Clone Sequence Records
BS14803.complete Sequence
1541 bp assembled on 2009-12-07
GenBank Submission: KX804936
> BS14803.complete
GAAGTTATCAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACA
AAACTGTCTTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATT
GCGAAGCTGCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCG
TGCCAAACGCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGG
ATCCGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGC
GTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAA
CAGCGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGG
CGGCCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAAC
ACCCGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTT
GGAGTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGC
ACGTAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAG
ATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGC
ACCGGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTC
TGACGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATT
TTTCGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTG
GATCGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCG
GAATACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTA
CCCGTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGC
CCGGGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTA
CGCCAAATAATGATAACCTGATAACCTGGGGTGGATTTCGGGACAAGGCG
GCGAGGCTGCGGTACACGTATCCACTGACCAAGATGATGTGGTTGCCGTT
TCTGCATTGCACCACCATTCCCTGGCTATTCCGGTTCACGGCCATCTTTT
ATCACCTGCTCCCCGGCTATGCCATTGATCTGGCCTTGCGTTTATGGGGC
AAAAAGCCACGTATGATCAAGTTGTACGACAAGATCCACAAGAACATTGA
TATTCTGGCACCCTTTGTGATCACATCCTGGTCGTTCGATACCGTCAACA
CCCGCAAGTTGTGGGCCAAAATGTCTGTCGAGGATCAAAAGCTTTACGAT
TTTAATATGAGCAGCGTCGACTGGGATGATTACTTCCTACAGGCACTGGC
CGGAGTTCGCATCTATCTCGCCAAGGAGGAACCAGGACAGGAGGTAGTGG
AAAGGGGACGAAAGATCTATAAAAGGTTTGAATTTCTTCATCGGCTGCTG
CAGTTCACTCTTTGTGGCGGTGCTGCCCTAATATTGTGGTCAATTTTGAA
GCGACTACTGGGCTCATTTGTATAAAAGCTTTCTAGACCAT
BS14803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 1509 | CG10096-PD | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| CG10096-RB | 1509 | CG10096-PB | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| CG10096-RC | 1356 | CG10096-PC | 1..1356 | 170..1525 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 2358 | CG10096-RD | 110..1618 | 17..1525 | 7545 | 100 | Plus |
| CG10096-RB | 1841 | CG10096-RB | 110..1618 | 17..1525 | 7545 | 100 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3059..4493 | 91..1525 | 7175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 1427..717 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 12391848..12392359 | 716..205 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12392456..12392573 | 208..91 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12390906..12391007 | 1525..1424 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 12392827..12392902 | 92..17 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 326..557 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 326..492 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 396..677 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:46:00 has no hits.
BS14803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:31 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 1..1509 | 17..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:07 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1616 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:09 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1616 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:38 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1616 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:19 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1616 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:19 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390908..12391005 | 1426..1523 | 100 | <- | Minus |
| 3R | 12391084..12391792 | 717..1425 | 100 | <- | Minus |
| 3R | 12391848..12392358 | 206..716 | 100 | <- | Minus |
| 3R | 12392459..12392571 | 93..205 | 100 | <- | Minus |
| 3R | 12392827..12392902 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:09 Download gff for
BS14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216630..8216727 | 1426..1523 | 100 | <- | Minus |
| arm_3R | 8216806..8217514 | 717..1425 | 100 | <- | Minus |
| arm_3R | 8217570..8218080 | 206..716 | 100 | <- | Minus |
| arm_3R | 8218181..8218293 | 93..205 | 100 | <- | Minus |
| arm_3R | 8218549..8218624 | 17..92 | 100 | | Minus |
BS14803.3prime Sequence
893 bp (723 high quality bases) assembled on 2006-10-13
> BS14803.3prime
ATGGTCTAGAAAGCTTTTATACAAATGAGCCCAGTAGTCGCTTCAAAATT
GACCACAATATTAGGGCAGCACCGCCACAAAGAGTGAACTGCAGCAGCCG
ATGAAGAAATTCAAACCTTTTATAGATCTTTCGTCCCCTTTCCACTACCT
CCTGTCCTGGTTCCTCCTTGGCGAGATAGATGCGAACTCCGGCCAGTGCC
TGTAGGAAGTAATCATCCCAGTCGACGCTGCTCATATTAAAATCGTAAAG
CTTTTGATCCTCGACAGACATTTTGGCCCACAACTTGCGGGTGTTGACGG
TATCGAACGACCAGGATGTGATCACAAAGGGTGCCAGAATATCAATGTTC
TTGTGGATCTTGTCGTACAACTTGATCATACGTGGCTTTTTGCCCCATAA
ACGCAAGGCCAGATCAATGGCATAGCCGGGGAGCAGGTGATAAAAGATGG
CCGTGAACCGGAATAGCCAGGGAATGGTGGTGCAATGCAGAAACGGCAAC
CACATCATCTTGGTCAGTGGATACGTGTACCGCAGCCTCGCCGCCTTGTC
CCGAAATCCACCCCAGGTTATCAGGTTATCATTATTTGGCGTAAAATTGT
AGATAGGTGGCTCCGGCGATAGCTTGATACTTGTATCCCGGGCCGTGTTC
CAAGCGCAGGTCAGCACCATATTGACGCAGTAATCCACGGGTACAATTCC
AGCCTGGGCCTTAAGATTAAGCAGTGTGATATGCAGTATTCCGAAGGCTG
CTCCGTAGAGAACTGCAATGGGTCCGTACAGGTTGTCGATCCAGCCGGGC
ATGGGCTCCTTATAGCTGGCAATTATGACACCCGGACGAAAAATGCTAAG
CGGCATATCTTTCCGCCTCCTTCTGGGATCACCTGCTCCGTCA
BS14803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 482..1356 | 893..17 | 4280 | 99.6 | Minus |
| CG10096-PB | 1509 | CG10096-RB | 635..1509 | 893..17 | 4280 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3619..4493 | 893..17 | 4320 | 99.7 | Minus |
| CG10097-RD | 5233 | CG10097-RD | 3619..4493 | 893..17 | 4320 | 99.7 | Minus |
| CG10096-RD | 2358 | CG10096-RD | 744..1618 | 893..17 | 4320 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 115..825 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 12390906..12391007 | 17..118 | 510 | 100 | Plus |
| 3R | 32079331 | 3R | 12391848..12391913 | 826..893 | 225 | 95.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:07:51 has no hits.
