Clone Sequence Records
BS14802.3prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BS14802.3prime
ATGGTCTAGAAAGCTTCTAGGCAATTTTTCGGCAATGATCATTTACGGTC
AGAGTAGTGCCCTGTGGACAAATTCGCGTTGTTTCCAGGACAATCCTTGG
CCCAATAACCACACTAGTGGCACTGCTAGCATTGGTGGCTTCCGTATGAT
CCCAAGGCGCTGGCTTATCTGAACTAGATTCCTGGCCGAAGGTTATCATC
TTGGACTCGCTGGAAGGATGTGCATGATTTTTCGAAATGCTGGGCACATC
GTTCATTTTAATCTCTTGTGTTGATGAGTTTCCCTGTGGTTCGGTCAAGT
TTTTCGAATCATTGGTAGTATTTGCCGGTGACTCATGCTTGTTGTCGTTA
GCCGTAGTTCTCGGTGTGCCCTTTTTGATTTCTTTGAGGATTGGTAGATT
TACATTTGTGGCTCTAGTCACCTCCGCCATTTCTCGCTCGATTTCCTTAA
GTCTGGATTCCAGTCGGATGGCTGTGGCATTTGGCTTGGACTCCGAGGGA
AACACAAACTGATCGCTGGGCACTCGAGCTGCACGATTTGTATCCAATGA
CAGACACAGCCAGACAAACAAAAACAGCAGCTTCGGCCAGGGAAGCCGCC
GCGTAATTGCCATGTCGACTGATAACT
BS14802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-PA | 597 | CG11400-RA | 1..597 | 613..17 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-RB | 1217 | CG11400-RB | 80..677 | 613..16 | 2990 | 100 | Minus |
CG11400-RA | 724 | CG11400-RA | 80..677 | 613..16 | 2990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17134208..17134805 | 613..16 | 2990 | 100 | Minus |
2R | 25286936 | 2R | 17135811..17135935 | 613..489 | 505 | 93.6 | Minus |
2R | 25286936 | 2R | 17135937..17136072 | 151..16 | 395 | 86 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:13:35 has no hits.
BS14802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:35 Download gff for
BS14802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:56 Download gff for
BS14802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..679 | 11..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:33 Download gff for
BS14802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..679 | 11..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:33 Download gff for
BS14802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17134208..17134807 | 11..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:56 Download gff for
BS14802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13021713..13022312 | 11..613 | 99 | | Minus |
BS14802.5prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BS14802.5prime
GAAGTTATCAGTCGACATGGCAATTACGCGGCGGCTTCCCTGGCCGAAGC
TGCTGTTTTTGTTTGTCTGGCTGTGTCTGTCATTGGATACAAATCGTGCA
GCTCGAGTGCCCAGCGATCAGTTTGTGTTTCCCTCGGAGTCCAAGCCAAA
TGCCACAGCCATCCGACTGGAATCCAGACTTAAGGAAATCGAGCGAGAAA
TGGCGGAGGTGACTAGAGCCACAAATGTAAATCTACCAATCCTCAAAGAA
ATCAAAAAGGGCACACCGAGAACTACGGCTAACGACAACAAGCATGAGTC
ACCGGCAAATACTACCAATGATTCGAAAAACTTGACCGAACCACAGGGAA
ACTCATCAACACAAGAGATTAAAATGAACGATGTGCCCAGCATTTCGAAA
AATCATGCACATCCTTCCAGCGAGTCCAAGATGATAACCTTCGGCCAGGA
ATCTAGTTCAGATAAGCCAGCGCCTTGGGATCATACGGAAGCCACCAATG
CTAGCAGTGCCACTAGTGTGGTTATTGGGCCAAGGATTGTCCTGGAAACA
ACGCGAATTTGTCCACAGGGCACTACTCTGACCGTAAATGATCATTGCCG
AAAAATTGCCTAGAAGCTTTCTAGACC
BS14802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-PA | 597 | CG11400-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-RB | 1217 | CG11400-RB | 80..677 | 17..614 | 2990 | 100 | Plus |
CG11400-RA | 724 | CG11400-RA | 80..677 | 17..614 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17134208..17134805 | 17..614 | 2990 | 100 | Plus |
2R | 25286936 | 2R | 17135811..17135935 | 17..141 | 505 | 93.6 | Plus |
2R | 25286936 | 2R | 17135937..17136072 | 479..614 | 395 | 86 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:38 has no hits.
