Clone Sequence Records
BS14816.complete Sequence
2756 bp assembled on 2009-12-07
GenBank Submission: KX806022
> BS14816.complete
GAAGTTATCAGTCGACATGGACGTGTCCCTCACTGAGCCGGAGACGCGCT
TCTACAGTGAGTTGTTCCAATGCTGCGACGTGGAGAAGACAGGCAAGGTG
CCCATGCTTAAGGCCACCGAGCTCTTTCGCTCGGCGGACATCGCCAATGA
GACCGTGATTGAGATCACCGGTCTGGCGGGGATACCCTCCACGGCGCTAC
ACATCTCGCGGACACAGTTCTACTCATGCCTGAAGCTAATCGCTGCTCAT
CAGGCGGCCATGCCCCTGCGCCAGGAGCTGATCTTGGCCACGTTTCCGCT
TCCATTACCGCACTTTAGCTGGAAGGAGGCGGTTACAGCTCCGGTGGCTG
TCGAAAATGGATTGACTGCCTTGCCACCGCCACCACCCACAGATCGCAGA
AATTCACTGCGTCGTAACTCGCAGCAAGAGCAGCTGCAAGACACCTCTGA
TGTGCCCAGCACCGACTCCGAGGTTGAGCAAAACGAATCAGTGGACGATG
CGACAGGCCATGGACGAGGTACGGATGGCTGTGGGGTCGTCAGCAGCAGC
AGCCGCGAAAATGTCGGGCGACGACGAGGAGGCGGTACTGGTGGTGGATC
GCCAGAAGCCTGGAGCACTAACAGTGACAGCCCCACGCCCACCAACAGCG
TGGCTGAGCGGCCTTGGGCGCAGGACACCCTCTGGCAGGGTTTGCTGGGC
GACGAGCATCGCCAGCTGCTAGGCACGGAGGAAGAGTCTTCCGATCGCCA
CAGCAGCGACGACGATGACAACGAGAGCGAATTGGTGACCATTTACCAGA
TAACCCCGGAACAGCGCGAGTACTATAATAAGCAGTTCAGGACGGTGCAA
AGGGATCCGCATGGTCTGCTTTCGGGCCAAGCAGCAAGAAACTTTTTTGA
AAAGAGCCGCATTCCTGTGGAGGAGCTACGTCACATTTGGCAGTTGTGTG
ACGTTACCCGCGATGGAGCGCTAAGTCTGTCTGAGTTTACGGCCGCCATG
CATTTGGTGGTTCTACGGCGCAACAACATTCCCTTGCCCACAAGTCTGCC
CCACTGTTTGCATCCCAACGTGCTACAAGCAGCTGCGTCCGGCAGTGGAC
AGGGGGTGACATCCTCGTCATCGGCGGCGCTGCCTCAGGAGCCACCTGAG
GCTGATCTCCTGCACCTAAATGATGACGATGAGGACGACCATACGGATAA
TACAATCATAGCAGGCAATCTCAGCGGCAGCAGTACGACCAGCAAACCGC
GTCCCAATGTGCCCAGCGACAAGAACATCATGAATCTGAGCAGCATATCC
ACGTCCTCGCAGGCTAGCAACAGTTCCAAACGTGAGGCAACACCACAGAA
TTCTTTGGGCAAGAACCGAAGCATCTCAAACTCGCCGAATGTGGAAAAAC
CTGTGTCGGGAACTGTTTCCTCTACGGCAAGCGCTGTAGACTCGACCAAC
GTCTCCAGTCAGTGGACAAAGTTTAGCGAATCTCCAACAACAAGTGCGGT
TTCGGTACAGTCAACCACTGGGGCAGCACCTGTTGTAGCAGCCGGAGCAG
CCGCTTCTGGCGCATCTAGTCCCGGGCTCAAGCCAGTCCTGTTTGATATG
AAGCGCTCGGCCCAAGACGTGGTATCCAATCCGCAGATTCTGCACCCAGT
GCCGCTAAGAGTGACGCCCATTGGCACCGCCATCGCTTCCTCAGCTGAGT
CATCTAACGAAAACGAGAGCGCGGTGGCTCAGCGCGAGGATAGTCCCAAG
GCCATCTCTTCGACTACTGTCAATAATCAGTCATCTGCTGTTGTACCCGG
AATATCGGGAGTCGCTGGCTCCTCCCACCGCGATAGCAGCGATCTGCGTG
CCATCCAACGGCCTCAAGCCAAAAAGCTGCCGGCCAAGAACAGTGCATTG
CCACCGCCACCGCAACGCGAGCCCAGTATCGGATCCACTGGGCCAAGTGA
GTCGCAGGAACCGCAGGCTGCCTACGTGGCATCGTCTTTGGCGTCGAAGA
AGGAGCCACCGCCTCTGCCACCGCCAAGGCCACATCGTCATGCACGGAGC
AGCAGTCTGGACTTAAACAAGTTTAAAATAGGCGCAACGGGCGGTGCCCA
ACAGGCGGAGATCACCGCGCAGGCCAGCTTCGATATGCAAACCTCAACGG
GGTTTGCCGATTTCACGCACTTTGCCGACGAAGGCGCCGCGAACGTCGTG
GACGAGCAGCAGCTACACTCCTTGCCGCCGGCAGCACCACCGCCACAGGC
AGCAGTGGTGCCGCCCACAAGAATCACTCTTCAGCAGGCACAGCAGCGCG
TTTCTGCCTTCGAGGTTTACCGAAAGCCGCAAACGCCACGTGGATCGCAA
TCGCCGCCCCAGCAGCCGCCACCGCCGGCTCCAGCTGTTGGTTTGACCAC
CCAAACTGGTCAGCTGCCCAGTGCTGAGAGCTTTGAGAAGCGAGTAACCG
CCATCAGTGACTCGCTACGTCACGTGTCCTTCAAACAGGGTCAGGCCAAT
ACCACGGAAGTACTGCAACGGCTGCGGGAGCAGAACAACTCACTGCTCCA
CCTTTGCAACGATTTAAGTGACGAACTTCTGAGCGTCCAGACGCGCAAGG
AGGAGATGCGTCTCAAGCTGGAGGGACTTAATGCCAGTGATAGTACAGGG
CGAACGAGCTCCTCGATTTGCGCACCGGTGACAGCAAACGTGACCGGTGG
ATCCTCTGGTTCGGCAGGAGCTGCTTATACCAACGTTTAAAAGCTTTCTA
GACCAT
BS14816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reps-RA | 2724 | CG6192-PA | 1..2724 | 17..2740 | 13620 | 100 | Plus |
