Clone BS14796 Report

Search the DGRC for BS14796

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:147
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptPpm1-RA
Protein status:BS14796.pep: full length peptide match
Sequenced Size:1091

Clone Sequence Records

BS14796.5prime Sequence

779 bp (774 high quality bases) assembled on 2006-10-13

> BS14796.5prime
GAAGTTATCAGTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAAC

BS14796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12169-PA 1059 CG12169-RA 1..763 17..779 3815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1422 CG12169-RA 175..937 17..779 3815 100 Plus
CG17746-RB 1694 CG17746-RB 222..923 17..724 505 72.4 Plus
CG17746-RA 1577 CG17746-RA 247..948 17..724 505 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581563..582325 17..779 3815 100 Plus
3L 28110227 3L 3238643..3238893 267..17 400 77.3 Minus
3L 28110227 3L 3237790..3237911 584..463 265 81.1 Minus
Blast to na_te.dros performed on 2015-02-11 22:33:00 has no hits.

BS14796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:33 Download gff for BS14796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12169-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:41:28 Download gff for BS14796.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 166..937 9..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:14 Download gff for BS14796.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 166..937 9..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:14 Download gff for BS14796.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 581558..582325 12..779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:41:28 Download gff for BS14796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581558..582325 12..779 99   Plus

BS14796.complete Sequence

1091 bp assembled on 2010-02-09

GenBank Submission: KX804007

> BS14796.complete
GAAGTTATCAGTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGAACTGATGA
ACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCGGCGACAAC
ATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTACGAGGATCT
GGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAACCGTAGGCG
ACATCCAGGATCAGTCGGTGAAGGTCGTAACTCCCTGTTCTCAGGGATCT
TCGGGGTCGTCGACTTCTCGATTGGGCCTGGGCTTCGGACTTCGCGAAAG
CGAAACTCCCGAGGCTAATCTTTAAAAGCTTTCTAGACCAT

BS14796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1059 CG12169-PA 1..1059 17..1075 5295 100 Plus
CG17746-RB 1116 CG17746-PB 1..858 17..880 465 71.1 Plus
CG17746-RA 1116 CG17746-PA 1..858 17..880 465 71.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1422 CG12169-RA 175..1233 17..1075 5295 100 Plus
CG17746-RB 1694 CG17746-RB 222..1079 17..880 465 71.1 Plus
CG17746-RA 1577 CG17746-RA 247..1104 17..880 465 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581563..582621 17..1075 5295 100 Plus
3L 28110227 3L 3238643..3238893 267..17 400 77.3 Minus
3L 28110227 3L 3237790..3237911 584..463 265 81.1 Minus
Blast to na_te.dros performed on 2014-11-28 04:28:59 has no hits.

BS14796.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:36 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1231 17..1073 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:07 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1231 17..1073 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:26 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1231 17..1073 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:54 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1231 17..1073 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:54 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581563..582619 17..1073 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:07 Download gff for BS14796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581563..582619 17..1073 100   Plus

BS14796.pep Sequence

Translation from 16 to 1074

> BS14796.pep
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NL*

BS14796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-PA 352 CG12169-PA 1..352 1..352 1852 100 Plus
CG17746-PB 371 CG17746-PB 1..297 1..299 1110 68.9 Plus
CG17746-PA 371 CG17746-PA 1..297 1..299 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..283 1..286 490 37.2 Plus
alph-PC 368 CG1906-PC 1..318 1..320 465 35.2 Plus