Clone Sequence Records
BS14769.3prime Sequence
757 bp (714 high quality bases) assembled on 2006-10-13
> BS14769.3prime
ATGGTCTAGAAAGCTTTCATTTGCAGGCGGCCAGCTGGTCACTCAAGCTG
ATGACCTGCTCCGTCAGCACGCTGATTTGCTCCTCGTAGTTAATACGCGT
CGTAGTCAACTCCTCTTCGAGCATTTGCAGGGCTCCACCCAAACTGGCCA
ACTGATCGTCCTTGGCCTTAAGTTCGTGCGTTGCGTTCTCCAGGCAGTTT
TGCAGGTGCTGAACCTCCAGCTCGTAGGATCGCAACTTGGATTCCGCTTG
CACTTTCAGTCGCATCAGATCCTCGAACTTCTTGCTGAACACACTGTAGA
TGAGCTGCTCCTTGGTGGGCGGTTCGGGGGGATCCTGCAGCGAATCCCGC
GCCCGCTGGCTGCCTTTCGCCTCCGACTCTGCCGGTCGAACGGTGACGCC
CGCCGCCGCCGTGCTGCAGCTGCACGTGCTGAGATCCTTGCTGGGGTTCG
AGACAAATGCTTGATGCAGCTTGGCCACTTCGAATTGAGCCCTCCAATGC
GCCGCCTCCTTCTCGAGCAGCGCAATGCGATCCTCGGAGGTGAGTTGGTT
GCTATTCGACTGCTGCTGGAGATTGTGTAGAGGAGTAGTATCGCTGCCGG
TGGCGCTCAGTGCGTCCTCGCTGCCAAGCATGCTGGCCGCATCAACCAGC
TTTTGTTTCCAGCTCGCTGTTCCTGTGCTGCAGCGTTTCCACCTCCTTCC
TGAGTCGCTTCTCCAGTTCGTTCTGATCGCCGATGGCGTTTCTCCCGCTT
CTGTTCC
BS14769.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-PA | 1221 | CG6607-RA | 585..1221 | 653..17 | 3185 | 100 | Minus |
CG6607-PA | 1221 | CG6607-RA | 504..587 | 735..652 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-RA | 1514 | CG6607-RA | 613..1351 | 757..17 | 3640 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24528981..24529503 | 629..107 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 24528802..24528928 | 757..629 | 530 | 97.7 | Minus |
3R | 32079331 | 3R | 24529562..24529652 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:51:17 has no hits.
BS14769.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:15 Download gff for
BS14769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-PA | 483..1221 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:53 Download gff for
BS14769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 613..1353 | 13..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:53 Download gff for
BS14769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 613..1353 | 13..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:53 Download gff for
BS14769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24528802..24528928 | 629..757 | 97 | -> | Minus |
3R | 24528982..24529503 | 107..628 | 100 | -> | Minus |
3R | 24529563..24529654 | 13..106 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:53 Download gff for
BS14769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20354524..20354650 | 629..757 | 97 | -> | Minus |
arm_3R | 20354704..20355225 | 107..628 | 100 | -> | Minus |
arm_3R | 20355285..20355376 | 13..106 | 97 | | Minus |
BS14769.5prime Sequence
803 bp (705 high quality bases) assembled on 2006-10-13
> BS14769.5prime
GAAGTTATCAGTCGACATGGCAGAGAAATCGCTAGCCATGGATGGCACGG
TGCCGGAGGCCAAGTACCAGAAATTGGCCACAGAATACTCAAAGCTGCGG
GCACAAGCGACGGTGCTAAAGAAGGCGGTGCTGGAGGAGCAGTCCAAGGA
GGCCAGTCTGCGGGAGCAACTGCAGCAGTACGCCACCTCGTTGCGCCGTA
CGGAGCAGGAGGTGGACTCGCTGGGCTTTCGCAACAAGCAGCTGGAGTCG
CGAGTTTCGCAGCTGCAGCAGGAAATCTCGGTGCACGAGCAGCCCAAAAA
GAAGGACAAGGATTCTGGCGGCAGGCGGGGCGTGCAGAGCAATAGCCGCC
CAGATGCCGATCCATCATTGGATGCCGCTCAGGAAGCCCTCATCTTCGAG
GAACTGCAGAAGAAAATCATGGAGAATGCGCAGCTGACGTCATTGATTGA
CGACAAGCAAAGGGATCTGCTGCTGCACACGGAGCGCATAGCATCGTTGG