Reps-RB | 2637 | CG6192-PB | 1..2094 | 17..2110 | 10470 | 100 | Plus |
Reps-RB | 2637 | CG6192-PB | 2095..2637 | 2198..2740 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reps-RA | 4820 | CG6192-RA | 432..3156 | 16..2740 | 13625 | 100 | Plus |
Reps-RB | 4733 | CG6192-RB | 432..2526 | 16..2110 | 10475 | 100 | Plus |
Reps-RB | 4733 | CG6192-RB | 2527..3069 | 2198..2740 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11104351..11105138 | 1674..887 | 3940 | 100 | Minus |
2L | 23513712 | 2L | 11102627..11103169 | 2740..2198 | 2715 | 100 | Minus |
2L | 23513712 | 2L | 11103844..11104281 | 2110..1673 | 2190 | 100 | Minus |
2L | 23513712 | 2L | 11105607..11106013 | 568..162 | 2035 | 100 | Minus |
2L | 23513712 | 2L | 11105205..11105525 | 888..568 | 1605 | 100 | Minus |
2L | 23513712 | 2L | 11106067..11106214 | 163..16 | 740 | 100 | Minus |
2L | 23513712 | 2L | 11103321..11103411 | 2199..2109 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:35 has no hits.
BS14816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:33 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6192-RA | 1..2724 | 17..2740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:40 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6192-RA | 426..3147 | 17..2738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:24 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 433..3154 | 17..2738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:19 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6192-RA | 426..3147 | 17..2738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:59 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 433..3154 | 17..2738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:59 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11102629..11103169 | 2198..2738 | 100 | <- | Minus |
2L | 11103323..11103409 | 2111..2197 | 100 | <- | Minus |
2L | 11103844..11104280 | 1674..2110 | 100 | <- | Minus |
2L | 11104352..11105136 | 889..1673 | 100 | <- | Minus |
2L | 11105205..11105524 | 569..888 | 100 | <- | Minus |
2L | 11105607..11106011 | 164..568 | 100 | <- | Minus |
2L | 11106067..11106213 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:24 Download gff for
BS14816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11102629..11103169 | 2198..2738 | 100 | <- | Minus |
arm_2L | 11103323..11103409 | 2111..2197 | 100 | <- | Minus |
arm_2L | 11103844..11104280 | 1674..2110 | 100 | <- | Minus |
arm_2L | 11104352..11105136 | 889..1673 | 100 | <- | Minus |
arm_2L | 11105205..11105524 | 569..888 | 100 | <- | Minus |
arm_2L | 11105607..11106011 | 164..568 | 100 | <- | Minus |
arm_2L | 11106067..11106213 | 17..163 | 100 | | Minus |
BS14816.3prime Sequence
848 bp (765 high quality bases) assembled on 2006-10-13
> BS14816.3prime
ATGGTCTAGAAAGCTTTTAAACGTTGGTATAAGCAGCTCCTGCCGAACCA
GAGGATCCACCGGTCACGTTTGCTGTCACCGGTGCGCAAATCGAGGAGCT
CGTTCGCCCTGTACTATCACTGGCATTAAGTCCCTCCAGCTTGAGACGCA
TCTCCTCCTTGCGCGTCTGGACGCTCAGAAGTTCGTCACTTAAATCGTTG
CAAAGGTGGAGCAGTGAGTTGTTCTGCTCCCGCAGCCGTTGCAGTACTTC
CGTGGTATTGGCCTGACCCTGTTTGAAGGACACGTGACGTAGCGAGTCAC
TGATGGCGGTTACTCGCTTCTCAAAGCTCTCAGCACTGGGCAGCTGACCA
