Clone Sequence Records
BS14779.5prime Sequence
627 bp (563 high quality bases) assembled on 2006-10-13
> BS14779.5prime
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAAAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTTCGAACCGAGCAACT
BS14779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-PA | 816 | CG9863-RA | 1..610 | 17..627 | 2965 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 1134 | CG9863-RB | 22..631 | 17..627 | 3000 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23346656..23347265 | 17..627 | 2975 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:25:44 has no hits.
BS14779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:22 Download gff for
BS14779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-PA | 1..610 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:46 Download gff for
BS14779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..631 | 3..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:36 Download gff for
BS14779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..631 | 3..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:36 Download gff for
BS14779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23346642..23347265 | 3..627 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:46 Download gff for
BS14779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19234165..19234788 | 3..627 | 98 | | Plus |
BS14779.complete Sequence
848 bp assembled on 2012-04-25
GenBank Submission: KX804366
> BS14779.complete
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTCAGTCCGAAAACACTGAACCTTCGCGTTA
TTGACTTTCTGAAACCGGTTCGACAGAAGTAGAAGCTTTCTAGACCAT
BS14779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 804 | CG9863-PB | 1..804 | 29..832 | 4005 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 1134 | CG9863-RB | 22..837 | 17..832 | 4065 | 99.9 | Plus |
CG3502-RB | 3171 | CG3502-RB | 171..345 | 832..658 | 875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23346656..23347471 | 17..832 | 4065 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:11:02 has no hits.
BS14779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:11 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..837 | 3..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:30 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..837 | 24..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:21 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..837 | 24..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:58 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..837 | 24..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:55 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..837 | 24..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:55 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23346663..23347471 | 24..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:21 Download gff for
BS14779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19234186..19234994 | 24..832 | 99 | | Plus |
BS14779.pep Sequence
Translation from 16 to 831
> BS14779.pep
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQK*
BS14779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-PB | 267 | CG9863-PB | 1..267 | 5..271 | 1407 | 100 | Plus |
CG3092-PA | 347 | CG3092-PA | 91..244 | 64..215 | 206 | 35.7 | Plus |
CG30412-PC | 295 | CG30412-PC | 77..272 | 58..254 | 169 | 29.2 | Plus |
CG30412-PB | 301 | CG30412-PB | 83..278 | 58..254 | 169 | 29.2 | Plus |