Clone Sequence Records
BS14796.5prime Sequence
779 bp (774 high quality bases) assembled on 2006-10-13
> BS14796.5prime
GAAGTTATCAGTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAAC
BS14796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12169-PA | 1059 | CG12169-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1422 | CG12169-RA | 175..937 | 17..779 | 3815 | 100 | Plus |
CG17746-RB | 1694 | CG17746-RB | 222..923 | 17..724 | 505 | 72.4 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..948 | 17..724 | 505 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 581563..582325 | 17..779 | 3815 | 100 | Plus |
3L | 28110227 | 3L | 3238643..3238893 | 267..17 | 400 | 77.3 | Minus |
3L | 28110227 | 3L | 3237790..3237911 | 584..463 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:33:00 has no hits.
BS14796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:33 Download gff for
BS14796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12169-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:41:28 Download gff for
BS14796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 166..937 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:14 Download gff for
BS14796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 166..937 | 9..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:14 Download gff for
BS14796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 581558..582325 | 12..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:41:28 Download gff for
BS14796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 581558..582325 | 12..779 | 99 | | Plus |
BS14796.complete Sequence
1091 bp assembled on 2010-02-09
GenBank Submission: KX804007
> BS14796.complete
GAAGTTATCAGTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGAACTGATGA
ACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCGGCGACAAC
ATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTACGAGGATCT
GGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAACCGTAGGCG
ACATCCAGGATCAGTCGGTGAAGGTCGTAACTCCCTGTTCTCAGGGATCT
TCGGGGTCGTCGACTTCTCGATTGGGCCTGGGCTTCGGACTTCGCGAAAG
CGAAACTCCCGAGGCTAATCTTTAAAAGCTTTCTAGACCAT
BS14796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1059 | CG12169-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
CG17746-RB | 1116 | CG17746-PB | 1..858 | 17..880 | 465 | 71.1 | Plus |
CG17746-RA | 1116 | CG17746-PA | 1..858 | 17..880 | 465 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1422 | CG12169-RA | 175..1233 | 17..1075 | 5295 | 100 | Plus |
CG17746-RB | 1694 | CG17746-RB | 222..1079 | 17..880 | 465 | 71.1 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1104 | 17..880 | 465 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 581563..582621 | 17..1075 | 5295 | 100 | Plus |
3L | 28110227 | 3L | 3238643..3238893 | 267..17 | 400 | 77.3 | Minus |
3L | 28110227 | 3L | 3237790..3237911 | 584..463 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:59 has no hits.
BS14796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:36 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1231 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:07 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1231 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:26 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1231 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:54 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1231 | 17..1073 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:54 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 581563..582619 | 17..1073 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:07 Download gff for
BS14796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 581563..582619 | 17..1073 | 100 | | Plus |
BS14796.pep Sequence
Translation from 16 to 1074
> BS14796.pep
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NL*
BS14796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-PA | 352 | CG12169-PA | 1..352 | 1..352 | 1852 | 100 | Plus |
CG17746-PB | 371 | CG17746-PB | 1..297 | 1..299 | 1110 | 68.9 | Plus |
CG17746-PA | 371 | CG17746-PA | 1..297 | 1..299 | 1110 | 68.9 | Plus |
CG6036-PA | 371 | CG6036-PA | 5..283 | 1..286 | 490 | 37.2 | Plus |
alph-PC | 368 | CG1906-PC | 1..318 | 1..320 | 465 | 35.2 | Plus |