GTTTGGGTGGTCAAACCAACAGCTGGAGCCGGCGGTGGCGGCTGCTGGGG
CGGCGATTGCGATCCACGTGGCGTTTGCGGCTTTCGGTAAACCTCGAAGG
CAGAAACGCGCTGCTGTGCCTGCTGAAGAGTGATTCTTGTGGGCGGCACC
ACTGCTGCCTGTGGCGGTGGTGCTGCCGGCGGCAAGGAGTGTAGCTGCTG
CTCGTCCACGACGTTCGCGGCGCCTTCGTCGGCAAAGTGCGTGAAATCGG
CAAACCCCGTTGAGGTTTGCATATCGAAGCTGGCCTGCGCGGTGATCTCC
GCCTGTTGGGCACCGCCCGTTGCGCCTATTTTAAACTTGTTTAAGTCCAG
ACTGCTGCTCCGTGCATGACGATGTGGCCTTGGCGGTGGCAGAGGCGGTG
GCTCCTTCTTCGACGCCAAAGACGATGCCACGTAGGCAGCCTGCGGTTTC
TGCGACTCACTTGGCCCAGTGGATCCGATACTGGGCTCGCGTTGCGGT
BS14816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6192-PA | 2724 | CG6192-RA | 1893..2724 | 848..17 | 4135 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reps-RA | 4820 | CG6192-RA | 2325..3156 | 848..17 | 4145 | 99.9 | Minus |
Reps-RB | 4733 | CG6192-RB | 2527..3069 | 559..17 | 2715 | 100 | Minus |
Reps-RB | 4733 | CG6192-RB | 2325..2526 | 848..647 | 995 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11102627..11103169 | 17..559 | 2715 | 100 | Plus |
2L | 23513712 | 2L | 11103844..11104045 | 647..848 | 995 | 99.5 | Plus |
2L | 23513712 | 2L | 11103321..11103411 | 558..648 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:32:56 has no hits.
BS14816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:44 Download gff for
BS14816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6192-PA | 1893..2724 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:17 Download gff for
BS14816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 2325..3158 | 13..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:16 Download gff for
BS14816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 2325..3158 | 13..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:16 Download gff for
BS14816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11102622..11103169 | 13..559 | 99 | <- | Plus |
2L | 11103323..11103409 | 560..646 | 100 | <- | Plus |
2L | 11103844..11104045 | 647..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:17 Download gff for
BS14816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11102622..11103169 | 13..559 | 99 | <- | Plus |
arm_2L | 11103323..11103409 | 560..646 | 100 | <- | Plus |
arm_2L | 11103844..11104045 | 647..848 | 99 | | Plus |
BS14816.5prime Sequence
836 bp (834 high quality bases) assembled on 2006-10-13
> BS14816.5prime
GAAGTTATCAGTCGACATGGACGTGTCCCTCACTGAGCCGGAGACGCGCT
TCTACAGTGAGTTGTTCCAATGCTGCGACGTGGAGAAGACAGGCAAGGTG
CCCATGCTTAAGGCCACCGAGCTCTTTCGCTCGGCGGACATCGCCAATGA
GACCGTGATTGAGATCACCGGTCTGGCGGGGATACCCTCCACGGCGCTAC
ACATCTCGCGGACACAGTTCTACTCATGCCTGAAGCTAATCGCTGCTCAT
CAGGCGGCCATGCCCCTGCGCCAGGAGCTGATCTTGGCCACGTTTCCGCT
TCCATTACCGCACTTTAGCTGGAAGGAGGCGGTTACAGCTCCGGTGGCTG
TCGAAAATGGATTGACTGCCTTGCCACCGCCACCACCCACAGATCGCAGA
AATTCACTGCGTCGTAACTCGCAGCAAGAGCAGCTGCAAGACACCTCTGA
TGTGCCCAGCACCGACTCCGAGGTTGAGCAAAACGAATCAGTGGACGATG
CGACAGGCCATGGACGAGGTACGGATGGCTGTGGGGTCGTCAGCAGCAGC
AGCCGCGAAAATGTCGGGCGACGACGAGGAGGCGGTACTGGTGGTGGATC
GCCAGAAGCCTGGAGCACTAACAGTGACAGCCCCACGCCCACCAACAGCG
TGGCTGAGCGGCCTTGGGCGCAGGACACCCTCTGGCAGGGTTTGCTGGGC
GACGAGCATCGCCAGCTGCTAGGCACGGAGGAAGAGTCTTCCGATCGCCA
