Clone Sequence Records
BS14776.3prime Sequence
423 bp (423 high quality bases) assembled on 2006-10-13
> BS14776.3prime
ATGGTCTAGAAAGCTTTTACATGCTGAACGATTCGCCGCAGCCGCATGTG
CCCTTAATGTTCGGATTGTTAAACACGAACTCGCTGGACAGCTTCGATTC
CACAAAGTCCATCTCGGTACCCAGCAGCGACAACTGCGCTTTCTTGTCGA
TGAAGACCTTGACGCCATCCTGGACCACCTCCTCATCCAACTTGTCTTTT
TGGCTGGCATAGTCCAGCGTGTAGGACAGACCATTGCATCCTCGCTGCCG
TACGCCCACCTTTAGGCCAACCATGTCCGGCTTGTCCTGCAGAAGCGTCT
TGATGCGTAGCACCGCCGCGGGTGTCAGAGTCAGAGCGGCCCGCGTCGGG
ATTAACTTCCGGCCTTTCACCGCCCGCACTGTCGCCGTTGCCACCACACG
TGTCGCCATGTCGACTGATAACT
BS14776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8198-PA | 393 | l(1)G0136-RA | 1..393 | 409..17 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..493 | 409..16 | 1970 | 100 | Minus |
l(1)G0136-RB | 783 | CG8198-RB | 100..496 | 409..16 | 1930 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735493 | 121..16 | 530 | 100 | Minus |
X | 23542271 | X | 15734369..15734452 | 409..326 | 420 | 100 | Minus |
X | 23542271 | X | 15735245..15735324 | 197..118 | 400 | 100 | Minus |
X | 23542271 | X | 15735098..15735174 | 272..196 | 385 | 100 | Minus |
X | 23542271 | X | 15734552..15734608 | 326..270 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:20:34 has no hits.
BS14776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:19 Download gff for
BS14776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:48 Download gff for
BS14776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..493 | 16..413 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:52 Download gff for
BS14776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..493 | 16..413 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:52 Download gff for
BS14776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15735247..15735321 | 121..195 | 100 | -> | Minus |
X | 15735389..15735493 | 16..120 | 100 | | Minus |
X | 15734367..15734452 | 326..413 | 97 | -> | Minus |
X | 15734553..15734606 | 272..325 | 100 | -> | Minus |
X | 15735099..15735174 | 196..271 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:48 Download gff for
BS14776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15628400..15628485 | 326..413 | 97 | -> | Minus |
arm_X | 15628586..15628639 | 272..325 | 100 | -> | Minus |
arm_X | 15629132..15629207 | 196..271 | 100 | -> | Minus |
arm_X | 15629280..15629354 | 121..195 | 100 | -> | Minus |
arm_X | 15629422..15629526 | 16..120 | 100 | | Minus |
BS14776.5prime Sequence
423 bp (423 high quality bases) assembled on 2006-10-13
> BS14776.5prime
GAAGTTATCAGTCGACATGGCGACACGTGTGGTGGCAACGGCGACAGTGC
GGGCGGTGAAAGGCCGGAAGTTAATCCCGACGCGGGCCGCTCTGACTCTG
ACACCCGCGGCGGTGCTACGCATCAAGACGCTTCTGCAGGACAAGCCGGA
CATGGTTGGCCTAAAGGTGGGCGTACGGCAGCGAGGATGCAATGGTCTGT
CCTACACGCTGGACTATGCCAGCCAAAAAGACAAGTTGGATGAGGAGGTG
GTCCAGGATGGCGTCAAGGTCTTCATCGACAAGAAAGCGCAGTTGTCGCT
GCTGGGTACCGAGATGGACTTTGTGGAATCGAAGCTGTCCAGCGAGTTCG
TGTTTAACAATCCGAACATTAAGGGCACATGCGGCTGCGGCGAATCGTTC
AGCATGTAAAAGCTTTCTAGACC
BS14776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8198-PA | 393 | l(1)G0136-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..493 | 17..410 | 1970 | 100 | Plus |
l(1)G0136-RB | 783 | CG8198-RB | 100..496 | 17..410 | 1930 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735493 | 305..410 | 530 | 100 | Plus |
X | 23542271 | X | 15734369..15734452 | 17..100 | 420 | 100 | Plus |
X | 23542271 | X | 15735245..15735324 | 229..308 | 400 | 100 | Plus |
X | 23542271 | X | 15735098..15735174 | 154..230 | 385 | 100 | Plus |
X | 23542271 | X | 15734552..15734608 | 100..156 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:12:57 has no hits.
