Clone Sequence Records
BS14793.3prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14793.3prime
ATGGTCTAGAAAGCTTTTAGAAACGCAGCTTCTGGAAGAACCACTTGTTC
TTGCCCTCCTTGTAGACGGACTCGAACTTGACGCGGGTCTGGAAGCGGTG
CGTCTTGCGCTTTACGGGATCCTTCAGGTCCTTGGGCGACAGCTTCTCAA
AGCTGATGTCGTGCGCCGTGTAGCGGGTGGGCATCAGATGATTGTAGTTC
AGGCTCTTCAGGAAGGGCTTGACCTTGGACTTCTTCTTCAGCTTGTTCTT
GCCCATCTTCTTGGTCACCTTGCGCGGGTAGCGATCGATACCGGCGACGA
GGGCGTGTCCGAAGGGCTTCTCCGGGGTTCCATCGTCGTGGGTCTTGACG
ATGATGGCCTTGCGACCGGCGTAACGTCCGCTAAGGACGATTACGATCTT
GCCCTGCTTCATGATTTTCCTCATGTCGACTGATAACT
BS14793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4759-PA | 408 | RpL27-RA | 1..408 | 424..17 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..515 | 424..17 | 2040 | 100 | Minus |
RpL27-RC | 544 | CG4759-RC | 49..456 | 424..17 | 2040 | 100 | Minus |
RpL27-RB | 603 | CG4759-RB | 108..515 | 424..17 | 2040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684095..25684502 | 17..424 | 2040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:38:07 has no hits.
BS14793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:31 Download gff for
BS14793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4759-PA | 1..408 | 17..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:19 Download gff for
BS14793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 12..424 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:43 Download gff for
BS14793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 12..424 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:43 Download gff for
BS14793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684092..25684502 | 12..424 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:19 Download gff for
BS14793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509814..21510224 | 12..424 | 99 | | Plus |
BS14793.5prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14793.5prime
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCTAAAAGCTTTCTAGACC
BS14793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4759-PA | 408 | RpL27-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..515 | 17..424 | 2040 | 100 | Plus |
RpL27-RC | 544 | CG4759-RC | 49..456 | 17..424 | 2040 | 100 | Plus |
RpL27-RB | 603 | CG4759-RB | 108..515 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684095..25684502 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:57:13 has no hits.
BS14793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:32 Download gff for
BS14793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4759-PA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:15 Download gff for
BS14793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:42 Download gff for
BS14793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:42 Download gff for
BS14793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684092..25684502 | 17..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:15 Download gff for
BS14793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509814..21510224 | 17..429 | 99 | | Minus |
BS14793.complete Sequence
440 bp assembled on 2006-11-01
GenBank Submission: FJ637786
> BS14793.complete
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCTAAAAGCTTTCTAGACCAT
BS14793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 408 | CG4759-PD | 1..408 | 17..424 | 2040 | 100 | Plus |
RpL27-RC | 408 | CG4759-PC | 1..408 | 17..424 | 2040 | 100 | Plus |
RpL27-RB | 408 | CG4759-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..515 | 17..424 | 2040 | 100 | Plus |
RpL27-RC | 544 | CG4759-RC | 49..456 | 17..424 | 2040 | 100 | Plus |
RpL27-RB | 603 | CG4759-RB | 108..515 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684095..25684502 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:55:32 has no hits.
BS14793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:22 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:17 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 82..492 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:49 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..513 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:22 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 82..492 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:57 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..513 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:57 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684097..25684502 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:49 Download gff for
BS14793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509819..21510224 | 17..422 | 100 | | Minus |
BS14793.pep Sequence
Translation from 16 to 423
> BS14793.pep
MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYP
RKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDL
KDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF*
BS14793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-PD | 135 | CG4759-PD | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PC | 135 | CG4759-PC | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PB | 135 | CG4759-PB | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PA | 135 | CG4759-PA | 1..135 | 1..135 | 710 | 100 | Plus |