Clone Sequence Records
BS14801.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS14801.3prime
ATGGTCTAGAAAGCTTTTAGTTGGTTGACATTGAGGAGTCTCCGCCCATG
GGATGATCTCCGCTGCCGGCATTTCCTCCTCCGGTTTGTTGTTGCTGCTG
TTGTGCCGCCTGTTGCATCTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTT
GCTGCTGCTGTTGCTGGGCGGCGGCATGTTCCTGCTGACGCTTCAACTGC
TGACGAGCTGCATGTGAGTGTTTGGCCTTAGTTTCCTCAAGTTCACGCAC
TCTGGACCTAGCGTGCTGAATGCGATGCCAAGCCATTTGGAGCACTTTGG
CGGATGCATAGCCGGAACCCTCGTGTGGCTGACCCGTGGACACCTGGGTC
AAGTAGTTGATCTGCTCGGACAGCTTCGATTCCACGCTGGACAGACTCTT
GAGAAACTGCTGCGACTGGGTCTCCGCATTTTTCTGGGAAGACTTTTCCT
TGCCCAACTCCTGCAAGGCTTGTCCTGCACTTTGCATGCACAGGATTATC
TCCTTTTCGATCTCATCTAGAGCGTGTATTTTGTCCAGAGGATTCATGTC
GACTGATAACT
BS14801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6884-PA | 531 | MED11-RA | 1..531 | 547..17 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..578 | 547..17 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746488 | 477..17 | 2305 | 100 | Minus |
3L | 28110227 | 3L | 18745903..18745976 | 547..474 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:21:08 has no hits.
BS14801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:34 Download gff for
BS14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6884-PA | 1..531 | 17..547 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:55 Download gff for
BS14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 11..554 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:13 Download gff for
BS14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 11..554 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:13 Download gff for
BS14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745899..18745975 | 475..554 | 96 | -> | Minus |
3L | 18746031..18746492 | 11..474 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:55 Download gff for
BS14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18738999..18739075 | 475..554 | 96 | -> | Minus |
arm_3L | 18739131..18739592 | 11..474 | 99 | | Minus |
BS14801.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS14801.5prime
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACTAAAAG
CTTTCTAGACC
BS14801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6884-PA | 531 | MED11-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..578 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746488 | 87..547 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 18745903..18745976 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:22:45 has no hits.
BS14801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:34 Download gff for
BS14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6884-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:37 Download gff for
BS14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 10..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:14 Download gff for
BS14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 10..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:14 Download gff for
BS14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745899..18745975 | 10..89 | 96 | -> | Plus |
3L | 18746031..18746492 | 90..553 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:37 Download gff for
BS14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18738999..18739075 | 10..89 | 96 | -> | Plus |
arm_3L | 18739131..18739592 | 90..553 | 99 | | Plus |
BS14801.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ637787
> BS14801.complete
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACTAAAAG
CTTTCTAGACCAT
BS14801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 531 | CG6884-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..578 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746488 | 87..547 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 18745903..18745976 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:56:23 has no hits.
BS14801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:59 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:51 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 1..536 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:29 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 48..576 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:59 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 1..536 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:24 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 48..576 | 17..545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:24 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745903..18745975 | 17..89 | 100 | -> | Plus |
3L | 18746031..18746486 | 90..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:29 Download gff for
BS14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18739003..18739075 | 17..89 | 100 | -> | Plus |
arm_3L | 18739131..18739586 | 90..545 | 100 | | Plus |
BS14801.pep Sequence
Translation from 16 to 546
> BS14801.pep
MNPLDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLK
SLSSVESKLSEQINYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRV
RELEETKAKHSHAARQQLKRQQEHAAAQQQQQQQQQQQQQQQQMQQAAQQ
QQQQTGGGNAGSGDHPMGGDSSMSTN*
BS14801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-PA | 176 | CG6884-PA | 1..176 | 1..176 | 889 | 100 | Plus |
btd-PA | 644 | CG12653-PA | 18..89 | 83..154 | 153 | 50.7 | Plus |
psq-PK | 639 | CG2368-PK | 56..186 | 55..169 | 151 | 35 | Plus |
psq-PJ | 639 | CG2368-PJ | 56..186 | 55..169 | 151 | 35 | Plus |
psq-PF | 645 | CG2368-PF | 62..192 | 55..169 | 151 | 35 | Plus |