Clone BS14779 Report

Search the DGRC for BS14779

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG9863-RB
Protein status:BS14779.pep: gold
Sequenced Size:848

Clone Sequence Records

BS14779.5prime Sequence

627 bp (563 high quality bases) assembled on 2006-10-13

> BS14779.5prime
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAAAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTTCGAACCGAGCAACT

BS14779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PA 816 CG9863-RA 1..610 17..627 2965 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 1134 CG9863-RB 22..631 17..627 3000 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346656..23347265 17..627 2975 99.5 Plus
Blast to na_te.dros performed on 2015-02-05 02:25:44 has no hits.

BS14779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:22 Download gff for BS14779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-PA 1..610 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:46 Download gff for BS14779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..631 3..627 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:36 Download gff for BS14779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..631 3..627 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:36 Download gff for BS14779.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23346642..23347265 3..627 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:46 Download gff for BS14779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234165..19234788 3..627 98   Plus

BS14779.complete Sequence

848 bp assembled on 2012-04-25

GenBank Submission: KX804366

> BS14779.complete
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTCAGTCCGAAAACACTGAACCTTCGCGTTA
TTGACTTTCTGAAACCGGTTCGACAGAAGTAGAAGCTTTCTAGACCAT

BS14779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 804 CG9863-PB 1..804 29..832 4005 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 1134 CG9863-RB 22..837 17..832 4065 99.9 Plus
CG3502-RB 3171 CG3502-RB 171..345 832..658 875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346656..23347471 17..832 4065 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 12:11:02 has no hits.

BS14779.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:11 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..837 3..832 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:30 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..837 24..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:21 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..837 24..832 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:58 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..837 24..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:55 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..837 24..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:55 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23346663..23347471 24..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:21 Download gff for BS14779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234186..19234994 24..832 99   Plus

BS14779.pep Sequence

Translation from 16 to 831

> BS14779.pep
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQK*

BS14779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PB 267 CG9863-PB 1..267 5..271 1407 100 Plus
CG3092-PA 347 CG3092-PA 91..244 64..215 206 35.7 Plus
CG30412-PC 295 CG30412-PC 77..272 58..254 169 29.2 Plus
CG30412-PB 301 CG30412-PB 83..278 58..254 169 29.2 Plus