Clone Sequence Records
BS14742.3prime Sequence
771 bp (724 high quality bases) assembled on 2006-10-13
> BS14742.3prime
ATGGTCTAGAAAGCTTTCAGTTCATCTGCGTCGATATACGGGCCATATTT
CTGGTCATGGTAACCTGATCGTTAGATATTTTGACCAGGCCCTGCGATCG
CATATACCTCTCCATTTCTAAACTAGCTTTTTTTGCGTAACGCACACTTT
TGTCGTCAACCTCCTGGTTTGCATTTGGGGCCGCCATCATCACATCGCTC
ATTTTGCGGCCGTATTTCGCAATGGTGTACTCCCCCTCCTGGGAAATCTT
GCGTCGCTCTGCGAAACTCAGCTGCGGCTCCTGGAATTCCTCGCTAATCG
AGCACAACGTGCTGTCGATCTGGGTTAACCGCGGGCTCACACCATCACCG
ACCAGGTCTCCATCTGGCGGTGCTCCGGGGCGGTGTAAAAACTCCGATTC
TCGACTTTCCGCGGGCGTTGCCAGTAGGACCTTCCTTTTCCCCTTTAACC
TCTTCGGCTTCACCAGGTTTGGCATTGAATGTTCGCTCATATCGGTTGTT
TTCCATAACATTTCGTTTATGTCGGTCAGCCGCCGGCCCAGTACCCTGGG
ATTCAAGGCCACGCCTTTTTTTGGATGCGGAGTGCCAACGGCAACTATAT
CCTTGATACTCCTAGTCAGCGACTGGCGACGAAATACGGATACAGAAGGC
TTAGATTTTGGCAGGGTTTTCGACCTATGAGAGCTCCCATCGCTGATACT
TGGACTTCCGTCGTCCGGCCTTTCCGGTCTTTCTGGCCTTTCCGAGCGTG
AATTGTTTCAATTATCAGAAC
BS14742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 1032 | CG15025-RA | 278..1032 | 771..17 | 3700 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 421..1175 | 771..17 | 3730 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489808..19490442 | 17..651 | 3160 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19490574..19490695 | 650..771 | 580 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:44 has no hits.
BS14742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:58 Download gff for
BS14742.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 278..1032 | 17..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:00 Download gff for
BS14742.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 421..1182 | 10..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:13 Download gff for
BS14742.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 421..1182 | 10..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:13 Download gff for
BS14742.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19490574..19490695 | 650..771 | 98 | | Plus |
| 3R | 19489801..19490440 | 10..649 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:00 Download gff for
BS14742.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315523..15316162 | 10..649 | 99 | <- | Plus |
| arm_3R | 15316296..15316417 | 650..771 | 98 | | Plus |
BS14742.5prime Sequence
669 bp (668 high quality bases) assembled on 2006-10-13
> BS14742.5prime
GAAGTTATCAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAG
AAATTGGGAGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTG
AATCTGGTTGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAA
ATTCAAATCCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAA
TGAAGTCCTCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGA
GTTGATGCCAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGA
TAATCGAAACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGG
ACGACGGAAGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACC
CTGCCAAAATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGAC
TAGGAGTATCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAG
GCGTGGCCTTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAAC
GAAATGTTATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCT
GGTGAAGCCGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGC
CCGCGGAAAGTCGAGAATC
BS14742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 1032 | CG15025-RA | 1..653 | 17..669 | 3215 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..796 | 17..669 | 3235 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19490574..19490972 | 415..17 | 1980 | 99.7 | Minus |
| 3R | 32079331 | 3R | 19490187..19490442 | 669..414 | 1265 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:04:20 has no hits.
BS14742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:55:58 Download gff for
BS14742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 1..653 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:29 Download gff for
BS14742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..796 | 10..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:13 Download gff for
BS14742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..796 | 10..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:13 Download gff for
BS14742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19490187..19490440 | 416..669 | 99 | <- | Minus |
| 3R | 19490574..19490976 | 10..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:29 Download gff for
BS14742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315909..15316162 | 416..669 | 99 | <- | Minus |
| arm_3R | 15316296..15316698 | 10..415 | 99 | | Minus |
BS14742.complete Sequence
1064 bp assembled on 2006-11-01
GenBank Submission: FJ638863
> BS14742.complete
GAAGTTATCAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAG
AAATTGGGAGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTG
AATCTGGTTGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAA
ATTCAAATCCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAA
TGAAGTCCTCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGA
GTTGATGCCAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGA
TAATCGAAACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGG
ACGACGGAAGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACC
CTGCCAAAATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGAC
TAGGAGTATCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAG
GCGTGGCCTTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAAC
GAAATGTTATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCT
GGTGAAGCCGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGC
CCGCGGAAAGTCGAGAATCGGAGTTTTTACACCGCCCCGGAGCACCGCCA
GATGGAGACCTGGTCGGTGATGGTGTGAGCCCGCGGTTAACCCAGATCGA
CAGCACGTTGTGCTCGATTAGCGAGGAATTCCAGGAGCCGCAGCTGAGTT
TCGCAGAGCGACGCAAGATTTCCCAGGAGGGGGAGTACACCATTGCGAAA
TACGGCCGCAAAATGAGCGATGTGATGATGGCGGCCCCAAATGCAAACCA
GGAGGTTGACGACAAAAGTGTGCGTTACGCAAAAAAAGCTAGTTTAGAAA
TGGAGAGGTATATGCGATCGCAGGGCCTGGTCAAAATATCTAACGATCAG
GTTACCATGACCAGAAATATGGCCCGTATATCGACGCAGATGAACTGAAA
GCTTTCTAGACCAT
BS14742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1032 | CG15025-PA | 1..1032 | 17..1048 | 5130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..1175 | 17..1048 | 5130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489808..19490442 | 1048..414 | 3160 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19490574..19490972 | 415..17 | 1980 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:31 has no hits.
BS14742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:26 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 1..1032 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:20 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..1182 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:46 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 144..1174 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:26 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..1182 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:51 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 144..1174 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:51 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19489809..19490440 | 416..1047 | 99 | <- | Minus |
| 3R | 19490574..19490972 | 17..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:46 Download gff for
BS14742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315531..15316162 | 416..1047 | 99 | <- | Minus |
| arm_3R | 15316296..15316694 | 17..415 | 99 | | Minus |
BS14742.pep Sequence
Translation from 16 to 1047
> BS14742.pep
MRNSKKDSFREEIGSGTRRPHNSLNDPLNLVDRELSVLLRIPKLKFKSVE
PLPIASRDYGLMKSSNKSSTPYPRAQQGVDASLLKARLIMRTGSDNRNNS
RSERPERPERPDDGSPSISDGSSHRSKTLPKSKPSVSVFRRQSLTRSIKD
IVAVGTPHPKKGVALNPRVLGRRLTDINEMLWKTTDMSEHSMPNLVKPKR
LKGKRKVLLATPAESRESEFLHRPGAPPDGDLVGDGVSPRLTQIDSTLCS
ISEEFQEPQLSFAERRKISQEGEYTIAKYGRKMSDVMMAAPNANQEVDDK
SVRYAKKASLEMERYMRSQGLVKISNDQVTMTRNMARISTQMN*
BS14742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 343 | CG15025-PA | 1..343 | 1..343 | 1741 | 100 | Plus |
