Clone Sequence Records
BS14785.5prime Sequence
721 bp (675 high quality bases) assembled on 2006-10-13
> BS14785.5prime
GAAGTTATCAGTCGACATGATAATAATGTCTGATTCGAAAGCGGAGTACA
ACTGGGGCGATTTGGGTGTGGAGTCGATGGAGAGCTTTGCATCCGCAATA
AGTGAGGAGTTTCCCAGACTCCAACAGCATCGTGAGCAGGTGGAGCAGCT
GCAGCGACGCGGCAGGCAGATTGTCAGCCAGGCCCAGCAGCATTCTCAGG
TTTTGGTCTCCAATCTGTTCAAGAATATGAAGATCTCGTGCGAGAAGCCC
ACATTTCCACCGCAGGTGTCGGCTCCAAAGGCCTATCGCTTCAAGGACAT
CTATTCCAGTCGCAAGGATCAGCTGATCCGCGAATGCAGGGAGCAGGAGC
GCAAGCAGCGCGAGTTCCACAGCCGACCGATGCCCGACTTTCGTCAGGCG
CACTCACGTCAGTCCTCCAGGGTCGTTGTGCATCGGATCACCTGCCCCAC
GACCCCCAATGTGCTCAAGAATTCGCGTGAAATGGAGGAAAAGCGCCGCT
TGCGGGTGGAGCAGCTGCAGAGGGAGCGCGAGCTGGAGTCCCAACTTCAC
AAAATGCAGGCTCCTAGGGCCAAACCGATTCCGCAGAGCAGCCGTCAGCC
CTTGAAGTCCTCGAACCGACCTTCCTCCGCAGTTCCAGCGGCAAGGGTGA
AGGTCGAGCCCTTCAACTTGTCCGCCGAATCGCGCGTCCAGCATCGGCGC
ATTTTCAACATCCAGACGTCC
BS14785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-PA | 837 | CG15395-RA | 1..705 | 17..721 | 3500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 1234 | CG15395-RB | 165..869 | 17..721 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2610476..2610918 | 279..721 | 2200 | 99.8 | Plus |
2L | 23513712 | 2L | 2610158..2610422 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:53:30 has no hits.
BS14785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:26 Download gff for
BS14785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-PA | 1..705 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:54:39 Download gff for
BS14785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 154..869 | 7..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:28:53 Download gff for
BS14785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 154..869 | 7..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:28:53 Download gff for
BS14785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2610147..2610421 | 7..280 | 98 | -> | Plus |
2L | 2610478..2610918 | 281..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:54:39 Download gff for
BS14785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2610147..2610421 | 7..280 | 98 | -> | Plus |
arm_2L | 2610478..2610918 | 281..721 | 99 | | Plus |
BS14785.complete Sequence
869 bp assembled on 2012-04-25
GenBank Submission: KX804367
> BS14785.complete
GAAGTTATCAGTCGACATGATAATAATGTCTGATTCGAAAGCGGAGTACA
ACTGGGGCGATTTGGGTGTGGAGTCGATGGAGAGCTTTGCATCCGCAATA
AGTGAGGAGTTTCCCAGACTCCAACAGCATCGTGAGCAGGTGGAGCAGCT
GCAGCGACGCGGCAGGCAGATTGTCAGCCAGGCCCAGCAGCATTCTCAGG
TTTTGGTCTCCAATCTGTTCAAGAATATGAAGATCTCGTGCGAGAAGCCC
ACATTTCCACCGCAGGTGTCGGCTCCAAAGGCCTATCGCTTCAAGGACAT
CTATTCCAGTCGCAAGGATCAGCTGATCCGCGAATGCAGGGAGCAGGAGC
GCAAGCAGCGCGAGTTCCACAGCCGACCGATGCCCGACTTTCGTCAGGCG
CACTCACGTCAGTCCTCCAGGGTCGTTGTGCATCGGATCACCTGCCCCAC
GACCCCCAATGTGCTCAAGAATTCGCGTGAAATGGAGGAAAAGCGCCGCT
TGCGGGTGGAGCAGCTGCAGAGGGAGCGCGAGCTGGAGTCCCAACTTCAC
AAAATGCAGGCTCCTAGGGCCAAACCGATTCCGCAGAGCAGCCGTCAGCC
CTTGAAGTCCTCGAACCGACCTTCCTCCGCAGTTCCAGCGGCAAGGGTGA
AGGTCGAGCCCTTCAACTTGTCCGCCGAATCGCGCGTCCAGCAGCGGCGC
ATTTTCAACATCCAGACGTCCAAGGCGCAGGAGGCGCGGCGCCGCGAGCT
GGAGGATCAGCGCCAACGGGCGGAACGGGAGGCCTACCAAAAGCTGCGCC
AACGAACCACGTTCCGCGCCAGACCCAATCCATTTTCGCAGACCGCACGT
TGAAAGCTTTCTAGACCAT
BS14785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 828 | CG15395-PB | 1..828 | 26..853 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 1234 | CG15395-RB | 165..1001 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2610476..2611050 | 279..853 | 2875 | 100 | Plus |
2L | 23513712 | 2L | 2610158..2610422 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:13:53 has no hits.
BS14785.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:13 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 1..852 | 7..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:39 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 13..848 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:16 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 165..1000 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:01 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 13..848 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:05 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 165..1000 | 17..852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:05 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2610158..2610421 | 17..280 | 100 | -> | Plus |
2L | 2610478..2611049 | 281..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:16 Download gff for
BS14785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2610158..2610421 | 17..280 | 100 | -> | Plus |
arm_2L | 2610478..2611049 | 281..852 | 100 | | Plus |
BS14785.pep Sequence
Translation from 16 to 852
> BS14785.pep
MIIMSDSKAEYNWGDLGVESMESFASAISEEFPRLQQHREQVEQLQRRGR
QIVSQAQQHSQVLVSNLFKNMKISCEKPTFPPQVSAPKAYRFKDIYSSRK
DQLIRECREQERKQREFHSRPMPDFRQAHSRQSSRVVVHRITCPTTPNVL
KNSREMEEKRRLRVEQLQRERELESQLHKMQAPRAKPIPQSSRQPLKSSN
RPSSAVPAARVKVEPFNLSAESRVQQRRIFNIQTSKAQEARRRELEDQRQ
RAEREAYQKLRQRTTFRARPNPFSQTAR*
BS14785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-PB | 275 | CG15395-PB | 1..275 | 4..278 | 1397 | 100 | Plus |
mei-38-PA | 325 | CG14781-PA | 193..319 | 85..246 | 240 | 33.3 | Plus |
mei-38-PB | 326 | CG14781-PB | 194..320 | 85..246 | 240 | 33.3 | Plus |
CG5781-PA | 266 | CG5781-PA | 74..255 | 87..276 | 175 | 26.9 | Plus |