Clone Sequence Records
BS14786.3prime Sequence
585 bp (585 high quality bases) assembled on 2006-10-13
> BS14786.3prime
ATGGTCTAGAAAGCTTTTAAACAAATGTGAACTGTCGTGCTTTACTACGT
GAATTTGAGTTCGCGGTGGTGCTGGTGGCGGTGCTGTTTGAGTTGGGTGC
AGTGCGGCGCAGAGTCTTTTGCAGTACATGAGCGTCCGCCGGCTCGATGC
GCTTATAGTATTGCTCCTTGGTGTCAACAATCTCGAAACCAAACTTCTTA
TAGAACTCGATGGCTCCGTTGTTGTTGATTTGCACATGTAGAAAAATGCT
GTCGAAGTTTCCGTCCTTCTCGGCGAAGTTCATAATGTGCTCGAACATAA
CTGTGCCGATGCCCAGGCGCCGGTACGGGGAGAGGCATCCTAGGGTCATG
ATATACAGGCGCCGCTGGTTCTCAGTGTTGTCGATGCGACAGCAGACGGC
GCCCACTACAATGTCGTTGTAGTAGGCCAATTTGGCCAGTTCGCCGGCCT
CCAGGACGTCCACGTAAAACTTGTCATTGTAGGAGACCGGGAAAACCACG
GTGTTGAGCTTCTTTAGCTGCTTGATGTTGTGGGGCGTCACGTCGCCCAG
TTCGATGCTGCTCCTAGTCATGTCGACTGATAACT
BS14786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12352-PA | 555 | san-RA | 1..555 | 571..17 | 2750 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-RA | 808 | CG12352-RA | 118..675 | 573..16 | 2775 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11360957..11361282 | 565..240 | 1615 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11361515..11361738 | 239..16 | 1120 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:20:51 has no hits.
BS14786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:26 Download gff for
BS14786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12352-PA | 1..555 | 17..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:52 Download gff for
BS14786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 108..675 | 16..585 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:34 Download gff for
BS14786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 108..675 | 16..585 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:34 Download gff for
BS14786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11360950..11361282 | 240..575 | 98 | -> | Minus |
| 2R | 11361515..11361738 | 16..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:52 Download gff for
BS14786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7248455..7248787 | 240..575 | 98 | -> | Minus |
| arm_2R | 7249020..7249243 | 16..239 | 100 | | Minus |
BS14786.5prime Sequence
585 bp (585 high quality bases) assembled on 2006-10-13
> BS14786.5prime
GAAGTTATCAGTCGACATGACTAGGAGCAGCATCGAACTGGGCGACGTGA
CGCCCCACAACATCAAGCAGCTAAAGAAGCTCAACACCGTGGTTTTCCCG
GTCTCCTACAATGACAAGTTTTACGTGGACGTCCTGGAGGCCGGCGAACT
GGCCAAATTGGCCTACTACAACGACATTGTAGTGGGCGCCGTCTGCTGTC
GCATCGACAACACTGAGAACCAGCGGCGCCTGTATATCATGACCCTAGGA
TGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCACAGTTATGTTCGAGCA
CATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTTTCTAC
ATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGT
TTCGAGATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGC
GGACGCTCATGTACTGCAAAAGACTCTGCGCCGCACTGCACCCAACTCAA
ACAGCACCGCCACCAGCACCACCGCGAACTCAAATTCACGTAGTAAAGCA
CGACAGTTCACATTTGTTTAAAAGCTTTCTAGACC
BS14786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12352-PA | 555 | san-RA | 1..555 | 17..571 | 2750 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-RA | 808 | CG12352-RA | 118..675 | 15..572 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11360957..11361282 | 23..348 | 1615 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11361515..11361738 | 349..572 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:18 has no hits.
BS14786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:27 Download gff for
BS14786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12352-PA | 1..555 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:57 Download gff for
BS14786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 110..675 | 6..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:18 Download gff for
BS14786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 110..675 | 6..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:18 Download gff for
BS14786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11360950..11361282 | 13..348 | 98 | -> | Plus |
| 2R | 11361515..11361738 | 349..572 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:57 Download gff for
BS14786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7248455..7248787 | 13..348 | 98 | -> | Plus |
| arm_2R | 7249020..7249243 | 349..572 | 100 | | Plus |
BS14786.complete Sequence
587 bp assembled on 2006-11-01
GenBank Submission: FJ637784
> BS14786.complete
GAAGTTATCAGTCGACATGACTAGGAGCAGCATCGAACTGGGCGACGTGA
CGCCCCACAACATCAAGCAGCTAAAGAAGCTCAACACCGTGGTTTTCCCG
GTCTCCTACAATGACAAGTTTTACGTGGACGTCCTGGAGGCCGGCGAACT
GGCCAAATTGGCCTACTACAACGACATTGTAGTGGGCGCCGTCTGCTGTC
GCATCGACAACACTGAGAACCAGCGGCGCCTGTATATCATGACCCTAGGA
TGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCACAGTTATGTTCGAGCA
CATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTTTCTAC
ATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGT
TTCGAGATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGC
GGACGCTCATGTACTGCAAAAGACTCTGCGCCGCACTGCACCCAACTCAA
ACAGCACCGCCACCAGCACCACCGCGAACTCAAATTCACGTAGTAAAGCA
CGACAGTTCACATTTGTTTAAAAGCTTTCTAGACCAT
BS14786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-RA | 555 | CG12352-PA | 1..555 | 17..571 | 2760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-RA | 808 | CG12352-RA | 118..675 | 15..572 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11360957..11361282 | 23..348 | 1615 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11361515..11361738 | 349..572 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:53:01 has no hits.
BS14786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:19 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 1..555 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:13 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 118..683 | 6..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:37 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 120..672 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:20 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 118..683 | 6..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:16 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 120..672 | 17..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:16 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11360953..11361282 | 17..348 | 98 | -> | Plus |
| 2R | 11361515..11361735 | 349..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:37 Download gff for
BS14786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7248458..7248787 | 17..348 | 98 | -> | Plus |
| arm_2R | 7249020..7249240 | 349..569 | 100 | | Plus |
BS14786.pep Sequence
Translation from 16 to 570
> BS14786.pep
MTRSSIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYVDVLEAGELAKLAY
YNDIVVGAVCCRIDNTENQRRLYIMTLGCLSPYRRLGIGTVMFEHIMNFA
EKDGNFDSIFLHVQINNNGAIEFYKKFGFEIVDTKEQYYKRIEPADAHVL
QKTLRRTAPNSNSTATSTTANSNSRSKARQFTFV*
BS14786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-PA | 184 | CG12352-PA | 1..184 | 1..184 | 954 | 100 | Plus |
