Clone Sequence Records
BS14790.3prime Sequence
779 bp (760 high quality bases) assembled on 2006-10-13
> BS14790.3prime
ATGGTCTAGAAAGCTTTTATTCGGTGCAATATTGACAATGGGCTTCGGGC
GTGGCCTCCTCTTCACCGCTTTCGGCGCTTCCACTTCGGCCACCGCCTCC
TCCACCGCCACCACCGGAATCCTCGCCCTCAGCACTACTGCGGTAATCAT
CGATGATGGCTTGTAACTCCTGCTGCGCATCCTGGAACTCCTGTTCCTCC
ATTCCCTCTCCCGTGTACCAGTGAAGATGGGCCTTGCGCCGCAACATGGA
CATGGAAGCGTCCAGTAATCGCTGGAACAGCGTCTGAATCGCCGTTGTGT
TGCCAATGAATGTAGCTGACATCTTGAGGCCCCTCGGCGGTATATCGCAA
ATAGCCGTCTTGATATTGTTGGGTATCCAGTCCACGAAATTGTTGATATT
CTTATTTCTCACCCCAGTCATCAGTTGATCCACCTCACGCGGTGACATTC
TTCCTCGGAAAATTCCAGCAGCGGTCAGCAGTTTGCCCTTTCGAAGATCG
ATGGCACAGAGCAGATTATTACTGTAGAAGATCTGCTGCACCAGCTCCGA
AACGGTACCCTTGCTGAACTGCTGCTGCTTGCAAGTGACCAATGGTGCGA
ATCCCGGTATGAGGAAGTGCAGCCGCGGGAATGGCACCATATTTACATAG
ATCTTGCGCAATCCAGCATTCAGTTGGCCAGGAAACCGCAGGCAAGTGGT
TATACCCGACATGGTCAGGGCTACTATGTGGTTAATGTGCTCGTAGCCGG
ACATCTTGAGCTTCAGGTTTCTATTGCAG
BS14790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-PA | 1389 | CG32396-RA | 627..1389 | 779..17 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-RA | 1649 | CG32396-RA | 761..1523 | 779..17 | 3815 | 100 | Minus |
| betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 715..594 | 220 | 79.7 | Minus |
| betaTub60D-RB | 2515 | CG3401-RB | 907..1028 | 718..597 | 205 | 78.9 | Minus |
| betaTub85D-RA | 1841 | CG9359-RA | 1251..1355 | 388..284 | 195 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6531541..6532303 | 779..17 | 3815 | 100 | Minus |
| 3R | 32079331 | 3R | 9409179..9409300 | 594..715 | 220 | 78.7 | Plus |
| 2R | 25286936 | 2R | 24311491..24311612 | 718..597 | 205 | 77.9 | Minus |
| 3R | 32079331 | 3R | 9408869..9408973 | 284..388 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:24 has no hits.
BS14790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:29 Download gff for
BS14790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-PA | 627..1389 | 17..779 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:59 Download gff for
BS14790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 761..1530 | 8..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:32 Download gff for
BS14790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 761..1530 | 8..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:32 Download gff for
BS14790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6531541..6532310 | 8..779 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:59 Download gff for
BS14790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6524641..6525410 | 8..779 | 99 | | Minus |
BS14790.complete Sequence
1421 bp assembled on 2006-11-01
GenBank Submission: FJ637785
> BS14790.complete
GAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGCAGATCGGCGGAG
CCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATTTCACATGAACAC
GGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAGTCCACTTCAGCT
GGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCAAACGGTTCTATG
CCCGCACCATACTGATAGACACGGAAGCCAGCACCATTCAGCGTCTCAAC
GCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGCTGGATCGGAGAG
TGCTGGGAACAACTTTGCACGTGGCTATCATACGGATGGTGCCGCCATTC
TAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAATCGGTGGATTCG
TTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGGAACTGGCTCCGG
CTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGTATCCGGATAATT
TACTCTGCAACTATGTGACCATTCCGTCGCCGAATATGTCGCAGGTGGTT
GTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTGGTTAACAATTC
GCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCCAAATCTGCAATA
GAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATTAACCACATAGTA
GCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTTTCCTGGCCAACT
GAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGCCATTCCCGCGGC
TGCACTTCCTCATACCGGGATTCGCACCATTGGTCACTTGCAAGCAGCAG
CAGTTCAGCAAGGGTACCGTTTCGGAGCTGGTGCAGCAGATCTTCTACAG