BS14802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:35 Download gff for
BS14802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:08 Download gff for
BS14802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..679 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:32 Download gff for
BS14802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..679 | 17..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:32 Download gff for
BS14802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17134208..17134807 | 17..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:08 Download gff for
BS14802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13021713..13022312 | 17..619 | 99 | | Plus |
BS14802.complete Sequence
629 bp assembled on 2006-11-01
GenBank Submission: FJ637788
> BS14802.complete
GAAGTTATCAGTCGACATGGCAATTACGCGGCGGCTTCCCTGGCCGAAGC
TGCTGTTTTTGTTTGTCTGGCTGTGTCTGTCATTGGATACAAATCGTGCA
GCTCGAGTGCCCAGCGATCAGTTTGTGTTTCCCTCGGAGTCCAAGCCAAA
TGCCACAGCCATCCGACTGGAATCCAGACTTAAGGAAATCGAGCGAGAAA
TGGCGGAGGTGACTAGAGCCACAAATGTAAATCTACCAATCCTCAAAGAA
ATCAAAAAGGGCACACCGAGAACTACGGCTAACGACAACAAGCATGAGTC
ACCGGCAAATACTACCAATGATTCGAAAAACTTGACCGAACCACAGGGAA
ACTCATCAACACAAGAGATTAAAATGAACGATGTGCCCAGCATTTCGAAA
AATCATGCACATCCTTCCAGCGAGTCCAAGATGATAACCTTCGGCCAGGA
ATCTAGTTCAGATAAGCCAGCGCCTTGGGATCATACGGAAGCCACCAATG
CTAGCAGTGCCACTAGTGTGGTTATTGGGCCAAGGATTGTCCTGGAAACA
ACGCGAATTTGTCCACAGGGCACTACTCTGACCGTAAATGATCATTGCCG
AAAAATTGCCTAGAAGCTTTCTAGACCAT
BS14802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-RB | 597 | CG11400-PB | 1..597 | 17..613 | 2985 | 100 | Plus |
CG11400-RA | 597 | CG11400-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-RB | 1217 | CG11400-RB | 80..677 | 17..614 | 2990 | 100 | Plus |
CG11400-RA | 724 | CG11400-RA | 80..677 | 17..614 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17134208..17134805 | 17..614 | 2990 | 100 | Plus |
2R | 25286936 | 2R | 17135811..17135935 | 17..141 | 505 | 93.6 | Plus |
2R | 25286936 | 2R | 17135937..17136072 | 479..614 | 395 | 86 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:19:53 has no hits.
BS14802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:00 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:52 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 52..651 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:34 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..676 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:00 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 52..651 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:06 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11400-RA | 80..676 | 17..613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:06 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17134208..17134804 | 17..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:34 Download gff for
BS14802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13021713..13022309 | 17..613 | 100 | | Plus |
BS14802.pep Sequence
Translation from 16 to 612
> BS14802.pep
MAITRRLPWPKLLFLFVWLCLSLDTNRAARVPSDQFVFPSESKPNATAIR
LESRLKEIEREMAEVTRATNVNLPILKEIKKGTPRTTANDNKHESPANTT
NDSKNLTEPQGNSSTQEIKMNDVPSISKNHAHPSSESKMITFGQESSSDK
PAPWDHTEATNASSATSVVIGPRIVLETTRICPQGTTLTVNDHCRKIA*
BS14802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11400-PB | 198 | CG11400-PB | 1..198 | 1..198 | 1026 | 100 | Plus |
CG11400-PA | 198 | CG11400-PA | 1..198 | 1..198 | 1026 | 100 | Plus |