CAGCAGCGACGACGATGACAACGAGAGCGAATTGGTGACCATTTACCAGA
TAACCCCGGAACAGCGCGAGTACTATAATAAGCAGT
BS14816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6192-PA | 2724 | CG6192-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reps-RB | 4733 | CG6192-RB | 432..1252 | 16..836 | 4105 | 100 | Plus |
Reps-RA | 4820 | CG6192-RA | 432..1252 | 16..836 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11105607..11106013 | 568..162 | 2035 | 100 | Minus |
2L | 23513712 | 2L | 11105257..11105525 | 836..568 | 1345 | 100 | Minus |
2L | 23513712 | 2L | 11106067..11106214 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:53:01 has no hits.
BS14816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:45 Download gff for
BS14816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6192-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:03 Download gff for
BS14816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 428..1252 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:49 Download gff for
BS14816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reps-RA | 428..1252 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:49 Download gff for
BS14816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11105257..11105524 | 569..836 | 100 | <- | Minus |
2L | 11105607..11106011 | 164..568 | 100 | <- | Minus |
2L | 11106067..11106218 | 9..163 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:03 Download gff for
BS14816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11105257..11105524 | 569..836 | 100 | <- | Minus |
arm_2L | 11105607..11106011 | 164..568 | 100 | <- | Minus |
arm_2L | 11106067..11106218 | 9..163 | 98 | | Minus |
BS14816.pep Sequence
Translation from 16 to 2739
> BS14816.pep
MDVSLTEPETRFYSELFQCCDVEKTGKVPMLKATELFRSADIANETVIEI
TGLAGIPSTALHISRTQFYSCLKLIAAHQAAMPLRQELILATFPLPLPHF
SWKEAVTAPVAVENGLTALPPPPPTDRRNSLRRNSQQEQLQDTSDVPSTD
SEVEQNESVDDATGHGRGTDGCGVVSSSSRENVGRRRGGGTGGGSPEAWS
TNSDSPTPTNSVAERPWAQDTLWQGLLGDEHRQLLGTEEESSDRHSSDDD
DNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNFFEKSRIP
VEELRHIWQLCDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHP
NVLQAAASGSGQGVTSSSSAALPQEPPEADLLHLNDDDEDDHTDNTIIAG
NLSGSSTTSKPRPNVPSDKNIMNLSSISTSSQASNSSKREATPQNSLGKN
RSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSESPTTSAVSVQST
TGAAPVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPVPLRVT
PIGTAIASSAESSNENESAVAQREDSPKAISSTTVNNQSSAVVPGISGVA
GSSHRDSSDLRAIQRPQAKKLPAKNSALPPPPQREPSIGSTGPSESQEPQ
AAYVASSLASKKEPPPLPPPRPHRHARSSSLDLNKFKIGATGGAQQAEIT
AQASFDMQTSTGFADFTHFADEGAANVVDEQQLHSLPPAAPPPQAAVVPP
TRITLQQAQQRVSAFEVYRKPQTPRGSQSPPQQPPPPAPAVGLTTQTGQL
PSAESFEKRVTAISDSLRHVSFKQGQANTTEVLQRLREQNNSLLHLCNDL
SDELLSVQTRKEEMRLKLEGLNASDSTGRTSSSICAPVTANVTGGSSGSA
GAAYTNV*
BS14816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reps-PA | 907 | CG6192-PA | 1..907 | 1..907 | 4634 | 100 | Plus |
Reps-PB | 878 | CG6192-PB | 1..878 | 1..907 | 4446 | 96.8 | Plus |
Dap160-PH | 1005 | CG1099-PH | 5..120 | 257..373 | 161 | 33.3 | Plus |
Dap160-PB | 1014 | CG1099-PB | 5..120 | 257..373 | 161 | 33.3 | Plus |
Dap160-PG | 1088 | CG1099-PG | 5..120 | 257..373 | 161 | 33.3 | Plus |