TAATAATCTGCTCTGTGCCATCGATCTTCGAAAGGGCAAACTGCTGACCG
CTGCTGGAATTTTCCGAGGAAGAATGTCACCGCGTGAGGTGGATCAACTG
ATGACTGGGGTGAGAAATAAGAATATCAACAATTTCGTGGACTGGATACC
CAACAATATCAAGACGGCTATTTGCGATATACCGCCGAGGGGCCTCAAGA
TGTCAGCTACATTCATTGGCAACACAACGGCGATTCAGACGCTGTTCCAG
CGATTACTGGACGCTTCCATGTCCATGTTGCGGCGCAAGGCCCATCTTCA
CTGGTACACGGGAGAGGGAATGGAGGAACAGGAGTTCCAGGATGCGCAGC
AGGAGTTACAAGCCATCATCGATGATTACCGCAGTAGTGCTGAGGGCGAG
GATTCCGGTGGTGGCGGTGGAGGAGGCGGTGGCCGAAGTGGAAGCGCCGA
AAGCGGTGAAGAGGAGGCCACGCCCGAAGCCCATTGTCAATATTGCACCG
AATAAAAGCTTTCTAGACCAT
BS14790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-RA | 1389 | CG32396-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| betaTub85D-RA | 1341 | CG9359-PA | 694..815 | 707..828 | 220 | 78.7 | Plus |
| betaTub60D-RB | 1362 | CG3401-PB | 706..827 | 704..825 | 205 | 77.9 | Plus |
| betaTub85D-RA | 1341 | CG9359-PA | 1021..1125 | 1034..1138 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-RA | 1649 | CG32396-RA | 129..1523 | 11..1405 | 6960 | 99.9 | Plus |
| betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 707..828 | 220 | 78.7 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 907..1028 | 704..825 | 205 | 77.9 | Plus |
| betaTub85D-RA | 1841 | CG9359-RA | 1251..1355 | 1034..1138 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6530972..6532303 | 74..1405 | 6660 | 100 | Plus |
| 3L | 28110227 | 3L | 6530857..6530919 | 11..73 | 300 | 98.4 | Plus |
| 3R | 32079331 | 3R | 9409179..9409300 | 828..707 | 220 | 78.7 | Minus |
| 2R | 25286936 | 2R | 24311491..24311612 | 704..825 | 205 | 77.9 | Plus |
| 2R | 25286936 | 2R | 19447992..19448115 | 825..702 | 200 | 77.4 | Minus |
| 3R | 32079331 | 3R | 9408869..9408973 | 1138..1034 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:06 has no hits.
BS14790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:21 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 1..1389 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:15 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 122..1530 | 3..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:26 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 135..1521 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:21 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 122..1530 | 3..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:18 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32396-RA | 135..1521 | 17..1403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:18 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6530863..6530919 | 17..73 | 100 | -> | Plus |
| 3L | 6530972..6532301 | 74..1403 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:26 Download gff for
BS14790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6523963..6524019 | 17..73 | 100 | -> | Plus |
| arm_3L | 6524072..6525401 | 74..1403 | 100 | | Plus |
BS14790.pep Sequence
Translation from 16 to 1404
> BS14790.pep
MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINV
FFNATASKRFYARTILIDTEASTIQRLNASSQLYRPENFVAGSESAGNNF
ARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLI
MEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFC
LDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLR
KIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLC
AIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKT
AICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGE
GMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESGEEE
ATPEAHCQYCTE*
BS14790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32396-PA | 462 | CG32396-PA | 1..462 | 1..462 | 2405 | 100 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 1..427 | 1..426 | 1280 | 55.4 | Plus |
| betaTub85D-PA | 446 | CG9359-PA | 1..444 | 1..434 | 1263 | 54.4 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 1..432 | 1..426 | 1255 | 54.3 | Plus |
| betaTub60D-PA | 454 | CG3401-PA | 1..433 | 1..426 | 1253 | 53.9 | Plus |