AACAGAAGCTGGAGAAACGCATCGGCGATCAGAACGAACTGGAGAAGCGA
CTCAGGAAGGAGGTGGAAACGCTGCAGCACAGGAACAGCGAGCTGGAAAC
AAAGCTGGTTGATGCGGCCAGCATGCTTGGCAGCGAGGACGCACTGAGCG
CCACCGGCAGCGATACTACTCCTCTACACAATCTCCAGCAGCAGTCGAAT
AGCAACCAACTCACCTCCGAGGATCGCATTGCGCTGCTCGAGAAGGAGGC
GGCGCATTGGAGGGCTCAATTCGAAGTGGCCAAGCTGCATCAAGCATTTG
TCT
BS14769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-PA | 1221 | CG6607-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-RA | 1514 | CG6607-RA | 131..917 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24528332..24528684 | 93..445 | 1765 | 100 | Plus |
3R | 32079331 | 3R | 24528748..24528928 | 445..625 | 905 | 100 | Plus |
3R | 32079331 | 3R | 24528981..24529159 | 625..803 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24528177..24528254 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:51 has no hits.
BS14769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:15 Download gff for
BS14769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:25 Download gff for
BS14769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 123..917 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:58 Download gff for
BS14769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 123..917 | 9..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:58 Download gff for
BS14769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24528749..24528928 | 446..625 | 100 | -> | Plus |
3R | 24528982..24529159 | 626..803 | 100 | | Plus |
3R | 24528172..24528254 | 11..94 | 94 | -> | Plus |
3R | 24528334..24528684 | 95..445 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:25 Download gff for
BS14769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20354471..20354650 | 446..625 | 100 | -> | Plus |
arm_3R | 20353894..20353976 | 11..94 | 94 | -> | Plus |
arm_3R | 20354056..20354406 | 95..445 | 100 | -> | Plus |
arm_3R | 20354704..20354881 | 626..803 | 100 | | Plus |
BS14769.complete Sequence
1253 bp assembled on 2006-11-01
GenBank Submission: FJ637781
> BS14769.complete
GAAGTTATCAGTCGACATGGCAGAGAAATCGCTAGCCATGGATGGCACGG
TGCCGGAGGCCAAGTACCAGAAATTGGCCACAGAATACTCAAAGCTGCGG
GCACAAGCGACGGTGCTAAAGAAGGCGGTGCTGGAGGAGCAGTCCAAGGA
GGCCAGTCTGCGGGAGCAACTGCAGCAGTACGCCACCTCGTTGCGCCGTA
CGGAGCAGGAGGTGGACTCGCTGGGCTTTCGCAACAAGCAGCTGGAGTCG
CGAGTTTCGCAGCTGCAGCAGGAAATCTCGGTGCACGAGCAGCCCAAAAA
GAAGGACAAGGATTCTGGCGGCAGGCGGGGCGTGCAGAGCAATAGCCGCC
CAGATGCCGATCCATCATTGGATGCCGCTCAGGAAGCCCTCATCTTCGAG
GAACTGCAGAAGAAAATCATGGAGAATGCGCAGCTGACGTCATTGATTGA
CGACAAGCAAAGGGATCTGCTGCTGCACACGGAGCGCATAGCATCGTTGG
AACAGAAGCTGGAGAAACGCATCGGCGATCAGAACGAACTGGAGAAGCGA
CTCAGGAAGGAGGTGGAAACGCTGCAGCACAGGAACAGCGAGCTGGAAAC
AAAGCTGGTTGATGCGGCCAGCATGCTTGGCAGCGAGGACGCACTGAGCG
CCACCGGCAGCGATACTACTCCTCTACACAATCTCCAGCAGCAGTCGAAT
AGCAACCAACTCACCTCCGAGGATCGCATTGCGCTGCTCGAGAAGGAGGC
GGCGCATTGGAGGGCTCAATTCGAAGTGGCCAAGCTGCATCAAGCATTTG
TCTCGAACCCCAGCAAGGATCTCAGCACGTGCAGCTGCAGCACGGCGGCG
GCGGGCGTCACCGTTCGACCGGCAGAGTCGGAGGCGAAAGGCAGCCAGCG
GGCGCGGGATTCGCTGCAGGATCCCCCCGAACCGCCCACCAAGGAGCAGC
TCATCTACAGTGTGTTCAGCAAGAAGTTCGAGGATCTGATGCGACTGAAA
GTGCAAGCGGAATCCAAGTTGCGATCCTACGAGCTGGAGGTTCAGCACCT
GCAAAACTGCCTGGAGAACGCAACGCACGAACTTAAGGCCAAGGACGATC
