Clone Sequence Records
BS14746.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS14746.5prime
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CTAGAAGCTTTCTAGACC
BS14746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-PA | 438 | CG8517-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 732 | CG8517-RA | 99..537 | 17..455 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19714405..19714673 | 187..455 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 19714174..19714346 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:15 has no hits.
BS14746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:00 Download gff for
BS14746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-PA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:04 Download gff for
BS14746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..537 | 17..455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:01 Download gff for
BS14746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..537 | 17..455 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:01 Download gff for
BS14746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19714174..19714346 | 17..189 | 100 | -> | Plus |
2R | 19714408..19714673 | 190..455 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:04 Download gff for
BS14746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15601679..15601851 | 17..189 | 100 | -> | Plus |
arm_2R | 15601913..15602178 | 190..455 | 100 | | Plus |
BS14746.complete Sequence
470 bp assembled on 2006-11-01
GenBank Submission: FJ637776
> BS14746.complete
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CTAGAAGCTTTCTAGACCAT
BS14746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 438 | CG8517-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 732 | CG8517-RA | 99..537 | 17..455 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19714405..19714673 | 187..455 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 19714174..19714346 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:15:43 has no hits.
BS14746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:29 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:23 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..537 | 17..455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:25 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..536 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:29 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..537 | 17..455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:02 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..536 | 17..454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:02 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19714408..19714672 | 190..454 | 100 | | Plus |
2R | 19714174..19714346 | 17..189 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:25 Download gff for
BS14746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15601913..15602177 | 190..454 | 100 | | Plus |
arm_2R | 15601679..15601851 | 17..189 | 100 | -> | Plus |
BS14746.pep Sequence
Translation from 16 to 453
> BS14746.pep
MSSYRRLFRAKRLMNLMKANRGMTSTGKQPIFDVETRKDFEQRVINSDRP
VVVDFHASWCCPCKALAPRLENVVSEQEGRVRLARVDIDEHGELALDYNV
GSVPSLVVISNGKVVNRMVGLQTSEYLRKWLHKAVPHPPPEDTEN*
BS14746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-PA | 145 | CG8517-PA | 1..145 | 1..145 | 761 | 100 | Plus |
CG8993-PA | 142 | CG8993-PA | 14..138 | 11..135 | 347 | 52 | Plus |
TrxT-PB | 157 | CG3315-PB | 2..104 | 31..133 | 201 | 36.5 | Plus |
TrxT-PA | 157 | CG3315-PA | 2..104 | 31..133 | 201 | 36.5 | Plus |
CG3719-PA | 160 | CG3719-PA | 53..151 | 34..133 | 195 | 35 | Plus |