Clone BS14746 Report

Search the DGRC for BS14746

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG8517-RA
Protein status:BS14746.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14746.5prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS14746.5prime
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CTAGAAGCTTTCTAGACC

BS14746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-PA 438 CG8517-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 732 CG8517-RA 99..537 17..455 2195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19714405..19714673 187..455 1345 100 Plus
2R 25286936 2R 19714174..19714346 17..189 865 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:20:15 has no hits.

BS14746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:00 Download gff for BS14746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:04 Download gff for BS14746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..537 17..455 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:01 Download gff for BS14746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..537 17..455 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:01 Download gff for BS14746.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19714174..19714346 17..189 100 -> Plus
2R 19714408..19714673 190..455 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:04 Download gff for BS14746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15601679..15601851 17..189 100 -> Plus
arm_2R 15601913..15602178 190..455 100   Plus

BS14746.complete Sequence

470 bp assembled on 2006-11-01

GenBank Submission: FJ637776

> BS14746.complete
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CTAGAAGCTTTCTAGACCAT

BS14746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 438 CG8517-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 732 CG8517-RA 99..537 17..455 2195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19714405..19714673 187..455 1345 100 Plus
2R 25286936 2R 19714174..19714346 17..189 865 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:15:43 has no hits.

BS14746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:29 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:23 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..537 17..455 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:25 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..536 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:29 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..537 17..455 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:02 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..536 17..454 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:02 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19714408..19714672 190..454 100   Plus
2R 19714174..19714346 17..189 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:25 Download gff for BS14746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15601913..15602177 190..454 100   Plus
arm_2R 15601679..15601851 17..189 100 -> Plus

BS14746.pep Sequence

Translation from 16 to 453

> BS14746.pep
MSSYRRLFRAKRLMNLMKANRGMTSTGKQPIFDVETRKDFEQRVINSDRP
VVVDFHASWCCPCKALAPRLENVVSEQEGRVRLARVDIDEHGELALDYNV
GSVPSLVVISNGKVVNRMVGLQTSEYLRKWLHKAVPHPPPEDTEN*

BS14746.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-PA 145 CG8517-PA 1..145 1..145 761 100 Plus
CG8993-PA 142 CG8993-PA 14..138 11..135 347 52 Plus
TrxT-PB 157 CG3315-PB 2..104 31..133 201 36.5 Plus
TrxT-PA 157 CG3315-PA 2..104 31..133 201 36.5 Plus
CG3719-PA 160 CG3719-PA 53..151 34..133 195 35 Plus