Clone BS14769 Report

Search the DGRC for BS14769

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG6607-RA
Protein status:BS14769.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14769.3prime Sequence

757 bp (714 high quality bases) assembled on 2006-10-13

> BS14769.3prime
ATGGTCTAGAAAGCTTTCATTTGCAGGCGGCCAGCTGGTCACTCAAGCTG
ATGACCTGCTCCGTCAGCACGCTGATTTGCTCCTCGTAGTTAATACGCGT
CGTAGTCAACTCCTCTTCGAGCATTTGCAGGGCTCCACCCAAACTGGCCA
ACTGATCGTCCTTGGCCTTAAGTTCGTGCGTTGCGTTCTCCAGGCAGTTT
TGCAGGTGCTGAACCTCCAGCTCGTAGGATCGCAACTTGGATTCCGCTTG
CACTTTCAGTCGCATCAGATCCTCGAACTTCTTGCTGAACACACTGTAGA
TGAGCTGCTCCTTGGTGGGCGGTTCGGGGGGATCCTGCAGCGAATCCCGC
GCCCGCTGGCTGCCTTTCGCCTCCGACTCTGCCGGTCGAACGGTGACGCC
CGCCGCCGCCGTGCTGCAGCTGCACGTGCTGAGATCCTTGCTGGGGTTCG
AGACAAATGCTTGATGCAGCTTGGCCACTTCGAATTGAGCCCTCCAATGC
GCCGCCTCCTTCTCGAGCAGCGCAATGCGATCCTCGGAGGTGAGTTGGTT
GCTATTCGACTGCTGCTGGAGATTGTGTAGAGGAGTAGTATCGCTGCCGG
TGGCGCTCAGTGCGTCCTCGCTGCCAAGCATGCTGGCCGCATCAACCAGC
TTTTGTTTCCAGCTCGCTGTTCCTGTGCTGCAGCGTTTCCACCTCCTTCC
TGAGTCGCTTCTCCAGTTCGTTCTGATCGCCGATGGCGTTTCTCCCGCTT
CTGTTCC

BS14769.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-PA 1221 CG6607-RA 585..1221 653..17 3185 100 Minus
CG6607-PA 1221 CG6607-RA 504..587 735..652 420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-RA 1514 CG6607-RA 613..1351 757..17 3640 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24528981..24529503 629..107 2615 100 Minus
3R 32079331 3R 24528802..24528928 757..629 530 97.7 Minus
3R 32079331 3R 24529562..24529652 107..17 455 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:51:17 has no hits.

BS14769.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:15 Download gff for BS14769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-PA 483..1221 17..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:53 Download gff for BS14769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 613..1353 13..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:53 Download gff for BS14769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 613..1353 13..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:53 Download gff for BS14769.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24528802..24528928 629..757 97 -> Minus
3R 24528982..24529503 107..628 100 -> Minus
3R 24529563..24529654 13..106 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:53 Download gff for BS14769.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20354524..20354650 629..757 97 -> Minus
arm_3R 20354704..20355225 107..628 100 -> Minus
arm_3R 20355285..20355376 13..106 97   Minus