AGTTGGCCAGTTTGGGTGGAGCCCTGCAAATGCTCGAAGAGGAGTTGACT
ACGACGCGTATTAACTACGAGGAGCAAATCAGCGTGCTGACGGAGCAGGT
CATCAGCTTGAGTGACCAGCTGGCCGCCTGCAAATGAAAGCTTTCTAGAC
CAT
BS14769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-RA | 1221 | CG6607-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-RA | 1514 | CG6607-RA | 131..1351 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24528981..24529503 | 625..1147 | 2615 | 100 | Plus |
3R | 32079331 | 3R | 24528332..24528684 | 93..445 | 1765 | 100 | Plus |
3R | 32079331 | 3R | 24528748..24528928 | 445..625 | 905 | 100 | Plus |
3R | 32079331 | 3R | 24529562..24529652 | 1147..1237 | 455 | 100 | Plus |
3R | 32079331 | 3R | 24528177..24528254 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:52 has no hits.
BS14769.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:17 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 1..1221 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:10 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 94..1324 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:48 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 131..1350 | 17..1236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:17 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 94..1324 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:48 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6607-RA | 131..1350 | 17..1236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:48 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24529563..24529651 | 1148..1236 | 100 | | Plus |
3R | 24528177..24528254 | 17..94 | 100 | -> | Plus |
3R | 24528334..24528684 | 95..445 | 100 | -> | Plus |
3R | 24528749..24528928 | 446..625 | 100 | -> | Plus |
3R | 24528982..24529503 | 626..1147 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:48 Download gff for
BS14769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20353899..20353976 | 17..94 | 100 | -> | Plus |
arm_3R | 20354056..20354406 | 95..445 | 100 | -> | Plus |
arm_3R | 20354471..20354650 | 446..625 | 100 | -> | Plus |
arm_3R | 20354704..20355225 | 626..1147 | 100 | -> | Plus |
arm_3R | 20355285..20355373 | 1148..1236 | 100 | | Plus |
BS14769.pep Sequence
Translation from 16 to 1236
> BS14769.pep
MAEKSLAMDGTVPEAKYQKLATEYSKLRAQATVLKKAVLEEQSKEASLRE
QLQQYATSLRRTEQEVDSLGFRNKQLESRVSQLQQEISVHEQPKKKDKDS
GGRRGVQSNSRPDADPSLDAAQEALIFEELQKKIMENAQLTSLIDDKQRD
LLLHTERIASLEQKLEKRIGDQNELEKRLRKEVETLQHRNSELETKLVDA
ASMLGSEDALSATGSDTTPLHNLQQQSNSNQLTSEDRIALLEKEAAHWRA
QFEVAKLHQAFVSNPSKDLSTCSCSTAAAGVTVRPAESEAKGSQRARDSL
QDPPEPPTKEQLIYSVFSKKFEDLMRLKVQAESKLRSYELEVQHLQNCLE
NATHELKAKDDQLASLGGALQMLEEELTTTRINYEEQISVLTEQVISLSD
QLAACK*
BS14769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6607-PA | 406 | CG6607-PA | 1..406 | 1..406 | 2004 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 853..1248 | 15..404 | 161 | 20.7 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 856..1251 | 15..404 | 161 | 20.7 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 878..1273 | 15..404 | 161 | 20.7 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 907..1302 | 15..404 | 161 | 20.7 | Plus |