRHAELPIPVPRHLI
YRAFQKESKGLWSLGRSSVGGNKQSTRYTLESYKPPPKLSRLKTQLNERR
PKYDNLLDLPPKEAAMRVPPEPNRKFSRVSPSSGRRIRSFTPPAVTRVRS
IQQILSMASVDMKKSLRLRNPGKCNRTKKPETVEAGKSQPDKLPTGISKL
TKKKTIKRKGIASKAKRLAKDEDLLSSNSWEEAIGCVRRRLMMYKPLKS*
BS14725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 299 | CG11068-PA | 1..299 | 1..299 | 1549 | 100 | Plus |