Clone BS14793 Report

Search the DGRC for BS14793

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRpL27-RA
Protein status:BS14793.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14793.3prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14793.3prime
ATGGTCTAGAAAGCTTTTAGAAACGCAGCTTCTGGAAGAACCACTTGTTC
TTGCCCTCCTTGTAGACGGACTCGAACTTGACGCGGGTCTGGAAGCGGTG
CGTCTTGCGCTTTACGGGATCCTTCAGGTCCTTGGGCGACAGCTTCTCAA
AGCTGATGTCGTGCGCCGTGTAGCGGGTGGGCATCAGATGATTGTAGTTC
AGGCTCTTCAGGAAGGGCTTGACCTTGGACTTCTTCTTCAGCTTGTTCTT
GCCCATCTTCTTGGTCACCTTGCGCGGGTAGCGATCGATACCGGCGACGA
GGGCGTGTCCGAAGGGCTTCTCCGGGGTTCCATCGTCGTGGGTCTTGACG
ATGATGGCCTTGCGACCGGCGTAACGTCCGCTAAGGACGATTACGATCTT
GCCCTGCTTCATGATTTTCCTCATGTCGACTGATAACT

BS14793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4759-PA 408 RpL27-RA 1..408 424..17 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..515 424..17 2040 100 Minus
RpL27-RC 544 CG4759-RC 49..456 424..17 2040 100 Minus
RpL27-RB 603 CG4759-RB 108..515 424..17 2040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684095..25684502 17..424 2040 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:38:07 has no hits.

BS14793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:31 Download gff for BS14793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4759-PA 1..408 17..424 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:19 Download gff for BS14793.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 12..424 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:43 Download gff for BS14793.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 12..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:43 Download gff for BS14793.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25684092..25684502 12..424 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:19 Download gff for BS14793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509814..21510224 12..424 99   Plus

BS14793.5prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14793.5prime
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCTAAAAGCTTTCTAGACC

BS14793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4759-PA 408 RpL27-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..515 17..424 2040 100 Plus
RpL27-RC 544 CG4759-RC 49..456 17..424 2040 100 Plus
RpL27-RB 603 CG4759-RB 108..515 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684095..25684502 424..17 2040 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:57:13 has no hits.

BS14793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:32 Download gff for BS14793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4759-PA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:15 Download gff for BS14793.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:42 Download gff for BS14793.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:42 Download gff for BS14793.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25684092..25684502 17..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:15 Download gff for BS14793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509814..21510224 17..429 99   Minus

BS14793.complete Sequence

440 bp assembled on 2006-11-01

GenBank Submission: FJ637786

> BS14793.complete
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCTAAAAGCTTTCTAGACCAT

BS14793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 408 CG4759-PD 1..408 17..424 2040 100 Plus
RpL27-RC 408 CG4759-PC 1..408 17..424 2040 100 Plus
RpL27-RB 408 CG4759-PB 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..515 17..424 2040 100 Plus
RpL27-RC 544 CG4759-RC 49..456 17..424 2040 100 Plus
RpL27-RB 603 CG4759-RB 108..515 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684095..25684502 424..17 2040 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:55:32 has no hits.

BS14793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:22 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:17 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 82..492 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:49 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..513 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:22 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 82..492 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:57 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..513 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:57 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25684097..25684502 17..422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:49 Download gff for BS14793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509819..21510224 17..422 100   Minus

BS14793.pep Sequence

Translation from 16 to 423

> BS14793.pep
MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYP
RKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDL
KDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF*

BS14793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-PD 135 CG4759-PD 1..135 1..135 710 100 Plus
RpL27-PC 135 CG4759-PC 1..135 1..135 710 100 Plus
RpL27-PB 135 CG4759-PB 1..135 1..135 710 100 Plus
RpL27-PA 135 CG4759-PA 1..135 1..135 710 100 Plus