BS14803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:35 Download gff for
BS14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 636..1509 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:10:41 Download gff for
BS14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3840..4713 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:09 Download gff for
BS14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 745..1618 | 17..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:09 Download gff for
BS14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390906..12391005 | 17..116 | 100 | <- | Plus |
| 3R | 12391084..12391792 | 117..825 | 100 | <- | Plus |
| 3R | 12391848..12391912 | 826..892 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:10:41 Download gff for
BS14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216628..8216727 | 17..116 | 100 | <- | Plus |
| arm_3R | 8216806..8217514 | 117..825 | 100 | <- | Plus |
| arm_3R | 8217570..8217634 | 826..892 | 95 | | Plus |
BS14803.5prime Sequence
718 bp (700 high quality bases) assembled on 2006-10-13
> BS14803.5prime
GAAGTTATCAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACA
AAACTGTCTTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATT
GCGAAGCTGCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCG
TGCCAAACGCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGG
ATCCGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGC
GTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAA
CAGCGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGG
CGGCCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAAC
ACCCGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTT
GGAGTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGC
ACGTAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAG
ATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGC
ACCGGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTC
TGACGGAGCAGGTGATCCAGAAAGAGGCGAAAGATTTGCCGCTTAGCATT
TTTCGTCCGGGTGTCATA
BS14803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PB | 1509 | CG10096-RB | 1..702 | 17..718 | 3485 | 99.8 | Plus |
| CG10096-PA | 1356 | CG10096-RA | 1..549 | 170..718 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 2358 | CG10096-RD | 110..811 | 17..718 | 3495 | 99.9 | Plus |
| CG10096-RB | 1841 | CG10096-RB | 110..811 | 17..718 | 3495 | 99.9 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3059..3686 | 91..718 | 3125 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 716..205 | 2545 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12392456..12392573 | 208..91 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12392827..12392902 | 92..17 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 326..557 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 326..492 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520547 | 396..671 | 225 | 72.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:27 has no hits.
BS14803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:36 Download gff for
BS14803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 1..701 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:34 Download gff for
BS14803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..810 | 9..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:34 Download gff for
BS14803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..810 | 9..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:34 Download gff for
BS14803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12391846..12392358 | 206..717 | 99 | <- | Minus |
| 3R | 12392459..12392571 | 93..205 | 100 | <- | Minus |
| 3R | 12392827..12392910 | 9..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:34 Download gff for
BS14803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8217568..8218080 | 206..717 | 99 | <- | Minus |
| arm_3R | 8218181..8218293 | 93..205 | 100 | <- | Minus |
| arm_3R | 8218549..8218632 | 9..92 | 96 | | Minus |
BS14803.pep Sequence
Translation from 16 to 1524
> BS14803.pep
MATDVQSFYKDKTVFLTGGSGFLGKVTIAKLLCTTEVKRIYVLLRAKRGQ
EMRERCAAWDKDPVFGNLMKTNPEALKRVVPCGGDCQEPDLGLSNSDRQV
LIDEVQIVIHTAATVRFVEPLHIALAVNTRATRLMIQLAKEMSHLESFVH
VSTAYSNCVVEHVSERFYPEHLTCPAEKILELLESISPELLDKMAPALMG
KYPNTYTYTKALTEQVIQKEAKDLPLSIFRPGVIIASYKEPMPGWIDNLY
GPIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVNMVLTCAWNTARDTSI
KLSPEPPIYNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHCTT
IPWLFRFTAIFYHLLPGYAIDLALRLWGKKPRMIKLYDKIHKNIDILAPF
VITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQALAGVRIY
LAKEEPGQEVVERGRKIYKRFEFLHRLLQFTLCGGAALILWSILKRLLGS
FV*
BS14803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PD | 502 | CG10096-PD | 1..502 | 1..502 | 2647 | 100 | Plus |
| CG10096-PB | 502 | CG10096-PB | 1..502 | 1..502 | 2647 | 100 | Plus |
| CG10096-PC | 451 | CG10096-PC | 1..451 | 52..502 | 2392 | 100 | Plus |
| CG10096-PA | 451 | CG10096-PA | 1..451 | 52..502 | 2392 | 100 | Plus |
| CG17562-PA | 499 | CG17562-PA | 1..499 | 1..498 | 1481 | 56.5 | Plus |