BS14769.5prime Sequence

803 bp (705 high quality bases) assembled on 2006-10-13

> BS14769.5prime
GAAGTTATCAGTCGACATGGCAGAGAAATCGCTAGCCATGGATGGCACGG
TGCCGGAGGCCAAGTACCAGAAATTGGCCACAGAATACTCAAAGCTGCGG
GCACAAGCGACGGTGCTAAAGAAGGCGGTGCTGGAGGAGCAGTCCAAGGA
GGCCAGTCTGCGGGAGCAACTGCAGCAGTACGCCACCTCGTTGCGCCGTA
CGGAGCAGGAGGTGGACTCGCTGGGCTTTCGCAACAAGCAGCTGGAGTCG
CGAGTTTCGCAGCTGCAGCAGGAAATCTCGGTGCACGAGCAGCCCAAAAA
GAAGGACAAGGATTCTGGCGGCAGGCGGGGCGTGCAGAGCAATAGCCGCC
CAGATGCCGATCCATCATTGGATGCCGCTCAGGAAGCCCTCATCTTCGAG
GAACTGCAGAAGAAAATCATGGAGAATGCGCAGCTGACGTCATTGATTGA
CGACAAGCAAAGGGATCTGCTGCTGCACACGGAGCGCATAGCATCGTTGG
AACAGAAGCTGGAGAAACGCATCGGCGATCAGAACGAACTGGAGAAGCGA
CTCAGGAAGGAGGTGGAAACGCTGCAGCACAGGAACAGCGAGCTGGAAAC
AAAGCTGGTTGATGCGGCCAGCATGCTTGGCAGCGAGGACGCACTGAGCG
CCACCGGCAGCGATACTACTCCTCTACACAATCTCCAGCAGCAGTCGAAT
AGCAACCAACTCACCTCCGAGGATCGCATTGCGCTGCTCGAGAAGGAGGC
GGCGCATTGGAGGGCTCAATTCGAAGTGGCCAAGCTGCATCAAGCATTTG
TCT

BS14769.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-PA 1221 CG6607-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-RA 1514 CG6607-RA 131..917 17..803 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24528332..24528684 93..445 1765 100 Plus
3R 32079331 3R 24528748..24528928 445..625 905 100 Plus
3R 32079331 3R 24528981..24529159 625..803 895 100 Plus
3R 32079331 3R 24528177..24528254 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:21:51 has no hits.

BS14769.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:15 Download gff for BS14769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-PA 1..787 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:25 Download gff for BS14769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 123..917 9..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:58 Download gff for BS14769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 123..917 9..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:58 Download gff for BS14769.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24528749..24528928 446..625 100 -> Plus
3R 24528982..24529159 626..803 100   Plus
3R 24528172..24528254 11..94 94 -> Plus
3R 24528334..24528684 95..445 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:25 Download gff for BS14769.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20354471..20354650 446..625 100 -> Plus
arm_3R 20353894..20353976 11..94 94 -> Plus
arm_3R 20354056..20354406 95..445 100 -> Plus
arm_3R 20354704..20354881 626..803 100   Plus

BS14769.complete Sequence

1253 bp assembled on 2006-11-01

GenBank Submission: FJ637781

> BS14769.complete
GAAGTTATCAGTCGACATGGCAGAGAAATCGCTAGCCATGGATGGCACGG
TGCCGGAGGCCAAGTACCAGAAATTGGCCACAGAATACTCAAAGCTGCGG
GCACAAGCGACGGTGCTAAAGAAGGCGGTGCTGGAGGAGCAGTCCAAGGA
GGCCAGTCTGCGGGAGCAACTGCAGCAGTACGCCACCTCGTTGCGCCGTA
CGGAGCAGGAGGTGGACTCGCTGGGCTTTCGCAACAAGCAGCTGGAGTCG
CGAGTTTCGCAGCTGCAGCAGGAAATCTCGGTGCACGAGCAGCCCAAAAA
GAAGGACAAGGATTCTGGCGGCAGGCGGGGCGTGCAGAGCAATAGCCGCC
CAGATGCCGATCCATCATTGGATGCCGCTCAGGAAGCCCTCATCTTCGAG
GAACTGCAGAAGAAAATCATGGAGAATGCGCAGCTGACGTCATTGATTGA
CGACAAGCAAAGGGATCTGCTGCTGCACACGGAGCGCATAGCATCGTTGG
AACAGAAGCTGGAGAAACGCATCGGCGATCAGAACGAACTGGAGAAGCGA
CTCAGGAAGGAGGTGGAAACGCTGCAGCACAGGAACAGCGAGCTGGAAAC
AAAGCTGGTTGATGCGGCCAGCATGCTTGGCAGCGAGGACGCACTGAGCG
CCACCGGCAGCGATACTACTCCTCTACACAATCTCCAGCAGCAGTCGAAT
AGCAACCAACTCACCTCCGAGGATCGCATTGCGCTGCTCGAGAAGGAGGC
GGCGCATTGGAGGGCTCAATTCGAAGTGGCCAAGCTGCATCAAGCATTTG
TCTCGAACCCCAGCAAGGATCTCAGCACGTGCAGCTGCAGCACGGCGGCG
GCGGGCGTCACCGTTCGACCGGCAGAGTCGGAGGCGAAAGGCAGCCAGCG
GGCGCGGGATTCGCTGCAGGATCCCCCCGAACCGCCCACCAAGGAGCAGC
TCATCTACAGTGTGTTCAGCAAGAAGTTCGAGGATCTGATGCGACTGAAA
GTGCAAGCGGAATCCAAGTTGCGATCCTACGAGCTGGAGGTTCAGCACCT
GCAAAACTGCCTGGAGAACGCAACGCACGAACTTAAGGCCAAGGACGATC
AGTTGGCCAGTTTGGGTGGAGCCCTGCAAATGCTCGAAGAGGAGTTGACT
ACGACGCGTATTAACTACGAGGAGCAAATCAGCGTGCTGACGGAGCAGGT
CATCAGCTTGAGTGACCAGCTGGCCGCCTGCAAATGAAAGCTTTCTAGAC
CAT

