Clone BS14807 Report

Search the DGRC for BS14807

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG17648-RA
Protein status:BS14807.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14807.3prime Sequence

417 bp (417 high quality bases) assembled on 2006-10-13

> BS14807.3prime
ATGGTCTAGAAAGCTTCTAGGCTTCGACGGCGGGTTCCATGGACAAGGAC
CTGCTGCTCACACTCCCGGCGGGGGTCATGATGTCCTCCAGCATTTGGTT
GAGCGACTCGGAGCCCAGAGCGTACTCCTGCTTATTGGCACTTCGGTTGT
GCATGGCGTCCAAGTAGACGCCACTCGCATTGCGCTCGCTGCTCAGAATG
TGCTGCATGACATTGCTGATCTGTTCGGAGCCCAGGATCTTCGGTTGCTC
GGTGGCCAGTCCATCGATGACCGCAGTTTCCAGCTGGCTTGAAATTTTGG
CCGGCGACTCCTCCTCGTTGGCAGTTTTTAGAAAACGAATCGCCTGTGCA
GAGGCCAAGGCTCCGGCCGTAAAAGAGGTCAGCAACTGAGCAATCGAAAT
CATGTCGACTGATAACT

BS14807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-PA 387 CG17648-RA 1..387 403..17 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-RA 541 CG17648-RA 76..471 403..7 1960 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1752383..1752772 403..14 1950 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:54:05 has no hits.

BS14807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:39 Download gff for BS14807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-PA 1..387 17..403 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:40 Download gff for BS14807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 72..476 1..408 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:59 Download gff for BS14807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 72..476 1..408 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:59 Download gff for BS14807.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1752379..1752783 1..408 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:40 Download gff for BS14807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1752379..1752783 1..408 98   Minus

BS14807.5prime Sequence

417 bp (417 high quality bases) assembled on 2006-10-13

> BS14807.5prime
GAAGTTATCAGTCGACATGATTTCGATTGCTCAGTTGCTGACCTCTTTTA
CGGCCGGAGCCTTGGCCTCTGCACAGGCGATTCGTTTTCTAAAAACTGCC
AACGAGGAGGAGTCGCCGGCCAAAATTTCAAGCCAGCTGGAAACTGCGGT
CATCGATGGACTGGCCACCGAGCAACCGAAGATCCTGGGCTCCGAACAGA
TCAGCAATGTCATGCAGCACATTCTGAGCAGCGAGCGCAATGCGAGTGGC
GTCTACTTGGACGCCATGCACAACCGAAGTGCCAATAAGCAGGAGTACGC
TCTGGGCTCCGAGTCGCTCAACCAAATGCTGGAGGACATCATGACCCCCG
CCGGGAGTGTGAGCAGCAGGTCCTTGTCCATGGAACCCGCCGTCGAAGCC
TAGAAGCTTTCTAGACC

BS14807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-PA 387 CG17648-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-RA 541 CG17648-RA 76..471 17..413 1960 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1752383..1752772 17..406 1950 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:13:59 has no hits.

BS14807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:39 Download gff for BS14807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-PA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:00 Download gff for BS14807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 72..475 12..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:35 Download gff for BS14807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 72..475 12..417 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:35 Download gff for BS14807.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1752379..1752782 12..417 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:00 Download gff for BS14807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1752379..1752782 12..417 98   Plus

BS14807.complete Sequence

419 bp assembled on 2006-11-01

GenBank Submission: FJ637789

> BS14807.complete
GAAGTTATCAGTCGACATGATTTCGATTGCTCAGTTGCTGACCTCTTTTA
CGGCCGGAGCCTTGGCCTCTGCACAGGCGATTCGTTTTCTAAAAACTGCC
AACGAGGAGGAGTCGCCGGCCAAAATTTCAAGCCAGCTGGAAACTGCGGT
CATCGATGGACTGGCCACCGAGCAACCGAAGATCCTGGGCTCCGAACAGA
TCAGCAATGTCATGCAGCACATTCTGAGCAGCGAGCGCAATGCGAGTGGC
GTCTACTTGGACGCCATGCACAACCGAAGTGCCAATAAGCAGGAGTACGC
TCTGGGCTCCGAGTCGCTCAACCAAATGCTGGAGGACATCATGACCCCCG
CCGGGAGTGTGAGCAGCAGGTCCTTGTCCATGGAACCCGCCGTCGAAGCC
TAGAAGCTTTCTAGACCAT

BS14807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-RA 387 CG17648-PA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-RA 541 CG17648-RA 76..465 17..406 1950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1752383..1752772 17..406 1950 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:02 has no hits.

BS14807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:01 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:54 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 31..435 12..419 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:32 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 76..462 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:02 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 31..435 12..419 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:21 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17648-RA 76..462 17..403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:21 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1752383..1752769 17..403 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:32 Download gff for BS14807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1752383..1752769 17..403 100   Plus

BS14807.pep Sequence

Translation from 16 to 402

> BS14807.pep
MISIAQLLTSFTAGALASAQAIRFLKTANEEESPAKISSQLETAVIDGLA
TEQPKILGSEQISNVMQHILSSERNASGVYLDAMHNRSANKQEYALGSES
LNQMLEDIMTPAGSVSSRSLSMEPAVEA*

BS14807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17648-PA 128 CG17648-PA 1..128 1..128 612 100 Plus