BS14776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:20 Download gff for
BS14776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:50 Download gff for
BS14776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..493 | 13..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:28 Download gff for
BS14776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..493 | 13..410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:28 Download gff for
BS14776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15734367..15734452 | 13..100 | 97 | -> | Plus |
X | 15734553..15734606 | 101..154 | 100 | -> | Plus |
X | 15735099..15735174 | 155..230 | 100 | -> | Plus |
X | 15735247..15735321 | 231..305 | 100 | -> | Plus |
X | 15735389..15735493 | 306..410 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:50 Download gff for
BS14776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15629280..15629354 | 231..305 | 100 | -> | Plus |
arm_X | 15629422..15629526 | 306..410 | 100 | | Plus |
arm_X | 15629132..15629207 | 155..230 | 100 | -> | Plus |
arm_X | 15628400..15628485 | 13..100 | 97 | -> | Plus |
arm_X | 15628586..15628639 | 101..154 | 100 | -> | Plus |
BS14776.complete Sequence
425 bp assembled on 2006-11-01
GenBank Submission: FJ637783
> BS14776.complete
GAAGTTATCAGTCGACATGGCGACACGTGTGGTGGCAACGGCGACAGTGC
GGGCGGTGAAAGGCCGGAAGTTAATCCCGACGCGGGCCGCTCTGACTCTG
ACACCCGCGGCGGTGCTACGCATCAAGACGCTTCTGCAGGACAAGCCGGA
CATGGTTGGCCTAAAGGTGGGCGTACGGCAGCGAGGATGCAATGGTCTGT
CCTACACGCTGGACTATGCCAGCCAAAAAGACAAGTTGGATGAGGAGGTG
GTCCAGGATGGCGTCAAGGTCTTCATCGACAAGAAAGCGCAGTTGTCGCT
GCTGGGTACCGAGATGGACTTTGTGGAATCGAAGCTGTCCAGCGAGTTCG
TGTTTAACAATCCGAACATTAAGGGCACATGCGGCTGCGGCGAATCGTTC
AGCATGTAAAAGCTTTCTAGACCAT
BS14776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 393 | CG8198-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
l(1)G0136-RB | 396 | CG8198-PB | 1..396 | 17..409 | 1900 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..493 | 17..410 | 1970 | 100 | Plus |
l(1)G0136-RB | 783 | CG8198-RB | 100..496 | 17..410 | 1905 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735493 | 305..410 | 530 | 100 | Plus |
X | 23542271 | X | 15734369..15734452 | 17..100 | 420 | 100 | Plus |
X | 23542271 | X | 15735245..15735324 | 229..308 | 400 | 100 | Plus |
X | 23542271 | X | 15735098..15735174 | 154..230 | 385 | 100 | Plus |
X | 23542271 | X | 15734552..15734608 | 100..156 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:04 has no hits.
BS14776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:18 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:11 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 88..483 | 13..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:35 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 100..490 | 17..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:19 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 88..483 | 13..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:17 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 100..490 | 17..407 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:17 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15734369..15734452 | 17..100 | 100 | -> | Plus |
X | 15734553..15734606 | 101..154 | 100 | -> | Plus |
X | 15735099..15735174 | 155..230 | 100 | -> | Plus |
X | 15735247..15735321 | 231..305 | 100 | -> | Plus |
X | 15735389..15735490 | 306..407 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:35 Download gff for
BS14776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15628402..15628485 | 17..100 | 100 | -> | Plus |
arm_X | 15628586..15628639 | 101..154 | 100 | -> | Plus |
arm_X | 15629132..15629207 | 155..230 | 100 | -> | Plus |
arm_X | 15629280..15629354 | 231..305 | 100 | -> | Plus |
arm_X | 15629422..15629523 | 306..407 | 100 | | Plus |
BS14776.pep Sequence
Translation from 16 to 408
> BS14776.pep
MATRVVATATVRAVKGRKLIPTRAALTLTPAAVLRIKTLLQDKPDMVGLK
VGVRQRGCNGLSYTLDYASQKDKLDEEVVQDGVKVFIDKKAQLSLLGTEM
DFVESKLSSEFVFNNPNIKGTCGCGESFSM*
BS14776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-PA | 130 | CG8198-PA | 1..130 | 1..130 | 651 | 100 | Plus |
l(1)G0136-PB | 131 | CG8198-PB | 1..131 | 1..130 | 639 | 99.2 | Plus |