BS14769.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-RA 1221 CG6607-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-RA 1514 CG6607-RA 131..1351 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24528981..24529503 625..1147 2615 100 Plus
3R 32079331 3R 24528332..24528684 93..445 1765 100 Plus
3R 32079331 3R 24528748..24528928 445..625 905 100 Plus
3R 32079331 3R 24529562..24529652 1147..1237 455 100 Plus
3R 32079331 3R 24528177..24528254 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:44:52 has no hits.

BS14769.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:17 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 1..1221 17..1237 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:10 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 94..1324 9..1241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:48 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 131..1350 17..1236 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:17 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 94..1324 9..1241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:48 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
CG6607-RA 131..1350 17..1236 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:48 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24529563..24529651 1148..1236 100   Plus
3R 24528177..24528254 17..94 100 -> Plus
3R 24528334..24528684 95..445 100 -> Plus
3R 24528749..24528928 446..625 100 -> Plus
3R 24528982..24529503 626..1147 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:48 Download gff for BS14769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20353899..20353976 17..94 100 -> Plus
arm_3R 20354056..20354406 95..445 100 -> Plus
arm_3R 20354471..20354650 446..625 100 -> Plus
arm_3R 20354704..20355225 626..1147 100 -> Plus
arm_3R 20355285..20355373 1148..1236 100   Plus

BS14769.pep Sequence

Translation from 16 to 1236

> BS14769.pep
MAEKSLAMDGTVPEAKYQKLATEYSKLRAQATVLKKAVLEEQSKEASLRE
QLQQYATSLRRTEQEVDSLGFRNKQLESRVSQLQQEISVHEQPKKKDKDS
GGRRGVQSNSRPDADPSLDAAQEALIFEELQKKIMENAQLTSLIDDKQRD
LLLHTERIASLEQKLEKRIGDQNELEKRLRKEVETLQHRNSELETKLVDA
ASMLGSEDALSATGSDTTPLHNLQQQSNSNQLTSEDRIALLEKEAAHWRA
QFEVAKLHQAFVSNPSKDLSTCSCSTAAAGVTVRPAESEAKGSQRARDSL
QDPPEPPTKEQLIYSVFSKKFEDLMRLKVQAESKLRSYELEVQHLQNCLE
NATHELKAKDDQLASLGGALQMLEEELTTTRINYEEQISVLTEQVISLSD
QLAACK*

BS14769.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6607-PA 406 CG6607-PA 1..406 1..406 2004 100 Plus
CLIP-190-PN 1598 CG5020-PN 853..1248 15..404 161 20.7 Plus
CLIP-190-PR 1601 CG5020-PR 856..1251 15..404 161 20.7 Plus
CLIP-190-PP 1623 CG5020-PP 878..1273 15..404 161 20.7 Plus
CLIP-190-PC 1652 CG5020-PC 907..1302 15..404 161 20.7 Plus