Clone Sequence Records
BS14811.3prime Sequence
868 bp (830 high quality bases) assembled on 2006-10-13
> BS14811.3prime
ATGGTCTAGAAAGCTTTCACTTTTCGTAGCCTTTCTTATCCTTTTCAGAA
TCCTTTAACAGATCCAGATCTCGAAGTTCTTGCAGCACAGCCTGGACGGA
CTTAAAGCGGTTGAGTGTGAAGAAGTGGAAGCCCCAAACCCCCACATCGG
CATCCAAAACATTACGAATCGTTCGGACGGTGAGGCTAACAAAGAACCTT
CTTATCAGATCTTGGTCAGACTTCATATCCTTCATATGGGCACTATGCAG
CTGATCGAGTTGCTCTCGCAAATCATCTGGCAGATGGACGCCGGTTATTT
GCTCGATCATTGAGTAGGAGCGAAAGGATTCATGCGACATCAGTCCCACA
ACAATGGGTACCGAGATTCCAGCTGCTCGACAGTCCTTCACAAATTGCAC
TATGACCTCGGGACGGTAGCATAACTGTGTGATAATGCAATCTGCTCCAG
CATCAATCTTTGCCTTTAGAAACTCCATGTTCTTAGCTGAATTTTGTGGT
ATGTCGCCTAAACTAGTGTATCCCTCTGGATATCCACCCACACAGACTGA
TATTGTTTCACCCCTCTGCCGTATCGATTGCTCCACCATGGGGTAGCTAA
TCGAGAAATCCTGATCCTCGTGAACTCGATCCCCTCGAACGGCCAAAAGA
CTGCTAAAGTTGAGGGCCAAAAACTGATCCAGTCGCTGCCTACTCATTCG
ATAGGCGGACACATGGGGCAGCACGGGAATGCGTGTGGCCAGGTGTTGGG
CCATCTGAAGGCTCTCCACCTGACCCACTGGCTCCACGTCCCAGTACCGC
TGACTCAGCCAAACGAAGCTCACGAAGGTGGGCAGGAGCGGCAGGAAGTG
ATTAAAGTCCAGGCAGGT
BS14811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 1050 | CG7560-RA | 199..1050 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 223..1074 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425920..11426362 | 459..17 | 2215 | 100 | Minus |
3L | 28110227 | 3L | 11425380..11425689 | 868..559 | 1550 | 100 | Minus |
3L | 28110227 | 3L | 11425753..11425854 | 559..458 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:54:17 has no hits.
BS14811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:41 Download gff for
BS14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 199..1050 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:43 Download gff for
BS14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 223..1074 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:19 Download gff for
BS14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 223..1074 | 17..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:19 Download gff for
BS14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425380..11425689 | 559..868 | 100 | -> | Minus |
3L | 11425754..11425854 | 458..558 | 100 | -> | Minus |
3L | 11425922..11426362 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:43 Download gff for
BS14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418480..11418789 | 559..868 | 100 | -> | Minus |
arm_3L | 11418854..11418954 | 458..558 | 100 | -> | Minus |
arm_3L | 11419022..11419462 | 17..457 | 100 | | Minus |
BS14811.5prime Sequence
761 bp (743 high quality bases) assembled on 2006-10-13
> BS14811.5prime
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTC
BS14811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 1050 | CG7560-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 25..769 | 17..761 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425182..11425689 | 17..524 | 2540 | 100 | Plus |
3L | 28110227 | 3L | 11425920..11426057 | 624..761 | 690 | 100 | Plus |
3L | 28110227 | 3L | 11425753..11425854 | 524..625 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:04:09 has no hits.
BS14811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:41 Download gff for
BS14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:35 Download gff for
BS14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 22..769 | 12..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:03 Download gff for
BS14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 22..769 | 12..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:03 Download gff for
BS14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425179..11425689 | 12..524 | 99 | -> | Plus |
3L | 11425754..11425854 | 525..625 | 100 | -> | Plus |
3L | 11425922..11426057 | 626..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:35 Download gff for
BS14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418279..11418789 | 12..524 | 99 | -> | Plus |
arm_3L | 11418854..11418954 | 525..625 | 100 | -> | Plus |
arm_3L | 11419022..11419157 | 626..761 | 100 | | Plus |
BS14811.complete Sequence
1082 bp assembled on 2006-11-01
GenBank Submission: FJ637790
> BS14811.complete
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGGCGTCCATC
TGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTGCCCATATG
AAGGATATGAAGTCTGACCAAGATCTGATAAGAAGGTTCTTTGTTAGCCT
CACCGTCCGAACGATTCGTAATGTTTTGGATGCCGATGTGGGGGTTTGGG
GCTTCCACTTCTTCACACTCAACCGCTTTAAGTCCGTCCAGGCTGTGCTG
CAAGAACTTCGAGATCTGGATCTGTTAAAGGATTCTGAAAAGGATAAGAA
AGGCTACGAAAAGTGAAAGCTTTCTAGACCAT
BS14811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1050 | CG7560-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 25..1074 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425182..11425689 | 17..524 | 2540 | 100 | Plus |
3L | 28110227 | 3L | 11425920..11426362 | 624..1066 | 2215 | 100 | Plus |
3L | 28110227 | 3L | 11425753..11425854 | 524..625 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:06 has no hits.
BS14811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:03 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:55 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 30..1082 | 12..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:50 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 25..1073 | 17..1065 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:03 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 30..1082 | 12..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:45 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 25..1073 | 17..1065 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:45 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425182..11425689 | 17..524 | 100 | -> | Plus |
3L | 11425754..11425854 | 525..625 | 100 | -> | Plus |
3L | 11425922..11426361 | 626..1065 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:50 Download gff for
BS14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418282..11418789 | 17..524 | 100 | -> | Plus |
arm_3L | 11418854..11418954 | 525..625 | 100 | -> | Plus |
arm_3L | 11419022..11419461 | 626..1065 | 100 | | Plus |
BS14811.pep Sequence
Translation from 16 to 1065
> BS14811.pep
MHAIQVPAGGSSPGAASYIPCVTFAPDQNESVVTKQRIGTLVAERTAQHR
LFYGIEVMASDPSGRPTCLDFNHFLPLLPTFVSFVWLSQRYWDVEPVGQV
ESLQMAQHLATRIPVLPHVSAYRMSRQRLDQFLALNFSSLLAVRGDRVHE
DQDFSISYPMVEQSIRQRGETISVCVGGYPEGYTSLGDIPQNSAKNMEFL
KAKIDAGADCIITQLCYRPEVIVQFVKDCRAAGISVPIVVGLMSHESFRS
YSMIEQITGVHLPDDLREQLDQLHSAHMKDMKSDQDLIRRFFVSLTVRTI
RNVLDADVGVWGFHFFTLNRFKSVQAVLQELRDLDLLKDSEKDKKGYEK*
BS14811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 349 | CG7560-PA | 1..349 | 1..349 | 1809 | 100 | Plus |