Clone BS14758 Report

Search the DGRC for BS14758

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG5327-RA
Protein status:BS14758.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14758.3prime Sequence

480 bp (480 high quality bases) assembled on 2006-10-13

> BS14758.3prime
ATGGTCTAGAAAGCTTTTAGACATCCATGTTGCGTGATCTTTTCGGCGGA
CCCCTGTCCAATGTTTGTTTGATCGACTTGAGCAGACCAGGTATCAGGTT
TATGTACTTGTCCACACAGTTGTTCGTGCAACTCTCAAACATGTGCTGGG
ATCGGGACATGTCCCGGTCACTCGGATTGCTGGGCATCTGAGACCGCGCA
TCGCTGTTGCAATCCCTAACGCAGTTTTGAAGTCTATTCTGGAATTGGCC
CAGCTCGTGCTGCAGGAAATCCTGGGCATCCATCAGGGGACCGGCGCACT
TCTCGATGCAGTTCTGTACGCTCTCCAGCGTCCCTCGATCATCGTCGCAG
CAGCGGGCGGCACAGCGGTGCATCGTGGACTGCATTCTGCGCAAGTGGGT
GCGGTACATGTCCTCGATCATTTCGCTAATGGCGCCCTCCAAGCGCTTTT
TTTGTTGCTCCACCATGTCGACTGATAACT

BS14758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 450 CG5327-RA 1..450 466..17 2200 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..513 466..17 2220 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616638 215..17 965 99 Minus
2R 25286936 2R 18616195..18616362 381..214 840 100 Minus
2R 25286936 2R 18616051..18616137 466..380 435 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:48:42 has no hits.

BS14758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:08 Download gff for BS14758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 17..466 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:43 Download gff for BS14758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 17..478 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:31 Download gff for BS14758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 17..478 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:31 Download gff for BS14758.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18616039..18616137 380..478 94 -> Minus
2R 18616197..18616361 215..379 100 -> Minus
2R 18616441..18616638 17..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:43 Download gff for BS14758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503544..14503642 380..478 94 -> Minus
arm_2R 14503702..14503866 215..379 100 -> Minus
arm_2R 14503946..14504143 17..214 98   Minus

BS14758.5prime Sequence

480 bp (480 high quality bases) assembled on 2006-10-13

> BS14758.5prime
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCTAAAAGCTTTCTAGACC

BS14758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 450 CG5327-RA 1..450 17..466 2200 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..513 17..466 2220 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616638 268..466 965 99 Plus
2R 25286936 2R 18616195..18616362 102..269 840 100 Plus
2R 25286936 2R 18616051..18616137 17..103 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:46:55 has no hits.

BS14758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:08 Download gff for BS14758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:59 Download gff for BS14758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:17 Download gff for BS14758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..466 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:17 Download gff for BS14758.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18616441..18616638 269..466 98   Plus
2R 18616039..18616137 5..103 94 -> Plus
2R 18616197..18616361 104..268 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:59 Download gff for BS14758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503544..14503642 5..103 94 -> Plus
arm_2R 14503702..14503866 104..268 100 -> Plus
arm_2R 14503946..14504143 269..466 98   Plus

BS14758.complete Sequence

482 bp assembled on 2006-11-01

GenBank Submission: FJ637778

> BS14758.complete
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCTAAAAGCTTTCTAGACCAT

BS14758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 450 CG5327-PA 1..450 17..466 2220 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..513 17..466 2220 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616638 268..466 965 99 Plus
2R 25286936 2R 18616195..18616362 102..269 840 100 Plus
2R 25286936 2R 18616051..18616137 17..103 435 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:39:04 has no hits.

BS14758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:12 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:05 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..466 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:31 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 64..511 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:12 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:26 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 64..511 17..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:26 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18616051..18616137 17..103 100 -> Plus
2R 18616197..18616361 104..268 100 -> Plus
2R 18616441..18616636 269..464 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:31 Download gff for BS14758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503556..14503642 17..103 100 -> Plus
arm_2R 14503702..14503866 104..268 100 -> Plus
arm_2R 14503946..14504141 269..464 98   Plus

BS14758.pep Sequence

Translation from 16 to 465

> BS14758.pep
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDV*

BS14758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 149 CG5327-PA 1..149 1..149 800 100 Plus
CG5323-PA 146 CG5323-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 260 32.6 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 260 32.6 Plus