Clone BS14801 Report

Search the DGRC for BS14801

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptMED11-RA
Protein status:BS14801.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14801.3prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS14801.3prime
ATGGTCTAGAAAGCTTTTAGTTGGTTGACATTGAGGAGTCTCCGCCCATG
GGATGATCTCCGCTGCCGGCATTTCCTCCTCCGGTTTGTTGTTGCTGCTG
TTGTGCCGCCTGTTGCATCTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTT
GCTGCTGCTGTTGCTGGGCGGCGGCATGTTCCTGCTGACGCTTCAACTGC
TGACGAGCTGCATGTGAGTGTTTGGCCTTAGTTTCCTCAAGTTCACGCAC
TCTGGACCTAGCGTGCTGAATGCGATGCCAAGCCATTTGGAGCACTTTGG
CGGATGCATAGCCGGAACCCTCGTGTGGCTGACCCGTGGACACCTGGGTC
AAGTAGTTGATCTGCTCGGACAGCTTCGATTCCACGCTGGACAGACTCTT
GAGAAACTGCTGCGACTGGGTCTCCGCATTTTTCTGGGAAGACTTTTCCT
TGCCCAACTCCTGCAAGGCTTGTCCTGCACTTTGCATGCACAGGATTATC
TCCTTTTCGATCTCATCTAGAGCGTGTATTTTGTCCAGAGGATTCATGTC
GACTGATAACT

BS14801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6884-PA 531 MED11-RA 1..531 547..17 2655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..578 547..17 2655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746488 477..17 2305 100 Minus
3L 28110227 3L 18745903..18745976 547..474 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:21:08 has no hits.

BS14801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:34 Download gff for BS14801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6884-PA 1..531 17..547 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:55 Download gff for BS14801.3prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 11..554 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:13 Download gff for BS14801.3prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 11..554 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:13 Download gff for BS14801.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18745899..18745975 475..554 96 -> Minus
3L 18746031..18746492 11..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:55 Download gff for BS14801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18738999..18739075 475..554 96 -> Minus
arm_3L 18739131..18739592 11..474 99   Minus

BS14801.5prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS14801.5prime
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACTAAAAG
CTTTCTAGACC

BS14801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6884-PA 531 MED11-RA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..578 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746488 87..547 2305 100 Plus
3L 28110227 3L 18745903..18745976 17..90 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:22:45 has no hits.

BS14801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:34 Download gff for BS14801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6884-PA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:37 Download gff for BS14801.5prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 10..553 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:14 Download gff for BS14801.5prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 10..553 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:14 Download gff for BS14801.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18745899..18745975 10..89 96 -> Plus
3L 18746031..18746492 90..553 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:37 Download gff for BS14801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18738999..18739075 10..89 96 -> Plus
arm_3L 18739131..18739592 90..553 99   Plus

BS14801.complete Sequence

563 bp assembled on 2006-11-01

GenBank Submission: FJ637787

> BS14801.complete
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACTAAAAG
CTTTCTAGACCAT

BS14801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 531 CG6884-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..578 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746488 87..547 2305 100 Plus
3L 28110227 3L 18745903..18745976 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:56:23 has no hits.

BS14801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:59 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:51 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 1..536 17..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:29 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 48..576 17..545 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:59 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 1..536 17..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:24 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 48..576 17..545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:24 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18745903..18745975 17..89 100 -> Plus
3L 18746031..18746486 90..545 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:29 Download gff for BS14801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18739003..18739075 17..89 100 -> Plus
arm_3L 18739131..18739586 90..545 100   Plus

BS14801.pep Sequence

Translation from 16 to 546

> BS14801.pep
MNPLDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLK
SLSSVESKLSEQINYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRV
RELEETKAKHSHAARQQLKRQQEHAAAQQQQQQQQQQQQQQQQMQQAAQQ
QQQQTGGGNAGSGDHPMGGDSSMSTN*

BS14801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-PA 176 CG6884-PA 1..176 1..176 889 100 Plus
btd-PA 644 CG12653-PA 18..89 83..154 153 50.7 Plus
psq-PK 639 CG2368-PK 56..186 55..169 151 35 Plus
psq-PJ 639 CG2368-PJ 56..186 55..169 151 35 Plus
psq-PF 645 CG2368-PF 62..192 55..169 151 35 Plus