Clone Sequence Records
BS14758.3prime Sequence
480 bp (480 high quality bases) assembled on 2006-10-13
> BS14758.3prime
ATGGTCTAGAAAGCTTTTAGACATCCATGTTGCGTGATCTTTTCGGCGGA
CCCCTGTCCAATGTTTGTTTGATCGACTTGAGCAGACCAGGTATCAGGTT
TATGTACTTGTCCACACAGTTGTTCGTGCAACTCTCAAACATGTGCTGGG
ATCGGGACATGTCCCGGTCACTCGGATTGCTGGGCATCTGAGACCGCGCA
TCGCTGTTGCAATCCCTAACGCAGTTTTGAAGTCTATTCTGGAATTGGCC
CAGCTCGTGCTGCAGGAAATCCTGGGCATCCATCAGGGGACCGGCGCACT
TCTCGATGCAGTTCTGTACGCTCTCCAGCGTCCCTCGATCATCGTCGCAG
CAGCGGGCGGCACAGCGGTGCATCGTGGACTGCATTCTGCGCAAGTGGGT
GCGGTACATGTCCTCGATCATTTCGCTAATGGCGCCCTCCAAGCGCTTTT
TTTGTTGCTCCACCATGTCGACTGATAACT
BS14758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 450 | CG5327-RA | 1..450 | 466..17 | 2200 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..513 | 466..17 | 2220 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616638 | 215..17 | 965 | 99 | Minus |
2R | 25286936 | 2R | 18616195..18616362 | 381..214 | 840 | 100 | Minus |
2R | 25286936 | 2R | 18616051..18616137 | 466..380 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:48:42 has no hits.
BS14758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:08 Download gff for
BS14758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 17..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:43 Download gff for
BS14758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 17..478 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:31 Download gff for
BS14758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 17..478 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:31 Download gff for
BS14758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616039..18616137 | 380..478 | 94 | -> | Minus |
2R | 18616197..18616361 | 215..379 | 100 | -> | Minus |
2R | 18616441..18616638 | 17..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:43 Download gff for
BS14758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503544..14503642 | 380..478 | 94 | -> | Minus |
arm_2R | 14503702..14503866 | 215..379 | 100 | -> | Minus |
arm_2R | 14503946..14504143 | 17..214 | 98 | | Minus |
BS14758.5prime Sequence
480 bp (480 high quality bases) assembled on 2006-10-13
> BS14758.5prime
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCTAAAAGCTTTCTAGACC
BS14758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 450 | CG5327-RA | 1..450 | 17..466 | 2200 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..513 | 17..466 | 2220 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616638 | 268..466 | 965 | 99 | Plus |
2R | 25286936 | 2R | 18616195..18616362 | 102..269 | 840 | 100 | Plus |
2R | 25286936 | 2R | 18616051..18616137 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:46:55 has no hits.
BS14758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:08 Download gff for
BS14758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:59 Download gff for
BS14758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:17 Download gff for
BS14758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:17 Download gff for
BS14758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616441..18616638 | 269..466 | 98 | | Plus |
2R | 18616039..18616137 | 5..103 | 94 | -> | Plus |
2R | 18616197..18616361 | 104..268 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:59 Download gff for
BS14758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503544..14503642 | 5..103 | 94 | -> | Plus |
arm_2R | 14503702..14503866 | 104..268 | 100 | -> | Plus |
arm_2R | 14503946..14504143 | 269..466 | 98 | | Plus |
BS14758.complete Sequence
482 bp assembled on 2006-11-01
GenBank Submission: FJ637778
> BS14758.complete
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCTAAAAGCTTTCTAGACCAT
BS14758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 450 | CG5327-PA | 1..450 | 17..466 | 2220 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..513 | 17..466 | 2220 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616638 | 268..466 | 965 | 99 | Plus |
2R | 25286936 | 2R | 18616195..18616362 | 102..269 | 840 | 100 | Plus |
2R | 25286936 | 2R | 18616051..18616137 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:04 has no hits.
BS14758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:12 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:05 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:31 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 64..511 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:12 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:26 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 64..511 | 17..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:26 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616051..18616137 | 17..103 | 100 | -> | Plus |
2R | 18616197..18616361 | 104..268 | 100 | -> | Plus |
2R | 18616441..18616636 | 269..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:31 Download gff for
BS14758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503556..14503642 | 17..103 | 100 | -> | Plus |
arm_2R | 14503702..14503866 | 104..268 | 100 | -> | Plus |
arm_2R | 14503946..14504141 | 269..464 | 98 | | Plus |
BS14758.pep Sequence
Translation from 16 to 465
> BS14758.pep
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDV*
BS14758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 149 | CG5327-PA | 1..149 | 1..149 | 800 | 100 | Plus |
CG5323-PA | 146 | CG5323-PA | 1..140 | 1..140 | 424 | 47.1 | Plus |
CG12661-PB | 131 | CG12661-PB | 8..130 | 2..139 | 260 | 32.6 | Plus |
CG12661-PA | 131 | CG12661-PA | 8..130 | 2..139 | 260 | 32.6 | Plus |